RNA–Protein interactions for RNA: ENST00000328333.12

COL7A1-201, Transcript of collagen type VII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL7A1, Length 9,276 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-201ENST00000328333 PIGVQ9NUD9 493 aa13.59□□□□□ -0.23
COL7A1-201ENST00000328333 C1orf226A1L170 272 aa13.58□□□□□ -0.23
COL7A1-201ENST00000328333 TNFRSF10AO00220 468 aa13.58□□□□□ -0.23
COL7A1-201ENST00000328333 RAB3DO95716 219 aa13.58□□□□□ -0.23
COL7A1-201ENST00000328333 TRAPPC2P0DI81 140 aa13.58□□□□□ -0.23
COL7A1-201ENST00000328333 TRAPPC2BP0DI82 140 aa13.58□□□□□ -0.23
COL7A1-201ENST00000328333 ARSBP15848 533 aa13.58□□□□□ -0.23
COL7A1-201ENST00000328333 INCA1Q0VD86 236 aa13.58□□□□□ -0.23
COL7A1-201ENST00000328333 HSD3B7Q9H2F3 369 aa13.58□□□□□ -0.23
COL7A1-201ENST00000328333 ARVCFO00192 962 aa13.58□□□□□ -0.24
COL7A1-201ENST00000328333 SCAMP2O15127 329 aaKnown RBP13.58□□□□□ -0.24
COL7A1-201ENST00000328333 TLL1O43897 1013 aa13.58□□□□□ -0.24
COL7A1-201ENST00000328333 HSD17B7P56937 341 aa13.58□□□□□ -0.24
COL7A1-201ENST00000328333 BEX3Q00994 111 aa13.58□□□□□ -0.24
COL7A1-201ENST00000328333 MAP2K5Q13163 448 aa13.58□□□□□ -0.24
COL7A1-201ENST00000328333 MOB1BQ7L9L4 216 aa13.58□□□□□ -0.24
COL7A1-201ENST00000328333 MAMDC2Q7Z304 686 aaPredicted RBP13.58□□□□□ -0.24
COL7A1-201ENST00000328333 NPAS4Q8IUM7 802 aa13.58□□□□□ -0.24
COL7A1-201ENST00000328333 C1orf74Q96LT6 269 aa13.58□□□□□ -0.24
COL7A1-201ENST00000328333 TSSK2Q96PF2 358 aa13.58□□□□□ -0.24
COL7A1-201ENST00000328333 FZD3Q9NPG1 666 aa13.58□□□□□ -0.24
COL7A1-201ENST00000328333 CTPS2Q9NRF8 586 aa13.58□□□□□ -0.24
COL7A1-201ENST00000328333 POT1Q9NUX5 634 aa13.58□□□□□ -0.24
COL7A1-201ENST00000328333 ETV7Q9Y603 341 aa13.58□□□□□ -0.24
COL7A1-201ENST00000328333 VSTM2BA6NLU5 285 aa13.58□□□□□ -0.24
COL7A1-201ENST00000328333 FANCGO15287 622 aa13.58□□□□□ -0.24
COL7A1-201ENST00000328333 B4GALT5O43286 388 aa13.58□□□□□ -0.24
COL7A1-201ENST00000328333 KDELR2P33947 212 aa13.58□□□□□ -0.24
COL7A1-201ENST00000328333 ZC3H14Q6PJT7 736 aaKnown RBP13.58□□□□□ -0.24
COL7A1-201ENST00000328333 OR5W2Q8NH69 310 aa13.58□□□□□ -0.24
COL7A1-201ENST00000328333 RBFOX1Q9NWB1 397 aaKnown RBP13.58□□□□□ -0.24
COL7A1-201ENST00000328333 TAC3Q9UHF0 121 aa13.58□□□□□ -0.24
COL7A1-201ENST00000328333 MCM3APO60318 1980 aa13.58□□□□□ -0.24
COL7A1-201ENST00000328333 ZNF407Q9C0G0 2248 aa13.58□□□□□ -0.24
COL7A1-201ENST00000328333 C2orf72A6NCS6 295 aa13.58□□□□□ -0.24
COL7A1-201ENST00000328333 CCL22O00626 93 aa13.58□□□□□ -0.24
COL7A1-201ENST00000328333 SYNGR4O95473 234 aa13.58□□□□□ -0.24
COL7A1-201ENST00000328333 METTL15P1P0C7V9 234 aa13.58□□□□□ -0.24
COL7A1-201ENST00000328333 PI4KAP42356 2102 aa13.58□□□□□ -0.24
COL7A1-201ENST00000328333 UBE2KP61086 200 aa13.58□□□□□ -0.24
COL7A1-201ENST00000328333 RPS15AP62244 130 aaKnown RBP13.58□□□□□ -0.24
COL7A1-201ENST00000328333 VEZF1Q14119 521 aa13.58□□□□□ -0.24
COL7A1-201ENST00000328333 ZNF266Q14584 549 aa13.58□□□□□ -0.24
COL7A1-201ENST00000328333 HIST2H3PS2Q5TEC6 136 aa13.58□□□□□ -0.24
COL7A1-201ENST00000328333 PIM3Q86V86 326 aa13.58□□□□□ -0.24
COL7A1-201ENST00000328333 OR6Q1Q8NGQ2 317 aa13.58□□□□□ -0.24
COL7A1-201ENST00000328333 C1orf123Q9NWV4 160 aa13.58□□□□□ -0.24
COL7A1-201ENST00000328333 ANGPTL7O43827 346 aa13.58□□□□□ -0.24
COL7A1-201ENST00000328333 FADS1O60427 444 aa13.58□□□□□ -0.24
COL7A1-201ENST00000328333 CSTAP01040 98 aa13.58□□□□□ -0.24
COL7A1-201ENST00000328333 ALDOBP05062 364 aa13.58□□□□□ -0.24
COL7A1-201ENST00000328333 HTR3AP46098 478 aa13.58□□□□□ -0.24
COL7A1-201ENST00000328333 DACT2Q5SW24 774 aa13.58□□□□□ -0.24
COL7A1-201ENST00000328333 LINGO4Q6UY18 593 aa13.58□□□□□ -0.24
COL7A1-201ENST00000328333 ADAMTS16Q8TE57 1224 aa13.58□□□□□ -0.24
COL7A1-201ENST00000328333 PGAM5Q96HS1 289 aa13.58□□□□□ -0.24
COL7A1-201ENST00000328333 TXNL4BQ9NX01 149 aaKnown RBP13.58□□□□□ -0.24
COL7A1-201ENST00000328333 A3GALT2U3KPV4 340 aa13.58□□□□□ -0.24
COL7A1-201ENST00000328333 IMPA2O14732 288 aa13.58□□□□□ -0.24
COL7A1-201ENST00000328333 KLK3P07288 261 aaPredicted RBP13.58□□□□□ -0.24
COL7A1-201ENST00000328333 STSP08842 583 aa13.58□□□□□ -0.24
COL7A1-201ENST00000328333 JUPP14923 745 aa13.58□□□□□ -0.24
COL7A1-201ENST00000328333 CD163Q86VB7 1156 aa13.58□□□□□ -0.24
COL7A1-201ENST00000328333 PINK1Q9BXM7 581 aa13.58□□□□□ -0.24
COL7A1-201ENST00000328333 BCO2Q9BYV7 579 aa13.58□□□□□ -0.24
COL7A1-201ENST00000328333 ADAM19Q9H013 955 aa13.58□□□□□ -0.24
COL7A1-201ENST00000328333 DPEP1P16444 411 aa13.58□□□□□ -0.24
COL7A1-201ENST00000328333 CLEC20AQ6ZU45 233 aa13.58□□□□□ -0.24
COL7A1-201ENST00000328333 LYSMD3Q7Z3D4 306 aa13.58□□□□□ -0.24
COL7A1-201ENST00000328333 PUM2Q8TB72 1066 aaKnown RBP eCLIP13.58□□□□□ -0.24
COL7A1-201ENST00000328333 ASB17Q8WXJ9 295 aa13.58□□□□□ -0.24
COL7A1-201ENST00000328333 NANOS1Q8WY41 292 aaKnown RBP13.58□□□□□ -0.24
COL7A1-201ENST00000328333 CWH43Q9H720 699 aa13.58□□□□□ -0.24
COL7A1-201ENST00000328333 MVB12BQ9H7P6 319 aa13.58□□□□□ -0.24
COL7A1-201ENST00000328333 CD84Q9UIB8 345 aa13.58□□□□□ -0.24
COL7A1-201ENST00000328333 C17orf112F2Z3M2 114 aa13.57□□□□□ -0.24
COL7A1-201ENST00000328333 MMP2P08253 660 aa13.57□□□□□ -0.24
COL7A1-201ENST00000328333 SNRPD2P62316 118 aaKnown RBP13.57□□□□□ -0.24
COL7A1-201ENST00000328333 KIAA0319Q5VV43 1072 aa13.57□□□□□ -0.24
COL7A1-201ENST00000328333 DPPA2Q7Z7J5 298 aa13.57□□□□□ -0.24
COL7A1-201ENST00000328333 UHRF1Q96T88 793 aaPredicted RBP13.57□□□□□ -0.24
COL7A1-201ENST00000328333 GPR20Q99678 358 aa13.57□□□□□ -0.24
COL7A1-201ENST00000328333 SIX2Q9NPC8 291 aa13.57□□□□□ -0.24
COL7A1-201ENST00000328333 SACM1LQ9NTJ5 587 aa13.57□□□□□ -0.24
COL7A1-201ENST00000328333 PRELID3BQ9Y3B1 194 aa13.57□□□□□ -0.24
COL7A1-201ENST00000328333 RPS10-NUDT3A0A1W2PQS6 291 aa13.57□□□□□ -0.24
COL7A1-201ENST00000328333 BLACEA4D250 179 aa13.57□□□□□ -0.24
COL7A1-201ENST00000328333 YJEFN3A6XGL0 299 aa13.57□□□□□ -0.24
COL7A1-201ENST00000328333 SEC14L5O43304 696 aa13.57□□□□□ -0.24
COL7A1-201ENST00000328333 TK1P04183 234 aa13.57□□□□□ -0.24
COL7A1-201ENST00000328333 PRKAR1BP31321 381 aa13.57□□□□□ -0.24
COL7A1-201ENST00000328333 RPS10P46783 165 aaKnown RBP13.57□□□□□ -0.24
COL7A1-201ENST00000328333 ARSJQ5FYB0 599 aaPredicted RBP13.57□□□□□ -0.24
COL7A1-201ENST00000328333 GTF2H5Q6ZYL4 71 aa13.57□□□□□ -0.24
COL7A1-201ENST00000328333 KANSL1Q7Z3B3 1105 aa13.57□□□□□ -0.24
COL7A1-201ENST00000328333 NDNFQ8TB73 568 aa13.57□□□□□ -0.24
COL7A1-201ENST00000328333 AIG1Q9NVV5 245 aa13.57□□□□□ -0.24
COL7A1-201ENST00000328333 SCN5AQ14524 2016 aa13.57□□□□□ -0.24
COL7A1-201ENST00000328333 A6NIZ1 184 aa13.57□□□□□ -0.24
COL7A1-201ENST00000328333 MRPL3P09001 348 aaKnown RBP13.57□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 53.3 ms