RNA–Protein interactions for RNA: ENST00000263274.11

LIG1-201, Transcript of DNA ligase 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIG1, Length 3,384 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-201ENST00000263274 TRAPPC4Q9Y296 219 aa11.88□□□□□ -0.51
LIG1-201ENST00000263274 IQCMA0A1B0GVH7 501 aa11.87□□□□□ -0.51
LIG1-201ENST00000263274 PIP5K1CO60331 668 aa11.87□□□□□ -0.51
LIG1-201ENST00000263274 FCMRO60667 390 aa11.87□□□□□ -0.51
LIG1-201ENST00000263274 LILRB5O75023 590 aa11.87□□□□□ -0.51
LIG1-201ENST00000263274 ACADMP11310 421 aa11.87□□□□□ -0.51
LIG1-201ENST00000263274 PTGS2P35354 604 aa11.87□□□□□ -0.51
LIG1-201ENST00000263274 FLYWCH1Q4VC44 716 aa11.87□□□□□ -0.51
LIG1-201ENST00000263274 MTFR2Q6P444 385 aa11.87□□□□□ -0.51
LIG1-201ENST00000263274 LILRA6Q6PI73 481 aa11.87□□□□□ -0.51
LIG1-201ENST00000263274 KLHDC8AQ8IYD2 350 aa11.87□□□□□ -0.51
LIG1-201ENST00000263274 NUP43Q8NFH3 380 aa11.87□□□□□ -0.51
LIG1-201ENST00000263274 BBS10Q8TAM1 723 aa11.87□□□□□ -0.51
LIG1-201ENST00000263274 SMG7Q92540 1137 aaKnown RBP11.87□□□□□ -0.51
LIG1-201ENST00000263274 PMEPA1Q969W9 287 aa11.87□□□□□ -0.51
LIG1-201ENST00000263274 GALNT9Q9HCQ5 603 aa11.87□□□□□ -0.51
LIG1-201ENST00000263274 MRPS30Q9NP92 439 aaKnown RBP11.87□□□□□ -0.51
LIG1-201ENST00000263274 TNFRSF10DQ9UBN6 386 aa11.87□□□□□ -0.51
LIG1-201ENST00000263274 HEATR5BQ9P2D3 2071 aa11.87□□□□□ -0.51
LIG1-201ENST00000263274 ALPK2Q86TB3 2170 aa11.87□□□□□ -0.51
LIG1-201ENST00000263274 ABHD14A-ACY1A0A1B0GW23 586 aa11.87□□□□□ -0.51
LIG1-201ENST00000263274 A0A1W2PRQ8 180 aa11.87□□□□□ -0.51
LIG1-201ENST00000263274 LYRM1O43325 122 aa11.87□□□□□ -0.51
LIG1-201ENST00000263274 CPEP16870 476 aa11.87□□□□□ -0.51
LIG1-201ENST00000263274 TRIM23P36406 574 aa11.87□□□□□ -0.51
LIG1-201ENST00000263274 TALDO1P37837 337 aa11.87□□□□□ -0.51
LIG1-201ENST00000263274 SLC1A3P43003 542 aa11.87□□□□□ -0.51
LIG1-201ENST00000263274 TOR1AIP1Q5JTV8 583 aa11.87□□□□□ -0.51
LIG1-201ENST00000263274 CCNJQ5T5M9 372 aa11.87□□□□□ -0.51
LIG1-201ENST00000263274 PXDC1Q5TGL8 231 aa11.87□□□□□ -0.51
LIG1-201ENST00000263274 PLBD1Q6P4A8 553 aa11.87□□□□□ -0.51
LIG1-201ENST00000263274 ZNF793Q6ZN11 406 aa11.87□□□□□ -0.51
LIG1-201ENST00000263274 ERN2Q76MJ5 926 aaKnown RBP11.87□□□□□ -0.51
LIG1-201ENST00000263274 SLC37A3Q8NCC5 494 aa11.87□□□□□ -0.51
LIG1-201ENST00000263274 LRIG1Q96JA1 1093 aa11.87□□□□□ -0.51
LIG1-201ENST00000263274 PRRC1Q96M27 445 aa11.87□□□□□ -0.51
LIG1-201ENST00000263274 SPTBP11277 2137 aa11.87□□□□□ -0.51
LIG1-201ENST00000263274 SLC9A3R1O14745 358 aaPredicted RBP11.87□□□□□ -0.51
LIG1-201ENST00000263274 SERPINI2O75830 405 aa11.87□□□□□ -0.51
LIG1-201ENST00000263274 SCO1O75880 301 aa11.87□□□□□ -0.51
LIG1-201ENST00000263274 HLA-DPB1P04440 258 aa11.87□□□□□ -0.51
LIG1-201ENST00000263274 CCL5P13501 91 aa11.87□□□□□ -0.51
LIG1-201ENST00000263274 CSNK2A2P19784 350 aaPredicted RBP11.87□□□□□ -0.51
LIG1-201ENST00000263274 GSTM3P21266 225 aa11.87□□□□□ -0.51
LIG1-201ENST00000263274 BTN3A2P78410 334 aa11.87□□□□□ -0.51
LIG1-201ENST00000263274 TRAM2Q15035 370 aa11.87□□□□□ -0.51
LIG1-201ENST00000263274 BHLHB9Q6PI77 547 aa11.87□□□□□ -0.51
LIG1-201ENST00000263274 KLHL36Q8N4N3 616 aa11.87□□□□□ -0.51
LIG1-201ENST00000263274 SNAPC3Q92966 411 aa11.87□□□□□ -0.51
LIG1-201ENST00000263274 WDR34Q96EX3 536 aa11.87□□□□□ -0.51
LIG1-201ENST00000263274 CCDC120Q96HB5 630 aa11.87□□□□□ -0.51
LIG1-201ENST00000263274 ZFP3Q96NJ6 502 aa11.87□□□□□ -0.51
LIG1-201ENST00000263274 ING3Q9NXR8 418 aa11.87□□□□□ -0.51
LIG1-201ENST00000263274 NPIPA5A0A0B4J1W7 369 aa11.86□□□□□ -0.51
LIG1-201ENST00000263274 ARRDC5A6NEK1 342 aa11.86□□□□□ -0.51
LIG1-201ENST00000263274 NPIPA7E9PJI5 369 aa11.86□□□□□ -0.51
LIG1-201ENST00000263274 INMT-MINDY4F8WBC2 141 aa11.86□□□□□ -0.51
LIG1-201ENST00000263274 GABRPO00591 440 aa11.86□□□□□ -0.51
LIG1-201ENST00000263274 UBXN7O94888 489 aa11.86□□□□□ -0.51
LIG1-201ENST00000263274 LIMS3P0CW19 117 aa11.86□□□□□ -0.51
LIG1-201ENST00000263274 LIMS4P0CW20 117 aa11.86□□□□□ -0.51
LIG1-201ENST00000263274 NPIPA8P0DM63 369 aa11.86□□□□□ -0.51
LIG1-201ENST00000263274 ATF4P18848 351 aaPredicted RBP11.86□□□□□ -0.51
LIG1-201ENST00000263274 GCGRP47871 477 aa11.86□□□□□ -0.51
LIG1-201ENST00000263274 PCBP4P57723 403 aaKnown RBP11.86□□□□□ -0.51
LIG1-201ENST00000263274 CSNK1G2P78368 415 aa11.86□□□□□ -0.51
LIG1-201ENST00000263274 DUSP2Q05923 314 aa11.86□□□□□ -0.51
LIG1-201ENST00000263274 ST3GAL3Q11203 375 aa11.86□□□□□ -0.51
LIG1-201ENST00000263274 RAB40BQ12829 278 aa11.86□□□□□ -0.51
LIG1-201ENST00000263274 ZNF234Q14588 700 aa11.86□□□□□ -0.51
LIG1-201ENST00000263274 NDUFA9Q16795 377 aa11.86□□□□□ -0.51
LIG1-201ENST00000263274 Q5BKY6 102 aa11.86□□□□□ -0.51
LIG1-201ENST00000263274 FAM27D1Q5T7N8 215 aa11.86□□□□□ -0.51
LIG1-201ENST00000263274 MZT2AQ6P582 158 aa11.86□□□□□ -0.51
LIG1-201ENST00000263274 CLDN22Q8N7P3 220 aa11.86□□□□□ -0.51
LIG1-201ENST00000263274 ACOT4Q8N9L9 421 aa11.86□□□□□ -0.51
LIG1-201ENST00000263274 GRPEL2Q8TAA5 225 aa11.86□□□□□ -0.51
LIG1-201ENST00000263274 GNPDA2Q8TDQ7 276 aa11.86□□□□□ -0.51
LIG1-201ENST00000263274 POF1BQ8WVV4 589 aa11.86□□□□□ -0.51
LIG1-201ENST00000263274 APOBEC4Q8WW27 367 aaKnown RBP11.86□□□□□ -0.51
LIG1-201ENST00000263274 LHX9Q9NQ69 397 aa11.86□□□□□ -0.51
LIG1-201ENST00000263274 NKIRAS2Q9NYR9 191 aa11.86□□□□□ -0.51
LIG1-201ENST00000263274 ZNF780BQ9Y6R6 833 aa11.86□□□□□ -0.51
LIG1-201ENST00000263274 A0A1W2PR48 441 aa11.86□□□□□ -0.51
LIG1-201ENST00000263274 ZNF860A6NHJ4 632 aa11.86□□□□□ -0.51
LIG1-201ENST00000263274 AKAP8O43823 692 aaKnown RBP11.86□□□□□ -0.51
LIG1-201ENST00000263274 MOSPD3O75425 235 aa11.86□□□□□ -0.51
LIG1-201ENST00000263274 LGI1O95970 557 aa11.86□□□□□ -0.51
LIG1-201ENST00000263274 ADH1CP00326 375 aa11.86□□□□□ -0.51
LIG1-201ENST00000263274 GKN3PP0CG01 181 aa11.86□□□□□ -0.51
LIG1-201ENST00000263274 FOSL1P15407 271 aa11.86□□□□□ -0.51
LIG1-201ENST00000263274 ACVR1BP36896 505 aa11.86□□□□□ -0.51
LIG1-201ENST00000263274 LIMK1P53667 647 aa11.86□□□□□ -0.51
LIG1-201ENST00000263274 PPP3R1P63098 170 aa11.86□□□□□ -0.51
LIG1-201ENST00000263274 PRR5P85299 388 aa11.86□□□□□ -0.51
LIG1-201ENST00000263274 ASAH1Q13510 395 aa11.86□□□□□ -0.51
LIG1-201ENST00000263274 ZNF77Q15935 545 aa11.86□□□□□ -0.51
LIG1-201ENST00000263274 FBXO15Q8NCQ5 510 aaPredicted RBP11.86□□□□□ -0.51
LIG1-201ENST00000263274 OR5K2Q8NHB8 316 aa11.86□□□□□ -0.51
LIG1-201ENST00000263274 SUN3Q8TAQ9 357 aa11.86□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 47.4 ms