RNA–Protein interactions for RNA: ENST00000339859.8

USP54-201, Transcript of ubiquitin specific peptidase 54, humanhuman

APPRIS P1 TSL 5 BASIC

Gene USP54, Length 6,247 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-201ENST00000339859 MAOAP21397 527 aa9.52□□□□□ -0.88
USP54-201ENST00000339859 GFERP55789 205 aa9.52□□□□□ -0.88
USP54-201ENST00000339859 CPZQ66K79 652 aa9.52□□□□□ -0.88
USP54-201ENST00000339859 BICRALQ6AI39 1079 aa9.52□□□□□ -0.88
USP54-201ENST00000339859 SLC48A1Q6P1K1 146 aa9.52□□□□□ -0.88
USP54-201ENST00000339859 AMER2Q8N7J2 671 aa9.52□□□□□ -0.88
USP54-201ENST00000339859 ZNF283Q8N7M2 679 aa9.52□□□□□ -0.88
USP54-201ENST00000339859 ZNF676Q8N7Q3 588 aa9.52□□□□□ -0.88
USP54-201ENST00000339859 PCDHB16Q9NRJ7 776 aa9.52□□□□□ -0.88
USP54-201ENST00000339859 GLS2Q9UI32 602 aa9.52□□□□□ -0.88
USP54-201ENST00000339859 KLF13Q9Y2Y9 288 aaPredicted RBP9.52□□□□□ -0.88
USP54-201ENST00000339859 SCN1AP35498 2009 aa9.52□□□□□ -0.89
USP54-201ENST00000339859 PGRMC2O15173 223 aa9.52□□□□□ -0.89
USP54-201ENST00000339859 KHDRBS3O75525 346 aaKnown RBP9.52□□□□□ -0.89
USP54-201ENST00000339859 RAB36O95755 333 aa9.52□□□□□ -0.89
USP54-201ENST00000339859 SF3A2Q15428 464 aaKnown RBP9.52□□□□□ -0.89
USP54-201ENST00000339859 RPS26P11Q5JNZ5 115 aaPredicted RBP9.52□□□□□ -0.89
USP54-201ENST00000339859 SPANXN2Q5MJ10 180 aa9.52□□□□□ -0.89
USP54-201ENST00000339859 SWT1Q5T5J6 900 aaKnown RBP9.52□□□□□ -0.89
USP54-201ENST00000339859 PRAMEF8Q5VWM4 474 aa9.52□□□□□ -0.89
USP54-201ENST00000339859 PRAMEF7Q5VXH5 474 aa9.52□□□□□ -0.89
USP54-201ENST00000339859 AHSA2Q719I0 299 aa9.52□□□□□ -0.89
USP54-201ENST00000339859 CPEB2Q7Z5Q1 589 aaKnown RBP9.52□□□□□ -0.89
USP54-201ENST00000339859 TP53INP1Q96A56 240 aa9.52□□□□□ -0.89
USP54-201ENST00000339859 HSPBAP1Q96EW2 488 aa9.52□□□□□ -0.89
USP54-201ENST00000339859 SGPP1Q9BX95 441 aa9.52□□□□□ -0.89
USP54-201ENST00000339859 ITGA10O75578 1167 aa9.52□□□□□ -0.89
USP54-201ENST00000339859 PEPDP12955 493 aa9.52□□□□□ -0.89
USP54-201ENST00000339859 PCBP4P57723 403 aaKnown RBP9.52□□□□□ -0.89
USP54-201ENST00000339859 POU4F2Q12837 409 aa9.52□□□□□ -0.89
USP54-201ENST00000339859 IL10RAQ13651 578 aa9.52□□□□□ -0.89
USP54-201ENST00000339859 GRAMD2AQ8IUY3 354 aa9.52□□□□□ -0.89
USP54-201ENST00000339859 NT5CQ8TCD5 201 aa9.52□□□□□ -0.89
USP54-201ENST00000339859 COQ8BQ96D53 544 aa9.52□□□□□ -0.89
USP54-201ENST00000339859 CDH20Q9HBT6 801 aa9.52□□□□□ -0.89
USP54-201ENST00000339859 EMC9Q9Y3B6 208 aa9.52□□□□□ -0.89
USP54-201ENST00000339859 PHYHO14832 338 aa9.52□□□□□ -0.89
USP54-201ENST00000339859 ZNF208O43345 1280 aa9.52□□□□□ -0.89
USP54-201ENST00000339859 DNASE1L3Q13609 305 aa9.52□□□□□ -0.89
USP54-201ENST00000339859 MPP2Q14168 576 aa9.52□□□□□ -0.89
USP54-201ENST00000339859 C5orf46Q6UWT4 87 aa9.52□□□□□ -0.89
USP54-201ENST00000339859 HMGN2P46Q86SG4 172 aa9.52□□□□□ -0.89
USP54-201ENST00000339859 NAGSQ8N159 534 aa9.52□□□□□ -0.89
USP54-201ENST00000339859 FCGR1BQ92637 280 aa9.52□□□□□ -0.89
USP54-201ENST00000339859 MS4A6EQ96DS6 147 aa9.52□□□□□ -0.89
USP54-201ENST00000339859 POLE3Q9NRF9 147 aa9.52□□□□□ -0.89
USP54-201ENST00000339859 HCRTR1O43613 425 aa9.52□□□□□ -0.89
USP54-201ENST00000339859 MYF5P13349 255 aa9.52□□□□□ -0.89
USP54-201ENST00000339859 IRF2P14316 349 aa9.52□□□□□ -0.89
USP54-201ENST00000339859 ILKQ13418 452 aa9.52□□□□□ -0.89
USP54-201ENST00000339859 IL18R1Q13478 541 aa9.52□□□□□ -0.89
USP54-201ENST00000339859 EXOC3L2Q2M3D2 409 aa9.52□□□□□ -0.89
USP54-201ENST00000339859 MEDAGQ5VYS4 303 aa9.52□□□□□ -0.89
USP54-201ENST00000339859 TRIM46Q7Z4K8 759 aa9.52□□□□□ -0.89
USP54-201ENST00000339859 TBX5Q99593 518 aa9.52□□□□□ -0.89
USP54-201ENST00000339859 WDR83Q9BRX9 315 aaKnown RBP9.52□□□□□ -0.89
USP54-201ENST00000339859 TAS2R10Q9NYW0 307 aa9.52□□□□□ -0.89
USP54-201ENST00000339859 SLC6A5Q9Y345 797 aa9.52□□□□□ -0.89
USP54-201ENST00000339859 GFRA3O60609 400 aa9.51□□□□□ -0.89
USP54-201ENST00000339859 IGHA2P01877 340 aa9.51□□□□□ -0.89
USP54-201ENST00000339859 SPARCP09486 303 aa9.51□□□□□ -0.89
USP54-201ENST00000339859 ETS2P15036 469 aa9.51□□□□□ -0.89
USP54-201ENST00000339859 ETV4P43268 484 aa9.51□□□□□ -0.89
USP54-201ENST00000339859 C17orf67Q0P5P2 114 aa9.51□□□□□ -0.89
USP54-201ENST00000339859 MELKQ14680 651 aa9.51□□□□□ -0.89
USP54-201ENST00000339859 SERPINA11Q86U17 422 aa9.51□□□□□ -0.89
USP54-201ENST00000339859 SATL1Q86VE3 508 aa9.51□□□□□ -0.89
USP54-201ENST00000339859 RADILQ96JH8 1075 aa9.51□□□□□ -0.89
USP54-201ENST00000339859 COQ10BQ9H8M1 238 aa9.51□□□□□ -0.89
USP54-201ENST00000339859 TTC3P53804 2025 aa9.51□□□□□ -0.89
USP54-201ENST00000339859 PTPRFP10586 1907 aa9.51□□□□□ -0.89
USP54-201ENST00000339859 FMO6PO60774 539 aa9.51□□□□□ -0.89
USP54-201ENST00000339859 CH25HO95992 272 aa9.51□□□□□ -0.89
USP54-201ENST00000339859 GCAP28676 217 aa9.51□□□□□ -0.89
USP54-201ENST00000339859 TGFBR3Q03167 851 aa9.51□□□□□ -0.89
USP54-201ENST00000339859 SLC14A1Q13336 389 aa9.51□□□□□ -0.89
USP54-201ENST00000339859 FAM53BQ14153 422 aa9.51□□□□□ -0.89
USP54-201ENST00000339859 ZNF433Q8N7K0 673 aaPredicted RBP9.51□□□□□ -0.89
USP54-201ENST00000339859 C9orf43Q8TAL5 461 aaPredicted RBP9.51□□□□□ -0.89
USP54-201ENST00000339859 CHTF18Q8WVB6 975 aa9.51□□□□□ -0.89
USP54-201ENST00000339859 SORT1Q99523 831 aa9.51□□□□□ -0.89
USP54-201ENST00000339859 PCDHGA8Q9Y5G5 932 aa9.51□□□□□ -0.89
USP54-201ENST00000339859 THSD7BQ9C0I4 1608 aa9.51□□□□□ -0.89
USP54-201ENST00000339859 GXYLT2A0PJZ3 443 aa9.51□□□□□ -0.89
USP54-201ENST00000339859 HTR1AP08908 422 aa9.51□□□□□ -0.89
USP54-201ENST00000339859 H2BFMP0C1H6 154 aa9.51□□□□□ -0.89
USP54-201ENST00000339859 PSMA1P25786 263 aaKnown RBP9.51□□□□□ -0.89
USP54-201ENST00000339859 NR1H2P55055 460 aa9.51□□□□□ -0.89
USP54-201ENST00000339859 ZXDBP98169 803 aa9.51□□□□□ -0.89
USP54-201ENST00000339859 RIPK1Q13546 671 aa9.51□□□□□ -0.89
USP54-201ENST00000339859 C18orf63Q68DL7 685 aa9.51□□□□□ -0.89
USP54-201ENST00000339859 C1orf94Q6P1W5 598 aa9.51□□□□□ -0.89
USP54-201ENST00000339859 KCTD18Q6PI47 426 aaPredicted RBP9.51□□□□□ -0.89
USP54-201ENST00000339859 ERMP1Q7Z2K6 904 aa9.51□□□□□ -0.89
USP54-201ENST00000339859 RNF175Q8N4F7 328 aa9.51□□□□□ -0.89
USP54-201ENST00000339859 CNEP1R1Q8N9A8 125 aa9.51□□□□□ -0.89
USP54-201ENST00000339859 OR5D16Q8NGK9 328 aa9.51□□□□□ -0.89
USP54-201ENST00000339859 TEX10Q9NXF1 929 aaPredicted RBP9.51□□□□□ -0.89
USP54-201ENST00000339859 GPR83Q9NYM4 423 aa9.51□□□□□ -0.89
USP54-201ENST00000339859 PRAMEF25A6NGN4 478 aa9.51□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms