RNA–Protein interactions for RNA: ENST00000341423.9

HMGB1-203, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HMGB1, Length 5,485 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-203ENST00000341423 SPIBQ01892 262 aa7.87□□□□□ -1.15
HMGB1-203ENST00000341423 GALNT2Q10471 571 aa7.87□□□□□ -1.15
HMGB1-203ENST00000341423 NIPAL3Q6P499 406 aa7.87□□□□□ -1.15
HMGB1-203ENST00000341423 FUBP1Q96AE4 644 aaKnown RBP7.87□□□□□ -1.15
HMGB1-203ENST00000341423 CDK15Q96Q40 435 aa7.87□□□□□ -1.15
HMGB1-203ENST00000341423 C1orf50Q9BV19 199 aa7.87□□□□□ -1.15
HMGB1-203ENST00000341423 C1orf198Q9H425 327 aa7.87□□□□□ -1.15
HMGB1-203ENST00000341423 SLC35C2Q9NQQ7 365 aa7.87□□□□□ -1.15
HMGB1-203ENST00000341423 TMEM5Q9Y2B1 443 aa7.87□□□□□ -1.15
HMGB1-203ENST00000341423 PHRF1Q9P1Y6 1649 aaKnown RBP7.87□□□□□ -1.15
HMGB1-203ENST00000341423 ZG16O60844 167 aa7.87□□□□□ -1.15
HMGB1-203ENST00000341423 TACSTD2P09758 323 aa7.87□□□□□ -1.15
HMGB1-203ENST00000341423 ZNF16P17020 682 aaPredicted RBP7.87□□□□□ -1.15
HMGB1-203ENST00000341423 RAB13P51153 203 aa7.87□□□□□ -1.15
HMGB1-203ENST00000341423 DAP3P51398 398 aaKnown RBP7.87□□□□□ -1.15
HMGB1-203ENST00000341423 SLC35B1P78383 322 aa7.87□□□□□ -1.15
HMGB1-203ENST00000341423 PDK3Q15120 406 aa7.87□□□□□ -1.15
HMGB1-203ENST00000341423 ZNF836Q6ZNA1 936 aa7.87□□□□□ -1.15
HMGB1-203ENST00000341423 LRRC34Q8IZ02 419 aa7.87□□□□□ -1.15
HMGB1-203ENST00000341423 FAM109AQ8N4B1 249 aa7.87□□□□□ -1.15
HMGB1-203ENST00000341423 AADATQ8N5Z0 425 aa7.87□□□□□ -1.15
HMGB1-203ENST00000341423 ZNF565Q8N9K5 539 aa7.87□□□□□ -1.15
HMGB1-203ENST00000341423 B3GNT7Q8NFL0 401 aa7.87□□□□□ -1.15
HMGB1-203ENST00000341423 OR52N5Q8NH56 324 aa7.87□□□□□ -1.15
HMGB1-203ENST00000341423 ZFP3Q96NJ6 502 aa7.87□□□□□ -1.15
HMGB1-203ENST00000341423 SPRTNQ9H040 489 aaPredicted RBP7.87□□□□□ -1.15
HMGB1-203ENST00000341423 PLK3Q9H4B4 646 aa7.87□□□□□ -1.15
HMGB1-203ENST00000341423 WBP11Q9Y2W2 641 aaKnown RBP7.87□□□□□ -1.15
HMGB1-203ENST00000341423 H0YIG0 161 aa7.86□□□□□ -1.15
HMGB1-203ENST00000341423 GFYI3L273 518 aa7.86□□□□□ -1.15
HMGB1-203ENST00000341423 M0R233 179 aa7.86□□□□□ -1.15
HMGB1-203ENST00000341423 PSMD9O00233 223 aa7.86□□□□□ -1.15
HMGB1-203ENST00000341423 SLC1A7O00341 560 aa7.86□□□□□ -1.15
HMGB1-203ENST00000341423 TPST1O60507 370 aa7.86□□□□□ -1.15
HMGB1-203ENST00000341423 GPR75O95800 540 aa7.86□□□□□ -1.15
HMGB1-203ENST00000341423 SERPINA6P08185 405 aa7.86□□□□□ -1.15
HMGB1-203ENST00000341423 CLDN15P56746 228 aa7.86□□□□□ -1.15
HMGB1-203ENST00000341423 GUCY1A3Q02108 690 aa7.86□□□□□ -1.15
HMGB1-203ENST00000341423 OR7A5Q15622 319 aa7.86□□□□□ -1.15
HMGB1-203ENST00000341423 TIPARPQ7Z3E1 657 aaKnown RBP7.86□□□□□ -1.15
HMGB1-203ENST00000341423 CCDC71Q8IV32 467 aaPredicted RBP7.86□□□□□ -1.15
HMGB1-203ENST00000341423 FAM185AQ8N0U4 392 aa7.86□□□□□ -1.15
HMGB1-203ENST00000341423 OR51G2Q8NGK0 314 aa7.86□□□□□ -1.15
HMGB1-203ENST00000341423 KCTD12Q96CX2 325 aaKnown RBP7.86□□□□□ -1.15
HMGB1-203ENST00000341423 RTP4Q96DX8 246 aa7.86□□□□□ -1.15
HMGB1-203ENST00000341423 FAM46AQ96IP4 442 aaKnown RBP7.86□□□□□ -1.15
HMGB1-203ENST00000341423 COL21A1Q96P44 957 aa7.86□□□□□ -1.15
HMGB1-203ENST00000341423 DTLQ9NZJ0 730 aa7.86□□□□□ -1.15
HMGB1-203ENST00000341423 CASZ1Q86V15 1759 aa7.86□□□□□ -1.15
HMGB1-203ENST00000341423 C12orf71A8MTZ7 269 aa7.86□□□□□ -1.15
HMGB1-203ENST00000341423 RAC2P15153 192 aa7.86□□□□□ -1.15
HMGB1-203ENST00000341423 PRPS1L1P21108 318 aa7.86□□□□□ -1.15
HMGB1-203ENST00000341423 LTBRP36941 435 aa7.86□□□□□ -1.15
HMGB1-203ENST00000341423 GLP1RP43220 463 aa7.86□□□□□ -1.15
HMGB1-203ENST00000341423 LCP2Q13094 533 aa7.86□□□□□ -1.15
HMGB1-203ENST00000341423 ZNF846Q147U1 533 aa7.86□□□□□ -1.15
HMGB1-203ENST00000341423 CYTH1Q15438 398 aa7.86□□□□□ -1.15
HMGB1-203ENST00000341423 SCML4Q8N228 414 aa7.86□□□□□ -1.15
HMGB1-203ENST00000341423 OR4N2Q8NGD1 307 aa7.86□□□□□ -1.15
HMGB1-203ENST00000341423 TBC1D15Q8TC07 691 aa7.86□□□□□ -1.15
HMGB1-203ENST00000341423 DNASE2BQ8WZ79 361 aa7.86□□□□□ -1.15
HMGB1-203ENST00000341423 BSCL2Q96G97 398 aaPredicted RBP7.86□□□□□ -1.15
HMGB1-203ENST00000341423 PIGMQ9H3S5 423 aa7.86□□□□□ -1.15
HMGB1-203ENST00000341423 ZFP64Q9NPA5 681 aa7.86□□□□□ -1.15
HMGB1-203ENST00000341423 OCIAD1Q9NX40 245 aa7.86□□□□□ -1.15
HMGB1-203ENST00000341423 PDE10AQ9Y233 779 aa7.86□□□□□ -1.15
HMGB1-203ENST00000341423 EIF3FO00303 357 aaPredicted RBP7.86□□□□□ -1.15
HMGB1-203ENST00000341423 CNIH1O95406 144 aa7.86□□□□□ -1.15
HMGB1-203ENST00000341423 SFTPBP07988 381 aa7.86□□□□□ -1.15
HMGB1-203ENST00000341423 ZNF23P17027 643 aa7.86□□□□□ -1.15
HMGB1-203ENST00000341423 CBLP22681 906 aa7.86□□□□□ -1.15
HMGB1-203ENST00000341423 MAGEA2P43356 314 aa7.86□□□□□ -1.15
HMGB1-203ENST00000341423 ARPC4P59998 168 aa7.86□□□□□ -1.15
HMGB1-203ENST00000341423 PRDX1Q06830 199 aaKnown RBP7.86□□□□□ -1.15
HMGB1-203ENST00000341423 TBR1Q16650 682 aa7.86□□□□□ -1.15
HMGB1-203ENST00000341423 SLC27A4Q6P1M0 643 aa7.86□□□□□ -1.15
HMGB1-203ENST00000341423 BLOC1S3Q6QNY0 202 aa7.86□□□□□ -1.15
HMGB1-203ENST00000341423 OLFML1Q6UWY5 402 aa7.86□□□□□ -1.15
HMGB1-203ENST00000341423 TRILQ7L0X0 811 aa7.86□□□□□ -1.15
HMGB1-203ENST00000341423 GDPD3Q7L5L3 318 aa7.86□□□□□ -1.15
HMGB1-203ENST00000341423 SLC36A1Q7Z2H8 476 aa7.86□□□□□ -1.15
HMGB1-203ENST00000341423 OFCC1Q8IZS5 231 aa7.86□□□□□ -1.15
HMGB1-203ENST00000341423 MAGEE2Q8TD90 523 aaPredicted RBP7.86□□□□□ -1.15
HMGB1-203ENST00000341423 EID2BQ96D98 161 aa7.86□□□□□ -1.15
HMGB1-203ENST00000341423 UBQLN4Q9NRR5 601 aa7.86□□□□□ -1.15
HMGB1-203ENST00000341423 LANCL2Q9NS86 450 aa7.86□□□□□ -1.15
HMGB1-203ENST00000341423 CUEDC1Q9NWM3 386 aaPredicted RBP7.86□□□□□ -1.15
HMGB1-203ENST00000341423 PTTG2Q9NZH5 202 aa7.86□□□□□ -1.15
HMGB1-203ENST00000341423 TBC1D29Q9UFV1 150 aa7.86□□□□□ -1.15
HMGB1-203ENST00000341423 MYO5BQ9ULV0 1848 aa7.86□□□□□ -1.15
HMGB1-203ENST00000341423 TRBV23-1A0A0A0MS06 115 aa7.86□□□□□ -1.15
HMGB1-203ENST00000341423 E9PQ18 207 aa7.86□□□□□ -1.15
HMGB1-203ENST00000341423 KLF11O14901 512 aa7.86□□□□□ -1.15
HMGB1-203ENST00000341423 RAD51DO75771 328 aa7.86□□□□□ -1.15
HMGB1-203ENST00000341423 OR5F1O95221 314 aa7.86□□□□□ -1.15
HMGB1-203ENST00000341423 TNFAIP8O95379 198 aa7.86□□□□□ -1.15
HMGB1-203ENST00000341423 TSPAN19P0C672 248 aa7.86□□□□□ -1.15
HMGB1-203ENST00000341423 AHRP35869 848 aa7.86□□□□□ -1.15
HMGB1-203ENST00000341423 CLDN6P56747 220 aa7.86□□□□□ -1.15
HMGB1-203ENST00000341423 TXNL4AP83876 142 aaKnown RBP7.86□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms