RNA–Protein interactions for RNA: ENST00000360579.11

VPS29-201, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 1,091 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-201ENST00000360579 SGCBQ16585 318 aa12.43□□□□□ -0.42
VPS29-201ENST00000360579 GLYR1Q49A26 553 aaPredicted RBP12.43□□□□□ -0.42
VPS29-201ENST00000360579 STAC2Q6ZMT1 411 aa12.43□□□□□ -0.42
VPS29-201ENST00000360579 BEND4Q6ZU67 534 aa12.43□□□□□ -0.42
VPS29-201ENST00000360579 STK32CQ86UX6 486 aa12.43□□□□□ -0.42
VPS29-201ENST00000360579 WFDC8Q8IUA0 241 aa12.43□□□□□ -0.42
VPS29-201ENST00000360579 SAMD14Q8IZD0 417 aaPredicted RBP12.43□□□□□ -0.42
VPS29-201ENST00000360579 CENPLQ8N0S6 344 aaPredicted RBP12.43□□□□□ -0.42
VPS29-201ENST00000360579 PPM1NQ8N819 430 aa12.43□□□□□ -0.42
VPS29-201ENST00000360579 OR2M3Q8NG83 312 aa12.43□□□□□ -0.42
VPS29-201ENST00000360579 KCTD4Q8WVF5 259 aa12.43□□□□□ -0.42
VPS29-201ENST00000360579 GTPBP3Q969Y2 492 aaKnown RBP12.43□□□□□ -0.42
VPS29-201ENST00000360579 GMPPAQ96IJ6 420 aaPredicted RBP12.43□□□□□ -0.42
VPS29-201ENST00000360579 VSTM2LQ96N03 204 aa12.43□□□□□ -0.42
VPS29-201ENST00000360579 ZNF681Q96N22 645 aa12.43□□□□□ -0.42
VPS29-201ENST00000360579 CDK15Q96Q40 435 aa12.43□□□□□ -0.42
VPS29-201ENST00000360579 NTMT1Q9BV86 223 aa12.43□□□□□ -0.42
VPS29-201ENST00000360579 PRRG4Q9BZD6 226 aa12.43□□□□□ -0.42
VPS29-201ENST00000360579 ACTR6Q9GZN1 396 aa12.43□□□□□ -0.42
VPS29-201ENST00000360579 DSN1Q9H410 356 aa12.43□□□□□ -0.42
VPS29-201ENST00000360579 ELOVL6Q9H5J4 265 aa12.43□□□□□ -0.42
VPS29-201ENST00000360579 NMRK1Q9NWW6 199 aa12.43□□□□□ -0.42
VPS29-201ENST00000360579 GPR52Q9Y2T5 361 aa12.43□□□□□ -0.42
VPS29-201ENST00000360579 SNX24Q9Y343 169 aa12.43□□□□□ -0.42
VPS29-201ENST00000360579 AP4B1Q9Y6B7 739 aa12.43□□□□□ -0.42
VPS29-201ENST00000360579 OR2M5A3KFT3 312 aa12.42□□□□□ -0.42
VPS29-201ENST00000360579 A8MV72 311 aaPredicted RBP12.42□□□□□ -0.42
VPS29-201ENST00000360579 H0YC42 278 aa12.42□□□□□ -0.42
VPS29-201ENST00000360579 H3BML4 177 aa12.42□□□□□ -0.42
VPS29-201ENST00000360579 OVOL3O00110 214 aa12.42□□□□□ -0.42
VPS29-201ENST00000360579 OR7A17O14581 309 aa12.42□□□□□ -0.42
VPS29-201ENST00000360579 SIX3O95343 332 aaPredicted RBP12.42□□□□□ -0.42
VPS29-201ENST00000360579 IL11P20809 199 aa12.42□□□□□ -0.42
VPS29-201ENST00000360579 ALDH9A1P49189 494 aa12.42□□□□□ -0.42
VPS29-201ENST00000360579 TPD52P55327 224 aaPredicted RBP12.42□□□□□ -0.42
VPS29-201ENST00000360579 CLDN20P56880 219 aa12.42□□□□□ -0.42
VPS29-201ENST00000360579 CORO7P57737 925 aa12.42□□□□□ -0.42
VPS29-201ENST00000360579 NAB1Q13506 487 aa12.42□□□□□ -0.42
VPS29-201ENST00000360579 LTB4RQ15722 352 aa12.42□□□□□ -0.42
VPS29-201ENST00000360579 ZNF628Q5EBL2 1059 aa12.42□□□□□ -0.42
VPS29-201ENST00000360579 OR52B6Q8NGF0 335 aa12.42□□□□□ -0.42
VPS29-201ENST00000360579 FBXW5Q969U6 566 aa12.42□□□□□ -0.42
VPS29-201ENST00000360579 EFHD2Q96C19 240 aaPredicted RBP12.42□□□□□ -0.42
VPS29-201ENST00000360579 TM4SF18Q96CE8 201 aa12.42□□□□□ -0.42
VPS29-201ENST00000360579 CNRIP1Q96F85 164 aaPredicted RBP12.42□□□□□ -0.42
VPS29-201ENST00000360579 ZBED6CLQ96FA7 236 aaPredicted RBP12.42□□□□□ -0.42
VPS29-201ENST00000360579 TACO1Q9BSH4 297 aaKnown RBP12.42□□□□□ -0.42
VPS29-201ENST00000360579 ZBTB26Q9HCK0 441 aa12.42□□□□□ -0.42
VPS29-201ENST00000360579 PFDN4Q9NQP4 134 aa12.42□□□□□ -0.42
VPS29-201ENST00000360579 GLRX2Q9NS18 164 aa12.42□□□□□ -0.42
VPS29-201ENST00000360579 PAQR5Q9NXK6 330 aaPredicted RBP12.42□□□□□ -0.42
VPS29-201ENST00000360579 WHRNQ9P202 907 aa12.42□□□□□ -0.42
VPS29-201ENST00000360579 UTS2RQ9UKP6 389 aa12.42□□□□□ -0.42
VPS29-201ENST00000360579 ABCG2Q9UNQ0 655 aa12.42□□□□□ -0.42
VPS29-201ENST00000360579 SLC12A4Q9UP95 1085 aa12.42□□□□□ -0.42
VPS29-201ENST00000360579 OR10H1Q9Y4A9 318 aa12.42□□□□□ -0.42
VPS29-201ENST00000360579 SNX8Q9Y5X2 465 aa12.42□□□□□ -0.42
VPS29-201ENST00000360579 ABCA1O95477 2261 aa12.41□□□□□ -0.42
VPS29-201ENST00000360579 B4DXG7 233 aa12.41□□□□□ -0.42
VPS29-201ENST00000360579 PHF1O43189 567 aaPredicted RBP12.41□□□□□ -0.42
VPS29-201ENST00000360579 SCO2O43819 266 aa12.41□□□□□ -0.42
VPS29-201ENST00000360579 SS18L1O75177 396 aaPredicted RBP12.41□□□□□ -0.42
VPS29-201ENST00000360579 AQP8O94778 261 aa12.41□□□□□ -0.42
VPS29-201ENST00000360579 FAM157CP0CG43 387 aa12.41□□□□□ -0.42
VPS29-201ENST00000360579 STX2P32856 288 aa12.41□□□□□ -0.42
VPS29-201ENST00000360579 CLK3P49761 638 aaKnown RBP12.41□□□□□ -0.42
VPS29-201ENST00000360579 DUSP2Q05923 314 aa12.41□□□□□ -0.42
VPS29-201ENST00000360579 GGTA1PQ4G0N0 100 aa12.41□□□□□ -0.42
VPS29-201ENST00000360579 NPSR1Q6W5P4 371 aa12.41□□□□□ -0.42
VPS29-201ENST00000360579 SLC44A2Q8IWA5 706 aaPredicted RBP12.41□□□□□ -0.42
VPS29-201ENST00000360579 UHMK1Q8TAS1 419 aaKnown RBP12.41□□□□□ -0.42
VPS29-201ENST00000360579 SLCO5A1Q9H2Y9 848 aa12.41□□□□□ -0.42
VPS29-201ENST00000360579 BRF2Q9HAW0 419 aa12.41□□□□□ -0.42
VPS29-201ENST00000360579 BARX1Q9HBU1 254 aaPredicted RBP12.41□□□□□ -0.42
VPS29-201ENST00000360579 NGBQ9NPG2 151 aa12.41□□□□□ -0.42
VPS29-201ENST00000360579 TAS2R9Q9NYW1 312 aa12.41□□□□□ -0.42
VPS29-201ENST00000360579 CPSF2Q9P2I0 782 aaKnown RBP12.41□□□□□ -0.42
VPS29-201ENST00000360579 TMCO1Q9UM00 188 aa12.41□□□□□ -0.42
VPS29-201ENST00000360579 RNF115Q9Y4L5 304 aa12.41□□□□□ -0.42
VPS29-201ENST00000360579 ZSCAN12O43309 604 aa12.4□□□□□ -0.42
VPS29-201ENST00000360579 KLHL2O95198 593 aa12.4□□□□□ -0.42
VPS29-201ENST00000360579 ESRRBO95718 433 aa12.4□□□□□ -0.42
VPS29-201ENST00000360579 C2P06681 752 aa12.4□□□□□ -0.42
VPS29-201ENST00000360579 FESP07332 822 aa12.4□□□□□ -0.42
VPS29-201ENST00000360579 PSMB1P20618 241 aaKnown RBP12.4□□□□□ -0.42
VPS29-201ENST00000360579 IRF9Q00978 393 aa12.4□□□□□ -0.42
VPS29-201ENST00000360579 GALNT1Q10472 559 aaPredicted RBP12.4□□□□□ -0.42
VPS29-201ENST00000360579 PPP4R4Q6NUP7 873 aa12.4□□□□□ -0.42
VPS29-201ENST00000360579 EXOC3L1Q86VI1 746 aa12.4□□□□□ -0.42
VPS29-201ENST00000360579 CCDC116Q8IYX3 515 aa12.4□□□□□ -0.42
VPS29-201ENST00000360579 PTGR2Q8N8N7 351 aaPredicted RBP12.4□□□□□ -0.42
VPS29-201ENST00000360579 STEAP2Q8NFT2 490 aa12.4□□□□□ -0.42
VPS29-201ENST00000360579 SMAP2Q8WU79 429 aaPredicted RBP12.4□□□□□ -0.42
VPS29-201ENST00000360579 C1GALT1C1Q96EU7 318 aa12.4□□□□□ -0.42
VPS29-201ENST00000360579 HDHD5Q9BXW7 423 aa12.4□□□□□ -0.42
VPS29-201ENST00000360579 ESRP2Q9H6T0 727 aaKnown RBP12.4□□□□□ -0.42
VPS29-201ENST00000360579 FOLH1BQ9HBA9 442 aa12.4□□□□□ -0.42
VPS29-201ENST00000360579 LRTM1Q9HBL6 345 aa12.4□□□□□ -0.42
VPS29-201ENST00000360579 GIMAP4Q9NUV9 329 aa12.4□□□□□ -0.42
VPS29-201ENST00000360579 MED11Q9P086 117 aa12.4□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms