RNA–Protein interactions for RNA: ENST00000641939.1

PHGDH-231, Transcript of phosphoglycerate dehydrogenase, human

Gene PHGDH, Length 540 nt, Biotype processed transcript, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PHGDH-231	ENST00000641939	TRAPPC6A	O75865	159 aa		13.74	□□□□□ -0.21
PHGDH-231	ENST00000641939	ENDOU	P21128	410 aa	Known RBP	13.74	□□□□□ -0.21
PHGDH-231	ENST00000641939	GPC1	P35052	558 aa		13.74	□□□□□ -0.21
PHGDH-231	ENST00000641939	PTGDS	P41222	190 aa		13.74	□□□□□ -0.21
PHGDH-231	ENST00000641939	TRPC1	P48995	793 aa		13.74	□□□□□ -0.21
PHGDH-231	ENST00000641939	CDK9	P50750	372 aa	Known RBP	13.74	□□□□□ -0.21
PHGDH-231	ENST00000641939	PNLIPRP2	P54317	469 aa		13.74	□□□□□ -0.21
PHGDH-231	ENST00000641939	MRPS22	P82650	360 aa	Known RBP	13.74	□□□□□ -0.21
PHGDH-231	ENST00000641939	STX3	Q13277	289 aa		13.74	□□□□□ -0.21
PHGDH-231	ENST00000641939	PDCD2	Q16342	344 aa	Predicted RBP	13.74	□□□□□ -0.21
PHGDH-231	ENST00000641939	CYP27C1	Q4G0S4	372 aa		13.74	□□□□□ -0.21
PHGDH-231	ENST00000641939	WLS	Q5T9L3	541 aa		13.74	□□□□□ -0.21
PHGDH-231	ENST00000641939	IL23R	Q5VWK5	629 aa		13.74	□□□□□ -0.21
PHGDH-231	ENST00000641939	ZNF787	Q6DD87	383 aa		13.74	□□□□□ -0.21
PHGDH-231	ENST00000641939	KIRREL3	Q8IZU9	778 aa		13.74	□□□□□ -0.21
PHGDH-231	ENST00000641939	MARVELD2	Q8N4S9	558 aa		13.74	□□□□□ -0.21
PHGDH-231	ENST00000641939	ANKRD42	Q8N9B4	389 aa		13.74	□□□□□ -0.21
PHGDH-231	ENST00000641939	OR4N2	Q8NGD1	307 aa		13.74	□□□□□ -0.21
PHGDH-231	ENST00000641939	NEIL3	Q8TAT5	605 aa		13.74	□□□□□ -0.21
PHGDH-231	ENST00000641939	EFHD2	Q96C19	240 aa	Predicted RBP	13.74	□□□□□ -0.21
PHGDH-231	ENST00000641939	GALNT9	Q9HCQ5	603 aa		13.74	□□□□□ -0.21
PHGDH-231	ENST00000641939	SPRR3	Q9UBC9	169 aa		13.74	□□□□□ -0.21
PHGDH-231	ENST00000641939	ATP6V1H	Q9UI12	483 aa		13.74	□□□□□ -0.21
PHGDH-231	ENST00000641939	PCNX3	Q9H6A9	2034 aa		13.74	□□□□□ -0.21
PHGDH-231	ENST00000641939	ABCA12	Q86UK0	2595 aa		13.73	□□□□□ -0.21
PHGDH-231	ENST00000641939	TMEM120B	A0PK00	339 aa		13.73	□□□□□ -0.21
PHGDH-231	ENST00000641939	C2orf72	A6NCS6	295 aa		13.73	□□□□□ -0.21
PHGDH-231	ENST00000641939	TTC36	A6NLP5	189 aa		13.73	□□□□□ -0.21
PHGDH-231	ENST00000641939	CLDN14	O95500	239 aa		13.73	□□□□□ -0.21
PHGDH-231	ENST00000641939	HPN	P05981	417 aa		13.73	□□□□□ -0.21
PHGDH-231	ENST00000641939	ACVR2A	P27037	513 aa		13.73	□□□□□ -0.21
PHGDH-231	ENST00000641939	HTR1E	P28566	365 aa		13.73	□□□□□ -0.21
PHGDH-231	ENST00000641939	PTPN6	P29350	595 aa		13.73	□□□□□ -0.21
PHGDH-231	ENST00000641939	RPL14	P50914	215 aa	Known RBP	13.73	□□□□□ -0.21
PHGDH-231	ENST00000641939	MAD2L1	Q13257	205 aa	Predicted RBP	13.73	□□□□□ -0.21
PHGDH-231	ENST00000641939	PTGR1	Q14914	329 aa		13.73	□□□□□ -0.21
PHGDH-231	ENST00000641939	ZNF585A	Q6P3V2	769 aa		13.73	□□□□□ -0.21
PHGDH-231	ENST00000641939	WDR53	Q7Z5U6	358 aa	Predicted RBP	13.73	□□□□□ -0.21
PHGDH-231	ENST00000641939	OR7A2P	Q8NGA2	310 aa		13.73	□□□□□ -0.21
PHGDH-231	ENST00000641939	CEP70	Q8NHQ1	597 aa		13.73	□□□□□ -0.21
PHGDH-231	ENST00000641939	SORT1	Q99523	831 aa		13.73	□□□□□ -0.21
PHGDH-231	ENST00000641939	LMF2	Q9BU23	707 aa	Known RBP	13.73	□□□□□ -0.21
PHGDH-231	ENST00000641939	TMBIM4	Q9HC24	238 aa		13.73	□□□□□ -0.21
PHGDH-231	ENST00000641939		Q9N2J8	555 aa		13.73	□□□□□ -0.21
PHGDH-231	ENST00000641939	COQ3	Q9NZJ6	369 aa		13.73	□□□□□ -0.21
PHGDH-231	ENST00000641939	NTM	Q9P121	344 aa		13.73	□□□□□ -0.21
PHGDH-231	ENST00000641939	HAO1	Q9UJM8	370 aa		13.73	□□□□□ -0.21
PHGDH-231	ENST00000641939	CBLC	Q9ULV8	474 aa		13.73	□□□□□ -0.21
PHGDH-231	ENST00000641939	EIF3L	Q9Y262	564 aa	Known RBP	13.73	□□□□□ -0.21
PHGDH-231	ENST00000641939	TEX15	Q9BXT5	2789 aa		13.72	□□□□□ -0.21
PHGDH-231	ENST00000641939	C15orf38-AP3S2	A0A0A6YYH1	394 aa		13.72	□□□□□ -0.21
PHGDH-231	ENST00000641939	WDR1	O75083	606 aa		13.72	□□□□□ -0.21
PHGDH-231	ENST00000641939	CYP4B1	P13584	511 aa		13.72	□□□□□ -0.21
PHGDH-231	ENST00000641939	GRN	P28799	593 aa	Known RBP	13.72	□□□□□ -0.21
PHGDH-231	ENST00000641939	SLC18A1	P54219	525 aa		13.72	□□□□□ -0.21
PHGDH-231	ENST00000641939	WDR4	P57081	412 aa	Known RBP	13.72	□□□□□ -0.21
PHGDH-231	ENST00000641939	MAGOH	P61326	146 aa	Known RBP	13.72	□□□□□ -0.21
PHGDH-231	ENST00000641939	EMX2	Q04743	252 aa		13.72	□□□□□ -0.21
PHGDH-231	ENST00000641939	BST1	Q10588	318 aa		13.72	□□□□□ -0.21
PHGDH-231	ENST00000641939	PMPCA	Q10713	525 aa		13.72	□□□□□ -0.21
PHGDH-231	ENST00000641939	GAB1	Q13480	694 aa		13.72	□□□□□ -0.21
PHGDH-231	ENST00000641939	MLC1	Q15049	377 aa		13.72	□□□□□ -0.21
PHGDH-231	ENST00000641939	TOMM20	Q15388	145 aa		13.72	□□□□□ -0.21
PHGDH-231	ENST00000641939	CDSN	Q15517	529 aa		13.72	□□□□□ -0.21
PHGDH-231	ENST00000641939	DECR1	Q16698	335 aa		13.72	□□□□□ -0.21
PHGDH-231	ENST00000641939	ZNF630	Q2M218	657 aa	Predicted RBP	13.72	□□□□□ -0.21
PHGDH-231	ENST00000641939	SMU1	Q2TAY7	513 aa		13.72	□□□□□ -0.21
PHGDH-231	ENST00000641939	CPTP	Q5TA50	214 aa		13.72	□□□□□ -0.21
PHGDH-231	ENST00000641939	SP5	Q6BEB4	398 aa	Predicted RBP	13.72	□□□□□ -0.21
PHGDH-231	ENST00000641939	ACAD11	Q709F0	780 aa		13.72	□□□□□ -0.21
PHGDH-231	ENST00000641939	RPRML	Q8N4K4	120 aa		13.72	□□□□□ -0.21
PHGDH-231	ENST00000641939	NUP43	Q8NFH3	380 aa		13.72	□□□□□ -0.21
PHGDH-231	ENST00000641939	RNF138	Q8WVD3	245 aa		13.72	□□□□□ -0.21
PHGDH-231	ENST00000641939	RND1	Q92730	232 aa		13.72	□□□□□ -0.21
PHGDH-231	ENST00000641939	SDCCAG3	Q96C92	435 aa		13.72	□□□□□ -0.21
PHGDH-231	ENST00000641939	TLCD1	Q96CP7	247 aa		13.72	□□□□□ -0.21
PHGDH-231	ENST00000641939	PPP1R36	Q96LQ0	422 aa		13.72	□□□□□ -0.21
PHGDH-231	ENST00000641939	PRPF18	Q99633	342 aa	Known RBP	13.72	□□□□□ -0.21
PHGDH-231	ENST00000641939	AKTIP	Q9H8T0	292 aa		13.72	□□□□□ -0.21
PHGDH-231	ENST00000641939	C3orf14	Q9HBI5	128 aa		13.72	□□□□□ -0.21
PHGDH-231	ENST00000641939	CHST11	Q9NPF2	352 aa		13.72	□□□□□ -0.21
PHGDH-231	ENST00000641939	EQTN	Q9NQ60	294 aa		13.72	□□□□□ -0.21
PHGDH-231	ENST00000641939	ATAD3A	Q9NVI7	634 aa		13.72	□□□□□ -0.21
PHGDH-231	ENST00000641939	ASIC5	Q9NY37	505 aa		13.72	□□□□□ -0.21
PHGDH-231	ENST00000641939	NOP53	Q9NZM5	478 aa	Known RBP	13.72	□□□□□ -0.21
PHGDH-231	ENST00000641939	MRTO4	Q9UKD2	239 aa	Known RBP	13.72	□□□□□ -0.21
PHGDH-231	ENST00000641939	MAPRE3	Q9UPY8	281 aa		13.72	□□□□□ -0.21
PHGDH-231	ENST00000641939	PCDHGB3	Q9Y5G1	929 aa		13.72	□□□□□ -0.21
PHGDH-231	ENST00000641939	WIF1	Q9Y5W5	379 aa		13.72	□□□□□ -0.21
PHGDH-231	ENST00000641939	ADGRG4	Q8IZF6	3080 aa		13.72	□□□□□ -0.21
PHGDH-231	ENST00000641939	HCFC1	P51610	2035 aa		13.71	□□□□□ -0.21
PHGDH-231	ENST00000641939	EMC8	O43402	210 aa		13.71	□□□□□ -0.21
PHGDH-231	ENST00000641939	CBR3	O75828	277 aa		13.71	□□□□□ -0.21
PHGDH-231	ENST00000641939	HOXD4	P09016	255 aa	Predicted RBP	13.71	□□□□□ -0.21
PHGDH-231	ENST00000641939	LAMP1	P11279	417 aa		13.71	□□□□□ -0.21
PHGDH-231	ENST00000641939	G6PD	P11413	515 aa		13.71	□□□□□ -0.21
PHGDH-231	ENST00000641939	GABRA1	P14867	456 aa		13.71	□□□□□ -0.21
PHGDH-231	ENST00000641939	EFNA1	P20827	205 aa	Predicted RBP	13.71	□□□□□ -0.21
PHGDH-231	ENST00000641939	PRPS1L1	P21108	318 aa		13.71	□□□□□ -0.21
PHGDH-231	ENST00000641939	GABRA3	P34903	492 aa		13.71	□□□□□ -0.21

Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms