RNA–Protein interactions for RNA: ENST00000409809.5

COL6A3-206, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 8,916 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-206ENST00000409809 CPNE7Q9UBL6 633 aa12.27□□□□□ -0.45
COL6A3-206ENST00000409809 MMP7P09237 267 aaPredicted RBP12.27□□□□□ -0.45
COL6A3-206ENST00000409809 PIM1P11309 404 aaPredicted RBP12.27□□□□□ -0.45
COL6A3-206ENST00000409809 ZNF43P17038 809 aa12.27□□□□□ -0.45
COL6A3-206ENST00000409809 KCNQ1P51787 676 aa12.27□□□□□ -0.45
COL6A3-206ENST00000409809 SMAD3P84022 425 aaKnown RBP12.27□□□□□ -0.45
COL6A3-206ENST00000409809 ADAMTS18Q8TE60 1221 aa12.27□□□□□ -0.45
COL6A3-206ENST00000409809 ZBTB8AQ96BR9 441 aa12.27□□□□□ -0.45
COL6A3-206ENST00000409809 MOCOSQ96EN8 888 aa12.27□□□□□ -0.45
COL6A3-206ENST00000409809 METTL17Q9H7H0 456 aaPredicted RBP12.27□□□□□ -0.45
COL6A3-206ENST00000409809 SPTBP11277 2137 aa12.27□□□□□ -0.45
COL6A3-206ENST00000409809 LRIT2A6NDA9 550 aa12.27□□□□□ -0.45
COL6A3-206ENST00000409809 HAS3O00219 553 aa12.27□□□□□ -0.45
COL6A3-206ENST00000409809 CHRNA4P43681 627 aa12.27□□□□□ -0.45
COL6A3-206ENST00000409809 PAN2Q504Q3 1202 aaKnown RBP12.27□□□□□ -0.45
COL6A3-206ENST00000409809 MTURNQ8N3F0 131 aa12.27□□□□□ -0.45
COL6A3-206ENST00000409809 GPR26Q8NDV2 337 aa12.27□□□□□ -0.45
COL6A3-206ENST00000409809 DAZAP1Q96EP5 407 aaKnown RBP12.27□□□□□ -0.45
COL6A3-206ENST00000409809 DPM1O60762 260 aa12.26□□□□□ -0.45
COL6A3-206ENST00000409809 DRD2P14416 443 aa12.26□□□□□ -0.45
COL6A3-206ENST00000409809 RAB6AP20340 208 aa12.26□□□□□ -0.45
COL6A3-206ENST00000409809 FAM214AQ32MH5 1076 aa12.26□□□□□ -0.45
COL6A3-206ENST00000409809 GLB1L2Q8IW92 636 aa12.26□□□□□ -0.45
COL6A3-206ENST00000409809 OR13C2Q8NGS9 318 aa12.26□□□□□ -0.45
COL6A3-206ENST00000409809 SYT7O43581 403 aa12.26□□□□□ -0.45
COL6A3-206ENST00000409809 JTBO76095 146 aa12.26□□□□□ -0.45
COL6A3-206ENST00000409809 HENMT1Q5T8I9 393 aaKnown RBP12.26□□□□□ -0.45
COL6A3-206ENST00000409809 TMIGD1Q6UXZ0 262 aa12.26□□□□□ -0.45
COL6A3-206ENST00000409809 HPSE2Q8WWQ2 592 aa12.26□□□□□ -0.45
COL6A3-206ENST00000409809 TECTBQ96PL2 329 aa12.26□□□□□ -0.45
COL6A3-206ENST00000409809 HRH4Q9H3N8 390 aa12.26□□□□□ -0.45
COL6A3-206ENST00000409809 VAPAQ9P0L0 249 aa12.26□□□□□ -0.45
COL6A3-206ENST00000409809 OR2C1O95371 312 aa12.26□□□□□ -0.45
COL6A3-206ENST00000409809 RAF1P04049 648 aa12.26□□□□□ -0.45
COL6A3-206ENST00000409809 SERPINA7P05543 415 aa12.26□□□□□ -0.45
COL6A3-206ENST00000409809 GJB1P08034 283 aa12.26□□□□□ -0.45
COL6A3-206ENST00000409809 H2BFMP0C1H6 154 aa12.26□□□□□ -0.45
COL6A3-206ENST00000409809 AKR1A1P14550 325 aa12.26□□□□□ -0.45
COL6A3-206ENST00000409809 FKBP1BP68106 108 aa12.26□□□□□ -0.45
COL6A3-206ENST00000409809 TMEM35AQ53FP2 167 aa12.26□□□□□ -0.45
COL6A3-206ENST00000409809 WDR88Q6ZMY6 472 aa12.26□□□□□ -0.45
COL6A3-206ENST00000409809 VASH1Q7L8A9 365 aaPredicted RBP12.26□□□□□ -0.45
COL6A3-206ENST00000409809 DCBLD1Q8N8Z6 715 aa12.26□□□□□ -0.45
COL6A3-206ENST00000409809 PRAP1Q96NZ9 151 aa12.26□□□□□ -0.45
COL6A3-206ENST00000409809 NIFKQ9BYG3 293 aaKnown RBP12.26□□□□□ -0.45
COL6A3-206ENST00000409809 MCOLN1Q9GZU1 580 aa12.26□□□□□ -0.45
COL6A3-206ENST00000409809 FABP1P07148 127 aa12.26□□□□□ -0.45
COL6A3-206ENST00000409809 ZNF16P17020 682 aaPredicted RBP12.26□□□□□ -0.45
COL6A3-206ENST00000409809 SUMO1P63165 101 aaKnown RBP12.26□□□□□ -0.45
COL6A3-206ENST00000409809 PGLYRP2Q96PD5 576 aa12.26□□□□□ -0.45
COL6A3-206ENST00000409809 FEVQ99581 238 aa12.26□□□□□ -0.45
COL6A3-206ENST00000409809 HOXD1Q9GZZ0 328 aa12.26□□□□□ -0.45
COL6A3-206ENST00000409809 NMUR1Q9HB89 426 aa12.26□□□□□ -0.45
COL6A3-206ENST00000409809 YTHDF2Q9Y5A9 579 aaKnown RBP12.26□□□□□ -0.45
COL6A3-206ENST00000409809 TMEM82A0PJX8 343 aa12.26□□□□□ -0.45
COL6A3-206ENST00000409809 FOXO6A8MYZ6 492 aa12.26□□□□□ -0.45
COL6A3-206ENST00000409809 CACNG3O60359 315 aa12.26□□□□□ -0.45
COL6A3-206ENST00000409809 ALDOAP04075 364 aaKnown RBP12.26□□□□□ -0.45
COL6A3-206ENST00000409809 EDNRBP24530 442 aa12.26□□□□□ -0.45
COL6A3-206ENST00000409809 PRKCZQ05513 592 aa12.26□□□□□ -0.45
COL6A3-206ENST00000409809 PDZK1IP1Q13113 114 aa12.26□□□□□ -0.45
COL6A3-206ENST00000409809 VARS2Q5ST30 1063 aaKnown RBP12.26□□□□□ -0.45
COL6A3-206ENST00000409809 LYSMD3Q7Z3D4 306 aa12.26□□□□□ -0.45
COL6A3-206ENST00000409809 RIMS3Q9UJD0 308 aa12.26□□□□□ -0.45
COL6A3-206ENST00000409809 TIMM8BQ9Y5J9 83 aaPredicted RBP12.26□□□□□ -0.45
COL6A3-206ENST00000409809 ENPP4Q9Y6X5 453 aa12.26□□□□□ -0.45
COL6A3-206ENST00000409809 DRD5P21918 477 aa12.26□□□□□ -0.45
COL6A3-206ENST00000409809 PRPH2P23942 346 aa12.26□□□□□ -0.45
COL6A3-206ENST00000409809 ADH7P40394 386 aa12.26□□□□□ -0.45
COL6A3-206ENST00000409809 CLRN1P58418 232 aa12.26□□□□□ -0.45
COL6A3-206ENST00000409809 GALNT2Q10471 571 aa12.26□□□□□ -0.45
COL6A3-206ENST00000409809 TAF9Q16594 264 aa12.26□□□□□ -0.45
COL6A3-206ENST00000409809 ZC3H14Q6PJT7 736 aaKnown RBP12.26□□□□□ -0.45
COL6A3-206ENST00000409809 REM2Q8IYK8 340 aaPredicted RBP12.26□□□□□ -0.45
COL6A3-206ENST00000409809 DNAJC5Q9H3Z4 198 aa12.26□□□□□ -0.45
COL6A3-206ENST00000409809 CIDEAO60543 219 aa12.26□□□□□ -0.45
COL6A3-206ENST00000409809 TIA1P31483 386 aaKnown RBP eCLIP12.26□□□□□ -0.45
COL6A3-206ENST00000409809 LRFN5Q96NI6 719 aa12.26□□□□□ -0.45
COL6A3-206ENST00000409809 SRMSQ9H3Y6 488 aa12.26□□□□□ -0.45
COL6A3-206ENST00000409809 SEMA4GQ9NTN9 838 aa12.26□□□□□ -0.45
COL6A3-206ENST00000409809 RYDENQ9NUL5 291 aaKnown RBP12.26□□□□□ -0.45
COL6A3-206ENST00000409809 ADAM23O75077 832 aa12.25□□□□□ -0.45
COL6A3-206ENST00000409809 CLN5O75503 358 aa12.25□□□□□ -0.45
COL6A3-206ENST00000409809 ERVK-16P61578 105 aa12.25□□□□□ -0.45
COL6A3-206ENST00000409809 RAP1AP62834 184 aa12.25□□□□□ -0.45
COL6A3-206ENST00000409809 KIAA0907Q7Z7F0 614 aaPredicted RBP12.25□□□□□ -0.45
COL6A3-206ENST00000409809 KDM8Q8N371 416 aa12.25□□□□□ -0.45
COL6A3-206ENST00000409809 STEAP2Q8NFT2 490 aa12.25□□□□□ -0.45
COL6A3-206ENST00000409809 PMEPA1Q969W9 287 aa12.25□□□□□ -0.45
COL6A3-206ENST00000409809 C14orf79Q96F83 325 aa12.25□□□□□ -0.45
COL6A3-206ENST00000409809 DMAC2Q9NW81 257 aa12.25□□□□□ -0.45
COL6A3-206ENST00000409809 COQ3Q9NZJ6 369 aa12.25□□□□□ -0.45
COL6A3-206ENST00000409809 SLC17A6Q9P2U8 582 aa12.25□□□□□ -0.45
COL6A3-206ENST00000409809 CBY3A6NI87 242 aa12.25□□□□□ -0.45
COL6A3-206ENST00000409809 SNCGO76070 127 aa12.25□□□□□ -0.45
COL6A3-206ENST00000409809 SCG5P05408 212 aa12.25□□□□□ -0.45
COL6A3-206ENST00000409809 Q3ZCU0 254 aa12.25□□□□□ -0.45
COL6A3-206ENST00000409809 TECRLQ5HYJ1 363 aa12.25□□□□□ -0.45
COL6A3-206ENST00000409809 TCTE1Q5JU00 501 aa12.25□□□□□ -0.45
COL6A3-206ENST00000409809 OR5D16Q8NGK9 328 aa12.25□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms