RNA–Protein interactions for RNA: ENST00000323701.10

USP39-201, Transcript of ubiquitin specific peptidase 39, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP39, Length 2,177 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-201ENST00000323701 TFAP2AP05549 437 aa17.11■□□□□ 0.33
USP39-201ENST00000323701 IL7RP16871 459 aa17.11■□□□□ 0.33
USP39-201ENST00000323701 FBLP22087 321 aaKnown RBP17.11■□□□□ 0.33
USP39-201ENST00000323701 ELAVL4P26378 380 aaKnown RBP17.11■□□□□ 0.33
USP39-201ENST00000323701 RFX3P48380 749 aa17.11■□□□□ 0.33
USP39-201ENST00000323701 PLAURQ03405 335 aa17.11■□□□□ 0.33
USP39-201ENST00000323701 MEP1AQ16819 746 aa17.11■□□□□ 0.33
USP39-201ENST00000323701 FGD3Q5JSP0 725 aa17.11■□□□□ 0.33
USP39-201ENST00000323701 COLEC12Q5KU26 742 aa17.11■□□□□ 0.33
USP39-201ENST00000323701 TTC23Q5W5X9 447 aa17.11■□□□□ 0.33
USP39-201ENST00000323701 PWWP2BQ6NUJ5 590 aa17.11■□□□□ 0.33
USP39-201ENST00000323701 ZNF836Q6ZNA1 936 aa17.11■□□□□ 0.33
USP39-201ENST00000323701 SHISA6Q6ZSJ9 500 aa17.11■□□□□ 0.33
USP39-201ENST00000323701 COX15Q7KZN9 410 aa17.11■□□□□ 0.33
USP39-201ENST00000323701 RABEPKQ7Z6M1 372 aa17.11■□□□□ 0.33
USP39-201ENST00000323701 GALNT15Q8N3T1 639 aa17.11■□□□□ 0.33
USP39-201ENST00000323701 C16orf52Q8NHV5 167 aa17.11■□□□□ 0.33
USP39-201ENST00000323701 SLC7A13Q8TCU3 470 aa17.11■□□□□ 0.33
USP39-201ENST00000323701 FUZQ9BT04 418 aa17.11■□□□□ 0.33
USP39-201ENST00000323701 PNO1Q9NRX1 252 aaKnown RBP17.11■□□□□ 0.33
USP39-201ENST00000323701 ZNF443Q9Y2A4 671 aaPredicted RBP17.11■□□□□ 0.33
USP39-201ENST00000323701 FAM86C2PA6NEL3 165 aa17.1■□□□□ 0.33
USP39-201ENST00000323701 AGAP5A6NIR3 686 aa17.1■□□□□ 0.33
USP39-201ENST00000323701 KCNK2O95069 426 aa17.1■□□□□ 0.33
USP39-201ENST00000323701 GASTP01350 101 aa17.1■□□□□ 0.33
USP39-201ENST00000323701 SYPP08247 313 aa17.1■□□□□ 0.33
USP39-201ENST00000323701 IFI6P09912 130 aa17.1■□□□□ 0.33
USP39-201ENST00000323701 ITGAMP11215 1152 aa17.1■□□□□ 0.33
USP39-201ENST00000323701 TRHRP34981 398 aaPredicted RBP17.1■□□□□ 0.33
USP39-201ENST00000323701 ISL1P61371 349 aa17.1■□□□□ 0.33
USP39-201ENST00000323701 RHAGQ02094 409 aa17.1■□□□□ 0.33
USP39-201ENST00000323701 CD47Q08722 323 aa17.1■□□□□ 0.33
USP39-201ENST00000323701 FUT7Q11130 342 aa17.1■□□□□ 0.33
USP39-201ENST00000323701 RFX4Q33E94 735 aa17.1■□□□□ 0.33
USP39-201ENST00000323701 ZCCHC12Q6PEW1 402 aa17.1■□□□□ 0.33
USP39-201ENST00000323701 SLITRK4Q8IW52 837 aa17.1■□□□□ 0.33
USP39-201ENST00000323701 NLGN4XQ8N0W4 816 aa17.1■□□□□ 0.33
USP39-201ENST00000323701 ZNF615Q8N8J6 731 aa17.1■□□□□ 0.33
USP39-201ENST00000323701 ZNF555Q8NEP9 628 aa17.1■□□□□ 0.33
USP39-201ENST00000323701 RNF217Q8TC41 542 aa17.1■□□□□ 0.33
USP39-201ENST00000323701 SGCDQ92629 289 aa17.1■□□□□ 0.33
USP39-201ENST00000323701 UBE2FQ969M7 185 aa17.1■□□□□ 0.33
USP39-201ENST00000323701 GTPBP3Q969Y2 492 aaKnown RBP17.1■□□□□ 0.33
USP39-201ENST00000323701 ARHGDIGQ99819 225 aa17.1■□□□□ 0.33
USP39-201ENST00000323701 OCIAD1Q9NX40 245 aa17.1■□□□□ 0.33
USP39-201ENST00000323701 SATB2Q9UPW6 733 aa17.1■□□□□ 0.33
USP39-201ENST00000323701 SLC9A8Q9Y2E8 581 aa17.1■□□□□ 0.33
USP39-201ENST00000323701 ORC6Q9Y5N6 252 aa17.1■□□□□ 0.33
USP39-201ENST00000323701 LNP1A1A4G5 178 aa17.09■□□□□ 0.33
USP39-201ENST00000323701 C17orf105B2RV13 164 aa17.09■□□□□ 0.33
USP39-201ENST00000323701 E9PQ18 207 aa17.09■□□□□ 0.33
USP39-201ENST00000323701 BCKDKO14874 412 aa17.09■□□□□ 0.33
USP39-201ENST00000323701 CT45A8P0DMV1 189 aa17.09■□□□□ 0.33
USP39-201ENST00000323701 CT45A9P0DMV2 189 aa17.09■□□□□ 0.33
USP39-201ENST00000323701 CT45A2Q5DJT8 189 aa17.09■□□□□ 0.33
USP39-201ENST00000323701 ARHGAP40Q5TG30 622 aa17.09■□□□□ 0.33
USP39-201ENST00000323701 ZNF691Q5VV52 312 aa17.09■□□□□ 0.33
USP39-201ENST00000323701 THAP5Q7Z6K1 395 aa17.09■□□□□ 0.33
USP39-201ENST00000323701 SATL1Q86VE3 508 aa17.09■□□□□ 0.33
USP39-201ENST00000323701 ZSCAN1Q8NBB4 408 aa17.09■□□□□ 0.33
USP39-201ENST00000323701 CLIP3Q96DZ5 547 aa17.09■□□□□ 0.33
USP39-201ENST00000323701 OR1F2PQ96R84 312 aa17.09■□□□□ 0.33
USP39-201ENST00000323701 LMF2Q9BU23 707 aaKnown RBP17.09■□□□□ 0.33
USP39-201ENST00000323701 SAP130Q9H0E3 1048 aa17.09■□□□□ 0.33
USP39-201ENST00000323701 OR10A5Q9H207 317 aa17.09■□□□□ 0.33
USP39-201ENST00000323701 SIDT1Q9NXL6 827 aaKnown RBP17.09■□□□□ 0.33
USP39-201ENST00000323701 FREM2Q5SZK8 3169 aa17.09■□□□□ 0.33
USP39-201ENST00000323701 KIAA0513O60268 411 aa17.09■□□□□ 0.33
USP39-201ENST00000323701 STX11O75558 287 aa17.09■□□□□ 0.33
USP39-201ENST00000323701 H1F0P07305 194 aaKnown RBP17.09■□□□□ 0.33
USP39-201ENST00000323701 AGXTP21549 392 aa17.09■□□□□ 0.33
USP39-201ENST00000323701 CBLP22681 906 aa17.09■□□□□ 0.33
USP39-201ENST00000323701 PRKAR1BP31321 381 aa17.09■□□□□ 0.33
USP39-201ENST00000323701 GSSP48637 474 aa17.09■□□□□ 0.33
USP39-201ENST00000323701 EEF1A1P68104 462 aaKnown RBP17.09■□□□□ 0.33
USP39-201ENST00000323701 POU6F2P78424 691 aaPredicted RBP17.09■□□□□ 0.33
USP39-201ENST00000323701 EPS8Q12929 822 aa17.09■□□□□ 0.33
USP39-201ENST00000323701 NPRL3Q12980 569 aa17.09■□□□□ 0.33
USP39-201ENST00000323701 PHF19Q5T6S3 580 aa17.09■□□□□ 0.33
USP39-201ENST00000323701 LAIR1Q6GTX8 287 aa17.09■□□□□ 0.33
USP39-201ENST00000323701 C8orf59Q8N0T1 100 aaPredicted RBP17.09■□□□□ 0.33
USP39-201ENST00000323701 AQP11Q8NBQ7 271 aa17.09■□□□□ 0.33
USP39-201ENST00000323701 TSPAN14Q8NG11 270 aa17.09■□□□□ 0.33
USP39-201ENST00000323701 LMF1Q96S06 567 aa17.09■□□□□ 0.33
USP39-201ENST00000323701 FANCEQ9HB96 536 aa17.09■□□□□ 0.33
USP39-201ENST00000323701 HCN4Q9Y3Q4 1203 aa17.09■□□□□ 0.33
USP39-201ENST00000323701 SYT5O00445 386 aa17.08■□□□□ 0.33
USP39-201ENST00000323701 BRINP1O60477 761 aa17.08■□□□□ 0.33
USP39-201ENST00000323701 COQ9O75208 318 aa17.08■□□□□ 0.33
USP39-201ENST00000323701 UGT2B17O75795 530 aa17.08■□□□□ 0.33
USP39-201ENST00000323701 OR6B1O95007 311 aa17.08■□□□□ 0.33
USP39-201ENST00000323701 CCNB2O95067 398 aa17.08■□□□□ 0.33
USP39-201ENST00000323701 PRG2P13727 222 aa17.08■□□□□ 0.33
USP39-201ENST00000323701 TNNI3P19429 210 aa17.08■□□□□ 0.33
USP39-201ENST00000323701 RPS4Y1P22090 263 aaKnown RBP17.08■□□□□ 0.33
USP39-201ENST00000323701 GSTT1P30711 240 aa17.08■□□□□ 0.33
USP39-201ENST00000323701 MAPK10P53779 464 aa17.08■□□□□ 0.33
USP39-201ENST00000323701 RHBDD2Q6NTF9 364 aa17.08■□□□□ 0.33
USP39-201ENST00000323701 DHRS4L2Q6PKH6 230 aa17.08■□□□□ 0.33
USP39-201ENST00000323701 MED25Q71SY5 747 aa17.08■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 40.2 ms