RNA–Protein interactions for RNA: ENST00000413716.6

CCDC88A-204, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best) BASIC

Gene CCDC88A, Length 9,586 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-204ENST00000413716 OR8J3Q8NGG0 315 aa12.7□□□□□ -0.38
CCDC88A-204ENST00000413716 C8orf89P0DMQ9 161 aa12.7□□□□□ -0.38
CCDC88A-204ENST00000413716 M6PRP20645 277 aa12.7□□□□□ -0.38
CCDC88A-204ENST00000413716 MTNR1AP48039 350 aa12.7□□□□□ -0.38
CCDC88A-204ENST00000413716 SOHLH1Q5JUK2 328 aa12.7□□□□□ -0.38
CCDC88A-204ENST00000413716 GOLGA7Q7Z5G4 137 aa12.7□□□□□ -0.38
CCDC88A-204ENST00000413716 Q8N9G6 341 aaPredicted RBP12.7□□□□□ -0.38
CCDC88A-204ENST00000413716 SLC23A2Q9UGH3 650 aa12.7□□□□□ -0.38
CCDC88A-204ENST00000413716 YTHDF2Q9Y5A9 579 aaKnown RBP12.7□□□□□ -0.38
CCDC88A-204ENST00000413716 TP53P04637 393 aaPredicted RBP12.7□□□□□ -0.38
CCDC88A-204ENST00000413716 DDCP20711 480 aa12.7□□□□□ -0.38
CCDC88A-204ENST00000413716 LAP3P28838 519 aa12.7□□□□□ -0.38
CCDC88A-204ENST00000413716 ARL2P36404 184 aa12.7□□□□□ -0.38
CCDC88A-204ENST00000413716 TAGLN2P37802 199 aaKnown RBP12.7□□□□□ -0.38
CCDC88A-204ENST00000413716 LAPTM4AQ15012 233 aa12.7□□□□□ -0.38
CCDC88A-204ENST00000413716 CXCL17Q6UXB2 119 aa12.7□□□□□ -0.38
CCDC88A-204ENST00000413716 TMIGD1Q6UXZ0 262 aa12.7□□□□□ -0.38
CCDC88A-204ENST00000413716 NPAS4Q8IUM7 802 aa12.7□□□□□ -0.38
CCDC88A-204ENST00000413716 REM2Q8IYK8 340 aaPredicted RBP12.7□□□□□ -0.38
CCDC88A-204ENST00000413716 LDHAL6BQ9BYZ2 381 aaPredicted RBP12.7□□□□□ -0.38
CCDC88A-204ENST00000413716 ARL2-SNX15V9GYD0 113 aa12.7□□□□□ -0.38
CCDC88A-204ENST00000413716 DNAJB1P25685 340 aa12.69□□□□□ -0.38
CCDC88A-204ENST00000413716 GABRA3P34903 492 aa12.69□□□□□ -0.38
CCDC88A-204ENST00000413716 PRRC1Q96M27 445 aa12.69□□□□□ -0.38
CCDC88A-204ENST00000413716 MGLLQ99685 303 aa12.69□□□□□ -0.38
CCDC88A-204ENST00000413716 SPTBP11277 2137 aa12.69□□□□□ -0.38
CCDC88A-204ENST00000413716 ABCA6Q8N139 1617 aa12.69□□□□□ -0.38
CCDC88A-204ENST00000413716 TRAV18A0A075B6X5 111 aa12.69□□□□□ -0.38
CCDC88A-204ENST00000413716 AOC2O75106 756 aa12.69□□□□□ -0.38
CCDC88A-204ENST00000413716 CD52P31358 61 aa12.69□□□□□ -0.38
CCDC88A-204ENST00000413716 SCNN1AP37088 669 aa12.69□□□□□ -0.38
CCDC88A-204ENST00000413716 EEF1AKMT2Q5JPI9 291 aaKnown RBP12.69□□□□□ -0.38
CCDC88A-204ENST00000413716 ACDQ96AP0 544 aa12.69□□□□□ -0.38
CCDC88A-204ENST00000413716 TLCD1Q96CP7 247 aa12.69□□□□□ -0.38
CCDC88A-204ENST00000413716 HDHD5Q9BXW7 423 aa12.69□□□□□ -0.38
CCDC88A-204ENST00000413716 B3GNT5Q9BYG0 378 aa12.69□□□□□ -0.38
CCDC88A-204ENST00000413716 HRASLSQ9HDD0 168 aa12.69□□□□□ -0.38
CCDC88A-204ENST00000413716 LTN1O94822 1766 aa12.69□□□□□ -0.38
CCDC88A-204ENST00000413716 MANBAO00462 879 aa12.69□□□□□ -0.38
CCDC88A-204ENST00000413716 STATHP02808 62 aa12.69□□□□□ -0.38
CCDC88A-204ENST00000413716 SLC35A2P78381 396 aa12.69□□□□□ -0.38
CCDC88A-204ENST00000413716 GALNT1Q10472 559 aaPredicted RBP12.69□□□□□ -0.38
CCDC88A-204ENST00000413716 GRB7Q14451 532 aa12.69□□□□□ -0.38
CCDC88A-204ENST00000413716 HNF4GQ14541 408 aa12.69□□□□□ -0.38
CCDC88A-204ENST00000413716 IL34Q6ZMJ4 242 aa12.69□□□□□ -0.38
CCDC88A-204ENST00000413716 ZNF704Q6ZNC4 412 aaPredicted RBP12.69□□□□□ -0.38
CCDC88A-204ENST00000413716 PSMG2Q969U7 264 aa12.69□□□□□ -0.38
CCDC88A-204ENST00000413716 BMFQ96LC9 184 aa12.69□□□□□ -0.38
CCDC88A-204ENST00000413716 C1orf123Q9NWV4 160 aa12.69□□□□□ -0.38
CCDC88A-204ENST00000413716 TUBAL3A6NHL2 446 aa12.69□□□□□ -0.38
CCDC88A-204ENST00000413716 FAM227AF5H4B4 570 aa12.69□□□□□ -0.38
CCDC88A-204ENST00000413716 HAS3O00219 553 aa12.69□□□□□ -0.38
CCDC88A-204ENST00000413716 OR12D1P0DN82 309 aa12.69□□□□□ -0.38
CCDC88A-204ENST00000413716 USF1P22415 310 aaPredicted RBP12.69□□□□□ -0.38
CCDC88A-204ENST00000413716 PSMB3P49720 205 aa12.69□□□□□ -0.38
CCDC88A-204ENST00000413716 SLC14A1Q13336 389 aa12.69□□□□□ -0.38
CCDC88A-204ENST00000413716 ETFRF1Q6IPR1 90 aa12.69□□□□□ -0.38
CCDC88A-204ENST00000413716 SYNPRQ8TBG9 265 aa12.69□□□□□ -0.38
CCDC88A-204ENST00000413716 CWH43Q9H720 699 aa12.69□□□□□ -0.38
CCDC88A-204ENST00000413716 GNB4Q9HAV0 340 aa12.69□□□□□ -0.38
CCDC88A-204ENST00000413716 LIPT1Q9Y234 373 aa12.69□□□□□ -0.38
CCDC88A-204ENST00000413716 MAP1BP46821 2468 aaKnown RBP12.69□□□□□ -0.38
CCDC88A-204ENST00000413716 NWD1Q149M9 1564 aa12.69□□□□□ -0.38
CCDC88A-204ENST00000413716 DISP1Q96F81 1524 aa12.69□□□□□ -0.38
CCDC88A-204ENST00000413716 LACC1Q8IV20 430 aa12.69□□□□□ -0.38
CCDC88A-204ENST00000413716 TEX26Q8N6G2 289 aa12.69□□□□□ -0.38
CCDC88A-204ENST00000413716 PPTC7Q8NI37 304 aa12.69□□□□□ -0.38
CCDC88A-204ENST00000413716 SENP5Q96HI0 755 aaPredicted RBP12.69□□□□□ -0.38
CCDC88A-204ENST00000413716 HAPLN3Q96S86 360 aa12.69□□□□□ -0.38
CCDC88A-204ENST00000413716 TMEM59Q9BXS4 323 aa12.69□□□□□ -0.38
CCDC88A-204ENST00000413716 AGXT2Q9BYV1 514 aa12.69□□□□□ -0.38
CCDC88A-204ENST00000413716 MAGIXQ9H6Y5 334 aa12.69□□□□□ -0.38
CCDC88A-204ENST00000413716 PCDHB10Q9UN67 800 aa12.69□□□□□ -0.38
CCDC88A-204ENST00000413716 OR2M5A3KFT3 312 aa12.69□□□□□ -0.38
CCDC88A-204ENST00000413716 KLHL33A6NCF5 533 aa12.69□□□□□ -0.38
CCDC88A-204ENST00000413716 MAFO75444 373 aaPredicted RBP12.69□□□□□ -0.38
CCDC88A-204ENST00000413716 INHAP05111 366 aa12.69□□□□□ -0.38
CCDC88A-204ENST00000413716 THBS1P07996 1170 aa12.69□□□□□ -0.38
CCDC88A-204ENST00000413716 DEFA4P12838 97 aa12.69□□□□□ -0.38
CCDC88A-204ENST00000413716 FOLR1P15328 257 aa12.69□□□□□ -0.38
CCDC88A-204ENST00000413716 GKP32189 559 aa12.69□□□□□ -0.38
CCDC88A-204ENST00000413716 BMXP51813 675 aa12.69□□□□□ -0.38
CCDC88A-204ENST00000413716 RPS18P62269 152 aaKnown RBP12.69□□□□□ -0.38
CCDC88A-204ENST00000413716 RPS13P62277 151 aaKnown RBP12.69□□□□□ -0.38
CCDC88A-204ENST00000413716 ANGPTL6Q8NI99 470 aa12.69□□□□□ -0.38
CCDC88A-204ENST00000413716 IL1F10Q8WWZ1 152 aa12.69□□□□□ -0.38
CCDC88A-204ENST00000413716 SRRQ9GZT4 340 aa12.69□□□□□ -0.38
CCDC88A-204ENST00000413716 GAR1Q9NY12 217 aaKnown RBP12.69□□□□□ -0.38
CCDC88A-204ENST00000413716 DICER1Q9UPY3 1922 aaKnown RBP12.69□□□□□ -0.38
CCDC88A-204ENST00000413716 FOXO6A8MYZ6 492 aa12.69□□□□□ -0.38
CCDC88A-204ENST00000413716 TGOLN2O43493 480 aa12.69□□□□□ -0.38
CCDC88A-204ENST00000413716 CBR1P16152 277 aa12.69□□□□□ -0.38
CCDC88A-204ENST00000413716 PPP3CBP16298 524 aa12.69□□□□□ -0.38
CCDC88A-204ENST00000413716 GABRR1P24046 479 aa12.69□□□□□ -0.38
CCDC88A-204ENST00000413716 PPT1P50897 306 aa12.69□□□□□ -0.38
CCDC88A-204ENST00000413716 ABHD12BQ7Z5M8 362 aaPredicted RBP12.69□□□□□ -0.38
CCDC88A-204ENST00000413716 ZDHHC11Q9H8X9 412 aa12.69□□□□□ -0.38
CCDC88A-204ENST00000413716 MYEF2Q9P2K5 600 aaKnown RBP12.69□□□□□ -0.38
CCDC88A-204ENST00000413716 CLCF1Q9UBD9 225 aa12.69□□□□□ -0.38
CCDC88A-204ENST00000413716 HSPE1-MOB4S4R3N1 261 aa12.69□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 53.7 ms