RNA–Protein interactions for RNA: ENST00000400301.5

USP48-204, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 1 (best) BASIC

Gene USP48, Length 4,309 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-204ENST00000400301 ENTPD8Q5MY95 495 aa17.43■□□□□ 0.38
USP48-204ENST00000400301 SLX4IPQ5VYV7 408 aa17.43■□□□□ 0.38
USP48-204ENST00000400301 RPL13AP3Q6NVV1 102 aa17.43■□□□□ 0.38
USP48-204ENST00000400301 GDPD1Q8N9F7 314 aa17.43■□□□□ 0.38
USP48-204ENST00000400301 OR4F15Q8NGB8 312 aa17.43■□□□□ 0.38
USP48-204ENST00000400301 PITX2Q99697 317 aa17.43■□□□□ 0.38
USP48-204ENST00000400301 HDAC8Q9BY41 377 aa17.43■□□□□ 0.38
USP48-204ENST00000400301 SNX11Q9Y5W9 270 aa17.43■□□□□ 0.38
USP48-204ENST00000400301 LINC01553A4QN01 128 aa17.43■□□□□ 0.38
USP48-204ENST00000400301 PDCD5O14737 125 aa17.43■□□□□ 0.38
USP48-204ENST00000400301 BMP1P13497 986 aa17.43■□□□□ 0.38
USP48-204ENST00000400301 CTBSQ01459 385 aa17.43■□□□□ 0.38
USP48-204ENST00000400301 DPTQ07507 201 aa17.43■□□□□ 0.38
USP48-204ENST00000400301 TAF13Q15543 124 aa17.43■□□□□ 0.38
USP48-204ENST00000400301 DEFB110Q30KQ9 67 aa17.43■□□□□ 0.38
USP48-204ENST00000400301 TBC1D25Q3MII6 688 aa17.43■□□□□ 0.38
USP48-204ENST00000400301 TMEM53Q6P2H8 277 aa17.43■□□□□ 0.38
USP48-204ENST00000400301 PGBD2Q6P3X8 592 aa17.43■□□□□ 0.38
USP48-204ENST00000400301 SLC25A36Q96CQ1 311 aa17.43■□□□□ 0.38
USP48-204ENST00000400301 SERINC2Q96SA4 455 aa17.43■□□□□ 0.38
USP48-204ENST00000400301 TRIM2Q9C040 744 aa17.43■□□□□ 0.38
USP48-204ENST00000400301 DDX31Q9H8H2 851 aaKnown RBP17.43■□□□□ 0.38
USP48-204ENST00000400301 MBNL1Q9NR56 388 aaKnown RBP17.43■□□□□ 0.38
USP48-204ENST00000400301 SH2B3Q9UQQ2 575 aa17.43■□□□□ 0.38
USP48-204ENST00000400301 SESN1Q9Y6P5 492 aa17.43■□□□□ 0.38
USP48-204ENST00000400301 ARID1BQ8NFD5 2236 aaPredicted RBP17.43■□□□□ 0.38
USP48-204ENST00000400301 SIP14410 1827 aa17.42■□□□□ 0.38
USP48-204ENST00000400301 TRBV5-3A0A0A0MS03 114 aa17.42■□□□□ 0.38
USP48-204ENST00000400301 LOC105378220A0A1B0GUY1 285 aaPredicted RBP17.42■□□□□ 0.38
USP48-204ENST00000400301 A0A1W2PQ09 198 aa17.42■□□□□ 0.38
USP48-204ENST00000400301 AGAP14A8MT82 685 aa17.42■□□□□ 0.38
USP48-204ENST00000400301 FLRT2O43155 660 aa17.42■□□□□ 0.38
USP48-204ENST00000400301 LDB3O75112 727 aa17.42■□□□□ 0.38
USP48-204ENST00000400301 FAUP35544 74 aaKnown RBP17.42■□□□□ 0.38
USP48-204ENST00000400301 MLLT3P42568 568 aaPredicted RBP17.42■□□□□ 0.38
USP48-204ENST00000400301 ZFP36L2P47974 494 aaKnown RBP17.42■□□□□ 0.38
USP48-204ENST00000400301 OXA1LQ15070 435 aa17.42■□□□□ 0.38
USP48-204ENST00000400301 ZNF550Q7Z398 422 aa17.42■□□□□ 0.38
USP48-204ENST00000400301 GPALPP1Q8IXQ4 340 aa17.42■□□□□ 0.38
USP48-204ENST00000400301 TRIM43Q96BQ3 446 aaPredicted RBP17.42■□□□□ 0.38
USP48-204ENST00000400301 YIPF6Q96EC8 236 aa17.42■□□□□ 0.38
USP48-204ENST00000400301 ADAD1Q96M93 576 aaKnown RBP17.42■□□□□ 0.38
USP48-204ENST00000400301 DOK1Q99704 481 aa17.42■□□□□ 0.38
USP48-204ENST00000400301 GAL3ST1Q99999 423 aa17.42■□□□□ 0.38
USP48-204ENST00000400301 COMMD4Q9H0A8 199 aa17.42■□□□□ 0.38
USP48-204ENST00000400301 NLKQ9UBE8 527 aa17.42■□□□□ 0.38
USP48-204ENST00000400301 TMPRSS11EQ9UL52 423 aa17.42■□□□□ 0.38
USP48-204ENST00000400301 PLEKHM1Q9Y4G2 1056 aa17.42■□□□□ 0.38
USP48-204ENST00000400301 ZNF879B4DU55 563 aa17.42■□□□□ 0.38
USP48-204ENST00000400301 MAB21L1Q13394 359 aa17.42■□□□□ 0.38
USP48-204ENST00000400301 INAVAQ3KP66 663 aa17.42■□□□□ 0.38
USP48-204ENST00000400301 AMZ1Q400G9 498 aa17.42■□□□□ 0.38
USP48-204ENST00000400301 OR2L3Q8NG85 312 aa17.42■□□□□ 0.38
USP48-204ENST00000400301 PMEPA1Q969W9 287 aa17.42■□□□□ 0.38
USP48-204ENST00000400301 HSPA12BQ96MM6 686 aa17.42■□□□□ 0.38
USP48-204ENST00000400301 MMP28Q9H239 520 aa17.42■□□□□ 0.38
USP48-204ENST00000400301 DPAGT1Q9H3H5 408 aa17.42■□□□□ 0.38
USP48-204ENST00000400301 PRTFDC1Q9NRG1 225 aa17.42■□□□□ 0.38
USP48-204ENST00000400301 CA5BQ9Y2D0 317 aa17.42■□□□□ 0.38
USP48-204ENST00000400301 FKBP7Q9Y680 259 aa17.42■□□□□ 0.38
USP48-204ENST00000400301 CDH10Q9Y6N8 788 aa17.42■□□□□ 0.38
USP48-204ENST00000400301 TCRBV21S2A2A0A5A6 115 aa17.42■□□□□ 0.38
USP48-204ENST00000400301 ANKRD33BA6NCL7 494 aa17.42■□□□□ 0.38
USP48-204ENST00000400301 NPC1O15118 1278 aa17.42■□□□□ 0.38
USP48-204ENST00000400301 AQP9O43315 295 aa17.42■□□□□ 0.38
USP48-204ENST00000400301 SLC19A2O60779 497 aa17.42■□□□□ 0.38
USP48-204ENST00000400301 SCG5P05408 212 aa17.42■□□□□ 0.38
USP48-204ENST00000400301 RAE1P78406 368 aaKnown RBP17.42■□□□□ 0.38
USP48-204ENST00000400301 LTB4RQ15722 352 aa17.42■□□□□ 0.38
USP48-204ENST00000400301 DECR1Q16698 335 aa17.42■□□□□ 0.38
USP48-204ENST00000400301 AGAP7PQ5VUJ5 663 aa17.42■□□□□ 0.38
USP48-204ENST00000400301 ZNF527Q8NB42 609 aa17.42■□□□□ 0.38
USP48-204ENST00000400301 MMABQ96EY8 250 aaPredicted RBP17.42■□□□□ 0.38
USP48-204ENST00000400301 OR52A5Q9H2C5 316 aa17.42■□□□□ 0.38
USP48-204ENST00000400301 TRAV6A0A075B6T7 132 aa17.41■□□□□ 0.38
USP48-204ENST00000400301 WBP4O75554 376 aaKnown RBP17.41■□□□□ 0.38
USP48-204ENST00000400301 ITGA10O75578 1167 aa17.41■□□□□ 0.38
USP48-204ENST00000400301 CDKN3Q16667 212 aa17.41■□□□□ 0.38
USP48-204ENST00000400301 FCRLBQ6BAA4 426 aa17.41■□□□□ 0.38
USP48-204ENST00000400301 XKRXQ6PP77 449 aa17.41■□□□□ 0.38
USP48-204ENST00000400301 CDRT4Q8N9R6 151 aa17.41■□□□□ 0.38
USP48-204ENST00000400301 RFT1Q96AA3 541 aa17.41■□□□□ 0.38
USP48-204ENST00000400301 CHFRQ96EP1 664 aa17.41■□□□□ 0.38
USP48-204ENST00000400301 POLDIP3Q9BY77 421 aaKnown RBP17.41■□□□□ 0.38
USP48-204ENST00000400301 THAP10Q9P2Z0 257 aaPredicted RBP17.41■□□□□ 0.38
USP48-204ENST00000400301 HSPB11Q9Y547 144 aa17.41■□□□□ 0.38
USP48-204ENST00000400301 H3BSH0 61 aa17.41■□□□□ 0.38
USP48-204ENST00000400301 SCDO00767 359 aa17.41■□□□□ 0.38
USP48-204ENST00000400301 PRAMEF4O60810 478 aa17.41■□□□□ 0.38
USP48-204ENST00000400301 AK1P00568 194 aa17.41■□□□□ 0.38
USP48-204ENST00000400301 TACSTD2P09758 323 aa17.41■□□□□ 0.38
USP48-204ENST00000400301 ACP2P11117 423 aa17.41■□□□□ 0.38
USP48-204ENST00000400301 BCL6P41182 706 aa17.41■□□□□ 0.38
USP48-204ENST00000400301 EMP3P54852 163 aa17.41■□□□□ 0.38
USP48-204ENST00000400301 TSPAN31Q12999 210 aa17.41■□□□□ 0.38
USP48-204ENST00000400301 ALG11Q2TAA5 492 aa17.41■□□□□ 0.38
USP48-204ENST00000400301 PUS10Q3MIT2 529 aaKnown RBP17.41■□□□□ 0.38
USP48-204ENST00000400301 PRAMEF9Q5VWM5 478 aa17.41■□□□□ 0.38
USP48-204ENST00000400301 SAXO2Q658L1 398 aa17.41■□□□□ 0.38
USP48-204ENST00000400301 CNIH2Q6PI25 160 aa17.41■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms