RNA–Protein interactions for RNA: ENST00000301897.5

CCDC88B-201, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 870 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-201ENST00000301897 ZC3HAV1LQ96H79 300 aaKnown RBP13.31□□□□□ -0.28
CCDC88B-201ENST00000301897 NSUN5Q96P11 429 aaKnown RBP13.31□□□□□ -0.28
CCDC88B-201ENST00000301897 PINK1Q9BXM7 581 aa13.31□□□□□ -0.28
CCDC88B-201ENST00000301897 DSN1Q9H410 356 aa13.31□□□□□ -0.28
CCDC88B-201ENST00000301897 FOLH1BQ9HBA9 442 aa13.31□□□□□ -0.28
CCDC88B-201ENST00000301897 HHATLQ9HCP6 504 aa13.31□□□□□ -0.28
CCDC88B-201ENST00000301897 ZNF701Q9NV72 531 aaPredicted RBP13.31□□□□□ -0.28
CCDC88B-201ENST00000301897 SENP1Q9P0U3 644 aa13.31□□□□□ -0.28
CCDC88B-201ENST00000301897 MCM8Q9UJA3 840 aa13.31□□□□□ -0.28
CCDC88B-201ENST00000301897 EMC9Q9Y3B6 208 aa13.31□□□□□ -0.28
CCDC88B-201ENST00000301897 COQ9O75208 318 aa13.3□□□□□ -0.28
CCDC88B-201ENST00000301897 SLITRK5O94991 958 aa13.3□□□□□ -0.28
CCDC88B-201ENST00000301897 RPS17P08708 135 aaKnown RBP13.3□□□□□ -0.28
CCDC88B-201ENST00000301897 COL6A2P12110 1019 aa13.3□□□□□ -0.28
CCDC88B-201ENST00000301897 TCEA1P23193 301 aaKnown RBP13.3□□□□□ -0.28
CCDC88B-201ENST00000301897 LOXP28300 417 aaPredicted RBP13.3□□□□□ -0.28
CCDC88B-201ENST00000301897 MPIP34949 423 aa13.3□□□□□ -0.28
CCDC88B-201ENST00000301897 CLK3P49761 638 aaKnown RBP13.3□□□□□ -0.28
CCDC88B-201ENST00000301897 HEPACAMQ14CZ8 416 aa13.3□□□□□ -0.28
CCDC88B-201ENST00000301897 GUSBP1Q15486 140 aa13.3□□□□□ -0.28
CCDC88B-201ENST00000301897 CYP27C1Q4G0S4 372 aa13.3□□□□□ -0.28
CCDC88B-201ENST00000301897 SH2D5Q6ZV89 423 aa13.3□□□□□ -0.28
CCDC88B-201ENST00000301897 ZNF610Q8N9Z0 462 aa13.3□□□□□ -0.28
CCDC88B-201ENST00000301897 OR2M3Q8NG83 312 aa13.3□□□□□ -0.28
CCDC88B-201ENST00000301897 FNDC9Q8TBE3 224 aa13.3□□□□□ -0.28
CCDC88B-201ENST00000301897 IGFBPL1Q8WX77 278 aa13.3□□□□□ -0.28
CCDC88B-201ENST00000301897 KAT2AQ92830 837 aa13.3□□□□□ -0.28
CCDC88B-201ENST00000301897 MTBPQ96DY7 904 aa13.3□□□□□ -0.28
CCDC88B-201ENST00000301897 MRRFQ96E11 262 aaKnown RBP13.3□□□□□ -0.28
CCDC88B-201ENST00000301897 HS3ST6Q96QI5 342 aa13.3□□□□□ -0.28
CCDC88B-201ENST00000301897 KLHL4Q9C0H6 718 aa13.3□□□□□ -0.28
CCDC88B-201ENST00000301897 FARSBQ9NSD9 589 aaKnown RBP13.3□□□□□ -0.28
CCDC88B-201ENST00000301897 MRTO4Q9UKD2 239 aaKnown RBP13.3□□□□□ -0.28
CCDC88B-201ENST00000301897 ZNF337Q9Y3M9 751 aa13.3□□□□□ -0.28
CCDC88B-201ENST00000301897 AP4B1Q9Y6B7 739 aa13.3□□□□□ -0.28
CCDC88B-201ENST00000301897 ABCA1O95477 2261 aa13.3□□□□□ -0.28
CCDC88B-201ENST00000301897 SEC14L5O43304 696 aa13.29□□□□□ -0.28
CCDC88B-201ENST00000301897 CRLF1O75462 422 aa13.29□□□□□ -0.28
CCDC88B-201ENST00000301897 KRT6AP02538 564 aa13.29□□□□□ -0.28
CCDC88B-201ENST00000301897 KRT6BP04259 564 aa13.29□□□□□ -0.28
CCDC88B-201ENST00000301897 GSTM5P46439 218 aa13.29□□□□□ -0.28
CCDC88B-201ENST00000301897 KRT6CP48668 564 aa13.29□□□□□ -0.28
CCDC88B-201ENST00000301897 ATP5J2P56134 94 aa13.29□□□□□ -0.28
CCDC88B-201ENST00000301897 CSTF3Q12996 717 aaKnown RBP13.29□□□□□ -0.28
CCDC88B-201ENST00000301897 PON3Q15166 354 aa13.29□□□□□ -0.28
CCDC88B-201ENST00000301897 ETFDHQ16134 617 aa13.29□□□□□ -0.28
CCDC88B-201ENST00000301897 LETMD1Q6P1Q0 360 aa13.29□□□□□ -0.28
CCDC88B-201ENST00000301897 ZDHHC24Q6UX98 284 aa13.29□□□□□ -0.28
CCDC88B-201ENST00000301897 NPSR1Q6W5P4 371 aa13.29□□□□□ -0.28
CCDC88B-201ENST00000301897 FAM9CQ8IZT9 166 aa13.29□□□□□ -0.28
CCDC88B-201ENST00000301897 METTL25Q8N6Q8 603 aa13.29□□□□□ -0.28
CCDC88B-201ENST00000301897 OR9A2Q8NGT5 310 aa13.29□□□□□ -0.28
CCDC88B-201ENST00000301897 OR6K3Q8NGY3 331 aa13.29□□□□□ -0.28
CCDC88B-201ENST00000301897 ZNF483Q8TF39 744 aaPredicted RBP13.29□□□□□ -0.28
CCDC88B-201ENST00000301897 EFHD2Q96C19 240 aaPredicted RBP13.29□□□□□ -0.28
CCDC88B-201ENST00000301897 MRPL57Q9BQC6 102 aaKnown RBP13.29□□□□□ -0.28
CCDC88B-201ENST00000301897 C1QTNF3Q9BXJ4 246 aa13.29□□□□□ -0.28
CCDC88B-201ENST00000301897 SLC35C2Q9NQQ7 365 aa13.29□□□□□ -0.28
CCDC88B-201ENST00000301897 FAM120CQ9NX05 1096 aaKnown RBP13.29□□□□□ -0.28
CCDC88B-201ENST00000301897 PAQR5Q9NXK6 330 aaPredicted RBP13.29□□□□□ -0.28
CCDC88B-201ENST00000301897 XPR1Q9UBH6 696 aa13.29□□□□□ -0.28
CCDC88B-201ENST00000301897 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP13.28□□□□□ -0.28
CCDC88B-201ENST00000301897 GNG14A0A1W2PPG7 69 aa13.28□□□□□ -0.28
CCDC88B-201ENST00000301897 OR2M5A3KFT3 312 aa13.28□□□□□ -0.28
CCDC88B-201ENST00000301897 HS3ST1O14792 307 aa13.28□□□□□ -0.28
CCDC88B-201ENST00000301897 SCO2O43819 266 aa13.28□□□□□ -0.28
CCDC88B-201ENST00000301897 IL3P08700 152 aa13.28□□□□□ -0.28
CCDC88B-201ENST00000301897 PSMD4P55036 377 aaKnown RBP13.28□□□□□ -0.28
CCDC88B-201ENST00000301897 CLDN15P56746 228 aa13.28□□□□□ -0.28
CCDC88B-201ENST00000301897 C2orf54Q08AI8 447 aa13.28□□□□□ -0.28
CCDC88B-201ENST00000301897 ZNF155Q12901 538 aaPredicted RBP13.28□□□□□ -0.28
CCDC88B-201ENST00000301897 RASA2Q15283 850 aa13.28□□□□□ -0.28
CCDC88B-201ENST00000301897 TRADDQ15628 312 aa13.28□□□□□ -0.28
CCDC88B-201ENST00000301897 SGCBQ16585 318 aa13.28□□□□□ -0.28
CCDC88B-201ENST00000301897 DECR1Q16698 335 aa13.28□□□□□ -0.28
CCDC88B-201ENST00000301897 SPIN4Q56A73 249 aa13.28□□□□□ -0.28
CCDC88B-201ENST00000301897 FAM180BQ6P0A1 224 aa13.28□□□□□ -0.28
CCDC88B-201ENST00000301897 ZNF704Q6ZNC4 412 aaPredicted RBP13.28□□□□□ -0.28
CCDC88B-201ENST00000301897 PLD6Q8N2A8 252 aaKnown RBP13.28□□□□□ -0.28
CCDC88B-201ENST00000301897 ZNF611Q8N823 705 aa13.28□□□□□ -0.28
CCDC88B-201ENST00000301897 UHMK1Q8TAS1 419 aaKnown RBP13.28□□□□□ -0.28
CCDC88B-201ENST00000301897 EXOSC8Q96B26 276 aaKnown RBP13.28□□□□□ -0.28
CCDC88B-201ENST00000301897 C1GALT1C1Q96EU7 318 aa13.28□□□□□ -0.28
CCDC88B-201ENST00000301897 GMPPAQ96IJ6 420 aaPredicted RBP13.28□□□□□ -0.28
CCDC88B-201ENST00000301897 BBS4Q96RK4 519 aa13.28□□□□□ -0.28
CCDC88B-201ENST00000301897 PRRG4Q9BZD6 226 aa13.28□□□□□ -0.28
CCDC88B-201ENST00000301897 OR10A4Q9H209 315 aa13.28□□□□□ -0.28
CCDC88B-201ENST00000301897 MRPL46Q9H2W6 279 aaKnown RBP13.28□□□□□ -0.28
CCDC88B-201ENST00000301897 ACSS3Q9H6R3 686 aa13.28□□□□□ -0.28
CCDC88B-201ENST00000301897 PLSCR4Q9NRQ2 329 aa13.28□□□□□ -0.28
CCDC88B-201ENST00000301897 MED11Q9P086 117 aa13.28□□□□□ -0.28
CCDC88B-201ENST00000301897 A0A087WV62 115 aa13.27□□□□□ -0.29
CCDC88B-201ENST00000301897 B4DXG7 233 aa13.27□□□□□ -0.29
CCDC88B-201ENST00000301897 H3BML4 177 aa13.27□□□□□ -0.29
CCDC88B-201ENST00000301897 KLF4O43474 513 aa13.27□□□□□ -0.29
CCDC88B-201ENST00000301897 PCDH7O60245 1069 aa13.27□□□□□ -0.29
CCDC88B-201ENST00000301897 FADS1O60427 444 aa13.27□□□□□ -0.29
CCDC88B-201ENST00000301897 PLGP00747 810 aaPredicted RBP13.27□□□□□ -0.29
CCDC88B-201ENST00000301897 INHBAP08476 426 aa13.27□□□□□ -0.29
CCDC88B-201ENST00000301897 IL11P20809 199 aa13.27□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 34.6 ms