RNA–Protein interactions for RNA: ENST00000413725.5

SF1-206, Transcript of splicing factor 1, human

TSL 2

Gene SF1, Length 843 nt, Biotype protein coding, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SF1-206	ENST00000413725	ADO	Q96SZ5	270 aa		12.11	□□□□□ -0.47
SF1-206	ENST00000413725	SECISBP2	Q96T21	854 aa	Known RBP	12.11	□□□□□ -0.47
SF1-206	ENST00000413725	CGREF1	Q99674	301 aa		12.11	□□□□□ -0.47
SF1-206	ENST00000413725	G6PC3	Q9BUM1	346 aa		12.11	□□□□□ -0.47
SF1-206	ENST00000413725	SERHL2	Q9H4I8	314 aa		12.11	□□□□□ -0.47
SF1-206	ENST00000413725	THUMPD1	Q9NXG2	353 aa	Known RBP	12.11	□□□□□ -0.47
SF1-206	ENST00000413725	SLC25A37	Q9NYZ2	338 aa		12.11	□□□□□ -0.47
SF1-206	ENST00000413725	CNIH4	Q9P003	139 aa		12.11	□□□□□ -0.47
SF1-206	ENST00000413725	SLAMF8	Q9P0V8	285 aa		12.11	□□□□□ -0.47
SF1-206	ENST00000413725	MAP10	Q9P2G4	905 aa		12.11	□□□□□ -0.47
SF1-206	ENST00000413725	PCDHGB6	Q9Y5F9	930 aa		12.11	□□□□□ -0.47
SF1-206	ENST00000413725	ZNF407	Q9C0G0	2248 aa		12.11	□□□□□ -0.47
SF1-206	ENST00000413725	RP1L1	Q8IWN7	2480 aa	Predicted RBP	12.11	□□□□□ -0.47
SF1-206	ENST00000413725	TRBV5-3	A0A0A0MS03	114 aa		12.1	□□□□□ -0.47
SF1-206	ENST00000413725	TMEM247	A6NEH6	219 aa		12.1	□□□□□ -0.47
SF1-206	ENST00000413725	UGT2B11	O75310	529 aa		12.1	□□□□□ -0.47
SF1-206	ENST00000413725	KCNK2	O95069	426 aa		12.1	□□□□□ -0.47
SF1-206	ENST00000413725	UNC5C	O95185	931 aa		12.1	□□□□□ -0.47
SF1-206	ENST00000413725	OR12D1	P0DN82	309 aa		12.1	□□□□□ -0.47
SF1-206	ENST00000413725	ATP6V1C1	P21283	382 aa		12.1	□□□□□ -0.47
SF1-206	ENST00000413725	LCN1	P31025	176 aa		12.1	□□□□□ -0.47
SF1-206	ENST00000413725	DSTN	P60981	165 aa		12.1	□□□□□ -0.47
SF1-206	ENST00000413725	HPCA	P84074	193 aa		12.1	□□□□□ -0.47
SF1-206	ENST00000413725	ART3	Q13508	389 aa		12.1	□□□□□ -0.47
SF1-206	ENST00000413725	NADK2	Q4G0N4	442 aa		12.1	□□□□□ -0.47
SF1-206	ENST00000413725	TBCEL	Q5QJ74	424 aa		12.1	□□□□□ -0.47
SF1-206	ENST00000413725	COX20	Q5RI15	118 aa		12.1	□□□□□ -0.47
SF1-206	ENST00000413725	DCST2	Q5T1A1	773 aa		12.1	□□□□□ -0.47
SF1-206	ENST00000413725	DDX59	Q5T1V6	619 aa	Known RBP eCLIP	12.1	□□□□□ -0.47	7e-15	■□□□□ 8.7
SF1-206	ENST00000413725	SLC6A19	Q695T7	634 aa		12.1	□□□□□ -0.47
SF1-206	ENST00000413725	SLC25A25	Q6KCM7	469 aa		12.1	□□□□□ -0.47
SF1-206	ENST00000413725	FIGNL1	Q6PIW4	674 aa		12.1	□□□□□ -0.47
SF1-206	ENST00000413725	ZNF227	Q86WZ6	799 aa		12.1	□□□□□ -0.47
SF1-206	ENST00000413725	MSRB3	Q8IXL7	192 aa		12.1	□□□□□ -0.47
SF1-206	ENST00000413725	FBXW8	Q8N3Y1	598 aa		12.1	□□□□□ -0.47
SF1-206	ENST00000413725	FAM98A	Q8NCA5	519 aa	Known RBP	12.1	□□□□□ -0.47
SF1-206	ENST00000413725	PAQR8	Q8TEZ7	354 aa		12.1	□□□□□ -0.47
SF1-206	ENST00000413725	XAGE5	Q8WWM1	108 aa		12.1	□□□□□ -0.47
SF1-206	ENST00000413725	SLC39A7	Q92504	469 aa		12.1	□□□□□ -0.47
SF1-206	ENST00000413725	RAB8B	Q92930	207 aa		12.1	□□□□□ -0.47
SF1-206	ENST00000413725	ROPN1L	Q96C74	230 aa		12.1	□□□□□ -0.47
SF1-206	ENST00000413725	LRRC58	Q96CX6	371 aa		12.1	□□□□□ -0.47
SF1-206	ENST00000413725	SCMH1	Q96GD3	660 aa		12.1	□□□□□ -0.47
SF1-206	ENST00000413725	ANKRD27	Q96NW4	1050 aa		12.1	□□□□□ -0.47
SF1-206	ENST00000413725	SH3GL1	Q99961	368 aa		12.1	□□□□□ -0.47
SF1-206	ENST00000413725	CPPED1	Q9BRF8	314 aa	Predicted RBP	12.1	□□□□□ -0.47
SF1-206	ENST00000413725	EFCAB1	Q9HAE3	211 aa		12.1	□□□□□ -0.47
SF1-206	ENST00000413725	KLHL1	Q9NR64	748 aa		12.1	□□□□□ -0.47
SF1-206	ENST00000413725	SACM1L	Q9NTJ5	587 aa		12.1	□□□□□ -0.47
SF1-206	ENST00000413725	GMEB1	Q9Y692	573 aa		12.1	□□□□□ -0.47
SF1-206	ENST00000413725	PRRC2C	Q9Y520	2896 aa	Known RBP	12.09	□□□□□ -0.47
SF1-206	ENST00000413725	KLRC4-KLRK1	H3BQV0	150 aa		12.09	□□□□□ -0.47
SF1-206	ENST00000413725	HMGN4	O00479	90 aa		12.09	□□□□□ -0.47
SF1-206	ENST00000413725	AIM2	O14862	343 aa		12.09	□□□□□ -0.47
SF1-206	ENST00000413725	NME2P1	O60361	137 aa		12.09	□□□□□ -0.47
SF1-206	ENST00000413725	CCL3	P10147	92 aa		12.09	□□□□□ -0.47
SF1-206	ENST00000413725	NME2	P22392	152 aa		12.09	□□□□□ -0.47
SF1-206	ENST00000413725	NFATC3	Q12968	1075 aa		12.09	□□□□□ -0.47
SF1-206	ENST00000413725	CAPRIN1	Q14444	709 aa	Known RBP	12.09	□□□□□ -0.47
SF1-206	ENST00000413725	RGN	Q15493	299 aa		12.09	□□□□□ -0.47
SF1-206	ENST00000413725	INA	Q16352	499 aa		12.09	□□□□□ -0.47
SF1-206	ENST00000413725	CPEB4	Q17RY0	729 aa	Known RBP eCLIP	12.09	□□□□□ -0.47
SF1-206	ENST00000413725	ARHGAP11B	Q3KRB8	267 aa		12.09	□□□□□ -0.47
SF1-206	ENST00000413725	RUNDC3A	Q59EK9	446 aa		12.09	□□□□□ -0.47
SF1-206	ENST00000413725	CCNJ	Q5T5M9	372 aa		12.09	□□□□□ -0.47
SF1-206	ENST00000413725	MDGA2	Q7Z553	956 aa		12.09	□□□□□ -0.47
SF1-206	ENST00000413725	PTRH1	Q86Y79	214 aa	Known RBP	12.09	□□□□□ -0.47
SF1-206	ENST00000413725	FITM2	Q8N6M3	262 aa		12.09	□□□□□ -0.47
SF1-206	ENST00000413725	CHDH	Q8NE62	594 aa	Predicted RBP	12.09	□□□□□ -0.47
SF1-206	ENST00000413725	FAM110B	Q8TC76	370 aa		12.09	□□□□□ -0.47
SF1-206	ENST00000413725	SPPL2A	Q8TCT8	520 aa		12.09	□□□□□ -0.47
SF1-206	ENST00000413725	HGD	Q93099	445 aa		12.09	□□□□□ -0.47
SF1-206	ENST00000413725	METTL7A	Q9H8H3	244 aa		12.09	□□□□□ -0.47
SF1-206	ENST00000413725	SH2D2A	Q9NP31	389 aa		12.09	□□□□□ -0.47
SF1-206	ENST00000413725	P2RX2	Q9UBL9	471 aa		12.09	□□□□□ -0.47
SF1-206	ENST00000413725	TAGLN3	Q9UI15	199 aa		12.09	□□□□□ -0.47
SF1-206	ENST00000413725	LIPT1	Q9Y234	373 aa		12.09	□□□□□ -0.47
SF1-206	ENST00000413725	CHCHD2	Q9Y6H1	151 aa	Predicted RBP	12.09	□□□□□ -0.47
SF1-206	ENST00000413725	KCNE3	Q9Y6H6	103 aa		12.09	□□□□□ -0.47
SF1-206	ENST00000413725	BSN	Q9UPA5	3926 aa		12.09	□□□□□ -0.47
SF1-206	ENST00000413725	SHANK1	Q9Y566	2161 aa		12.08	□□□□□ -0.48
SF1-206	ENST00000413725	C15orf38-AP3S2	A0A0A6YYH1	394 aa		12.08	□□□□□ -0.48
SF1-206	ENST00000413725	PRAMEF25	A6NGN4	478 aa		12.08	□□□□□ -0.48
SF1-206	ENST00000413725	ICOSLG	O75144	302 aa		12.08	□□□□□ -0.48
SF1-206	ENST00000413725	STX11	O75558	287 aa		12.08	□□□□□ -0.48
SF1-206	ENST00000413725	C1QC	P02747	245 aa		12.08	□□□□□ -0.48
SF1-206	ENST00000413725	NR2F1	P10589	423 aa		12.08	□□□□□ -0.48
SF1-206	ENST00000413725	CYP4B1	P13584	511 aa		12.08	□□□□□ -0.48
SF1-206	ENST00000413725	ETFA	P13804	333 aa		12.08	□□□□□ -0.48
SF1-206	ENST00000413725	GPX2	P18283	190 aa		12.08	□□□□□ -0.48
SF1-206	ENST00000413725	CLK3	P49761	638 aa	Known RBP	12.08	□□□□□ -0.48
SF1-206	ENST00000413725	NUDT2	P50583	147 aa		12.08	□□□□□ -0.48
SF1-206	ENST00000413725	MVD	P53602	400 aa		12.08	□□□□□ -0.48
SF1-206	ENST00000413725	GNA13	Q14344	377 aa		12.08	□□□□□ -0.48
SF1-206	ENST00000413725	KRT72	Q14CN4	511 aa		12.08	□□□□□ -0.48
SF1-206	ENST00000413725	PLEKHN1	Q494U1	663 aa	Predicted RBP	12.08	□□□□□ -0.48
SF1-206	ENST00000413725	GPAT3	Q53EU6	434 aa		12.08	□□□□□ -0.48
SF1-206	ENST00000413725	GCNT6	Q5T4J0	391 aa		12.08	□□□□□ -0.48
SF1-206	ENST00000413725	HEPHL1	Q6MZM0	1159 aa		12.08	□□□□□ -0.48
SF1-206	ENST00000413725	RPUSD3	Q6P087	351 aa	Known RBP	12.08	□□□□□ -0.48

Retrieved 100 of 20,778 RNA–protein pairs in 58.6 ms