RNA–Protein interactions for RNA: ENST00000399489.5

HMGB1-204, Transcript of high mobility group box 1, humanhuman

TSL 1 (best) BASIC

Gene HMGB1, Length 1,727 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-204ENST00000399489 GOLGA8IPA6NC78 632 aa3.68□□□□□ -1.82
HMGB1-204ENST00000399489 SRRM4A7MD48 611 aaKnown RBP3.68□□□□□ -1.82
HMGB1-204ENST00000399489 H0YL77 283 aa3.68□□□□□ -1.82
HMGB1-204ENST00000399489 H3BTX0 84 aa3.68□□□□□ -1.82
HMGB1-204ENST00000399489 P2RY10O00398 339 aa3.68□□□□□ -1.82
HMGB1-204ENST00000399489 CYTH3O43739 400 aa3.68□□□□□ -1.82
HMGB1-204ENST00000399489 NDUFS7O75251 213 aa3.68□□□□□ -1.82
HMGB1-204ENST00000399489 BMP10O95393 424 aa3.68□□□□□ -1.82
HMGB1-204ENST00000399489 GSTA2P09210 222 aa3.68□□□□□ -1.82
HMGB1-204ENST00000399489 PRF1P14222 555 aa3.68□□□□□ -1.82
HMGB1-204ENST00000399489 MSH3P20585 1137 aa3.68□□□□□ -1.82
HMGB1-204ENST00000399489 ACADSBP45954 432 aa3.68□□□□□ -1.82
HMGB1-204ENST00000399489 POU3F4P49335 361 aa3.68□□□□□ -1.82
HMGB1-204ENST00000399489 CLDN17P56750 224 aa3.68□□□□□ -1.82
HMGB1-204ENST00000399489 ZNF91Q05481 1191 aa3.68□□□□□ -1.82
HMGB1-204ENST00000399489 KLC1Q07866 573 aa3.68□□□□□ -1.82
HMGB1-204ENST00000399489 GPR50Q13585 617 aa3.68□□□□□ -1.82
HMGB1-204ENST00000399489 GK3PQ14409 553 aa3.68□□□□□ -1.82
HMGB1-204ENST00000399489 DMC1Q14565 340 aa3.68□□□□□ -1.82
HMGB1-204ENST00000399489 CASP8Q14790 479 aa3.68□□□□□ -1.82
HMGB1-204ENST00000399489 PHKG1Q16816 387 aa3.68□□□□□ -1.82
HMGB1-204ENST00000399489 SGSM1Q2NKQ1 1148 aa3.68□□□□□ -1.82
HMGB1-204ENST00000399489 SFT2D3Q587I9 215 aa3.68□□□□□ -1.82
HMGB1-204ENST00000399489 C10orf25Q5T742 122 aa3.68□□□□□ -1.82
HMGB1-204ENST00000399489 ASPHD1Q5U4P2 390 aa3.68□□□□□ -1.82
HMGB1-204ENST00000399489 THOC7Q6I9Y2 204 aaKnown RBP3.68□□□□□ -1.82
HMGB1-204ENST00000399489 TWF2Q6IBS0 349 aaKnown RBP3.68□□□□□ -1.82
HMGB1-204ENST00000399489 RTL6Q6ICC9 239 aa3.68□□□□□ -1.82
HMGB1-204ENST00000399489 CCDC137Q6PK04 289 aaKnown RBP3.68□□□□□ -1.82
HMGB1-204ENST00000399489 SSX9Q7RTT3 188 aa3.68□□□□□ -1.82
HMGB1-204ENST00000399489 DHDDSQ86SQ9 333 aa3.68□□□□□ -1.82
HMGB1-204ENST00000399489 GPSM1Q86YR5 675 aa3.68□□□□□ -1.82
HMGB1-204ENST00000399489 CHERPQ8IWX8 916 aaKnown RBP3.68□□□□□ -1.82
HMGB1-204ENST00000399489 ST13P4Q8IZP2 240 aaPredicted RBP3.68□□□□□ -1.82
HMGB1-204ENST00000399489 NAGSQ8N159 534 aa3.68□□□□□ -1.82
HMGB1-204ENST00000399489 GABRG1Q8N1C3 465 aa3.68□□□□□ -1.82
HMGB1-204ENST00000399489 KLHDC1Q8N7A1 406 aa3.68□□□□□ -1.82
HMGB1-204ENST00000399489 MLKLQ8NB16 471 aa3.68□□□□□ -1.82
HMGB1-204ENST00000399489 OR4D5Q8NGN0 318 aa3.68□□□□□ -1.82
HMGB1-204ENST00000399489 OR13C9Q8NGT0 318 aa3.68□□□□□ -1.82
HMGB1-204ENST00000399489 TMEM163Q8TC26 289 aa3.68□□□□□ -1.82
HMGB1-204ENST00000399489 SLC38A5Q8WUX1 472 aa3.68□□□□□ -1.82
HMGB1-204ENST00000399489 IRGQQ8WZA9 623 aa3.68□□□□□ -1.82
HMGB1-204ENST00000399489 TNFRSF14Q92956 283 aa3.68□□□□□ -1.82
HMGB1-204ENST00000399489 EME1Q96AY2 570 aa3.68□□□□□ -1.82
HMGB1-204ENST00000399489 ASB9Q96DX5 294 aa3.68□□□□□ -1.82
HMGB1-204ENST00000399489 ELMO2Q96JJ3 720 aa3.68□□□□□ -1.82
HMGB1-204ENST00000399489 ZNF317Q96PQ6 595 aaPredicted RBP3.68□□□□□ -1.82
HMGB1-204ENST00000399489 SELENOSQ9BQE4 189 aa3.68□□□□□ -1.82
HMGB1-204ENST00000399489 TMEM175Q9BSA9 504 aa3.68□□□□□ -1.82
HMGB1-204ENST00000399489 FUCA2Q9BTY2 467 aa3.68□□□□□ -1.82
HMGB1-204ENST00000399489 C9orf16Q9BUW7 83 aa3.68□□□□□ -1.82
HMGB1-204ENST00000399489 ST6GALNAC5Q9BVH7 336 aa3.68□□□□□ -1.82
HMGB1-204ENST00000399489 TSSK1BQ9BXA7 367 aa3.68□□□□□ -1.82
HMGB1-204ENST00000399489 MFFQ9GZY8 342 aa3.68□□□□□ -1.82
HMGB1-204ENST00000399489 LRRN3Q9H3W5 708 aa3.68□□□□□ -1.82
HMGB1-204ENST00000399489 AAMDCQ9H7C9 122 aa3.68□□□□□ -1.82
HMGB1-204ENST00000399489 LPAR2Q9HBW0 351 aa3.68□□□□□ -1.82
HMGB1-204ENST00000399489 RAVER2Q9HCJ3 691 aaKnown RBP3.68□□□□□ -1.82
HMGB1-204ENST00000399489 STAU2Q9NUL3 570 aaKnown RBP eCLIP3.68□□□□□ -1.82
HMGB1-204ENST00000399489 SMARCAL1Q9NZC9 954 aa3.68□□□□□ -1.82
HMGB1-204ENST00000399489 GNG12Q9UBI6 72 aa3.68□□□□□ -1.82
HMGB1-204ENST00000399489 PITPNC1Q9UKF7 332 aa3.68□□□□□ -1.82
HMGB1-204ENST00000399489 KLHDC2Q9Y2U9 406 aa3.68□□□□□ -1.82
HMGB1-204ENST00000399489 PPIL1Q9Y3C6 166 aa3.68□□□□□ -1.82
HMGB1-204ENST00000399489 ZNF175Q9Y473 711 aa3.68□□□□□ -1.82
HMGB1-204ENST00000399489 RAI2Q9Y5P3 530 aa3.68□□□□□ -1.82
HMGB1-204ENST00000399489 PRAG1Q86YV5 1406 aa3.68□□□□□ -1.82
HMGB1-204ENST00000399489 ERICH3Q5RHP9 1530 aa3.68□□□□□ -1.82
HMGB1-204ENST00000399489 ZMYM2Q9UBW7 1377 aa3.67□□□□□ -1.82
HMGB1-204ENST00000399489 SMCO3A2RU48 225 aa3.67□□□□□ -1.82
HMGB1-204ENST00000399489 PDZK1P1A8MUH7 402 aa3.67□□□□□ -1.82
HMGB1-204ENST00000399489 PRR32B1ATL7 298 aa3.67□□□□□ -1.82
HMGB1-204ENST00000399489 H3BNX3 289 aa3.67□□□□□ -1.82
HMGB1-204ENST00000399489 RS1O15537 224 aa3.67□□□□□ -1.82
HMGB1-204ENST00000399489 CALUO43852 315 aaPredicted RBP3.67□□□□□ -1.82
HMGB1-204ENST00000399489 TPST2O60704 377 aa3.67□□□□□ -1.82
HMGB1-204ENST00000399489 STK17BO94768 372 aa3.67□□□□□ -1.82
HMGB1-204ENST00000399489 CALCAP01258 141 aa3.67□□□□□ -1.82
HMGB1-204ENST00000399489 HLA-DRAP01903 254 aa3.67□□□□□ -1.82
HMGB1-204ENST00000399489 ACAA1P09110 424 aaPredicted RBP3.67□□□□□ -1.82
HMGB1-204ENST00000399489 FGF5P12034 268 aa3.67□□□□□ -1.82
HMGB1-204ENST00000399489 UQCRBP14927 111 aa3.67□□□□□ -1.82
HMGB1-204ENST00000399489 ARSBP15848 533 aa3.67□□□□□ -1.82
HMGB1-204ENST00000399489 TNNI1P19237 187 aa3.67□□□□□ -1.82
HMGB1-204ENST00000399489 SFTPDP35247 375 aa3.67□□□□□ -1.82
HMGB1-204ENST00000399489 PPP1R2P41236 205 aa3.67□□□□□ -1.82
HMGB1-204ENST00000399489 MAGEA9P43362 315 aa3.67□□□□□ -1.82
HMGB1-204ENST00000399489 GDI2P50395 445 aaKnown RBP3.67□□□□□ -1.82
HMGB1-204ENST00000399489 PDX1P52945 283 aa3.67□□□□□ -1.82
HMGB1-204ENST00000399489 ATP1B3P54709 279 aa3.67□□□□□ -1.82
HMGB1-204ENST00000399489 HERVK_113P63132 956 aa3.67□□□□□ -1.82
HMGB1-204ENST00000399489 ERVK-8P63133 956 aa3.67□□□□□ -1.82
HMGB1-204ENST00000399489 TNNC1P63316 161 aa3.67□□□□□ -1.82
HMGB1-204ENST00000399489 ITGB3BPQ13352 177 aaPredicted RBP3.67□□□□□ -1.82
HMGB1-204ENST00000399489 CEACAM7Q14002 265 aa3.67□□□□□ -1.82
HMGB1-204ENST00000399489 MESDQ14696 234 aa3.67□□□□□ -1.82
HMGB1-204ENST00000399489 MEF2DQ14814 521 aa3.67□□□□□ -1.82
HMGB1-204ENST00000399489 OR1C1Q15619 314 aa3.67□□□□□ -1.82
HMGB1-204ENST00000399489 ZNF699Q32M78 642 aa3.67□□□□□ -1.82
Retrieved 100 of 20,778 RNA–protein pairs in 48.7 ms