RNA–Protein interactions for RNA: ENST00000639002.1

CD44-239, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best) BASIC

Gene CD44, Length 528 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-239ENST00000639002 ZMAT2Q96NC0 199 aaKnown RBP2.29□□□□□ -2.04
CD44-239ENST00000639002 NICN1Q9BSH3 213 aa2.29□□□□□ -2.04
CD44-239ENST00000639002 PTGES2Q9H7Z7 377 aa2.29□□□□□ -2.04
CD44-239ENST00000639002 MBD2Q9UBB5 411 aa2.29□□□□□ -2.04
CD44-239ENST00000639002 ONECUT1Q9UBC0 465 aa2.29□□□□□ -2.04
CD44-239ENST00000639002 TRMT6Q9UJA5 497 aaKnown RBP2.29□□□□□ -2.04
CD44-239ENST00000639002 ZNF175Q9Y473 711 aa2.29□□□□□ -2.04
CD44-239ENST00000639002 KIF26AQ9ULI4 1882 aaPredicted RBP2.28□□□□□ -2.04
CD44-239ENST00000639002 ANKRD30BQ9BXX2 1392 aa2.28□□□□□ -2.04
CD44-239ENST00000639002 TRBV7-9A0A0J9YWB2 115 aa2.28□□□□□ -2.04
CD44-239ENST00000639002 PSMA7O14818 248 aa2.28□□□□□ -2.04
CD44-239ENST00000639002 ZNF324O75467 553 aaPredicted RBP2.28□□□□□ -2.04
CD44-239ENST00000639002 LYPLA1O75608 230 aaPredicted RBP2.28□□□□□ -2.04
CD44-239ENST00000639002 SERPINF2P08697 491 aa2.28□□□□□ -2.04
CD44-239ENST00000639002 SDC1P18827 310 aa2.28□□□□□ -2.04
CD44-239ENST00000639002 GABRR1P24046 479 aa2.28□□□□□ -2.04
CD44-239ENST00000639002 RPS10P46783 165 aaKnown RBP2.28□□□□□ -2.04
CD44-239ENST00000639002 SGSHP51688 502 aa2.28□□□□□ -2.04
CD44-239ENST00000639002 SMSP52788 366 aa2.28□□□□□ -2.04
CD44-239ENST00000639002 TYSND1Q2T9J0 566 aa2.28□□□□□ -2.04
CD44-239ENST00000639002 MEDAGQ5VYS4 303 aa2.28□□□□□ -2.04
CD44-239ENST00000639002 CYB5R2Q6BCY4 276 aa2.28□□□□□ -2.04
CD44-239ENST00000639002 FRA10AC1Q70Z53 315 aa2.28□□□□□ -2.04
CD44-239ENST00000639002 PRSS42Q7Z5A4 293 aa2.28□□□□□ -2.04
CD44-239ENST00000639002 FAM9BQ8IZU0 186 aa2.28□□□□□ -2.04
CD44-239ENST00000639002 ARNTL2Q8WYA1 636 aa2.28□□□□□ -2.04
CD44-239ENST00000639002 HAVCR1Q96D42 359 aa2.28□□□□□ -2.04
CD44-239ENST00000639002 CACNG6Q9BXT2 260 aa2.28□□□□□ -2.04
CD44-239ENST00000639002 NLNQ9BYT8 704 aa2.28□□□□□ -2.04
CD44-239ENST00000639002 NXF3Q9H4D5 531 aaKnown RBP2.28□□□□□ -2.04
CD44-239ENST00000639002 ELOVL2Q9NXB9 296 aa2.28□□□□□ -2.04
CD44-239ENST00000639002 ERVK-18Q9QC07 812 aa2.28□□□□□ -2.04
CD44-239ENST00000639002 LHX3Q9UBR4 397 aa2.28□□□□□ -2.04
CD44-239ENST00000639002 MRPS2Q9Y399 296 aaKnown RBP2.28□□□□□ -2.04
CD44-239ENST00000639002 PPIAL4AQ9Y536 164 aa2.28□□□□□ -2.04
CD44-239ENST00000639002 WSB1Q9Y6I7 421 aa2.28□□□□□ -2.04
CD44-239ENST00000639002 KMT2BQ9UMN6 2715 aaPredicted RBP2.28□□□□□ -2.04
CD44-239ENST00000639002 NPC1L1Q9UHC9 1359 aa2.27□□□□□ -2.05
CD44-239ENST00000639002 GAKO14976 1311 aa2.27□□□□□ -2.05
CD44-239ENST00000639002 A0A1W2PQ67 120 aa2.27□□□□□ -2.05
CD44-239ENST00000639002 TRAF3IP2O43734 574 aaPredicted RBP2.27□□□□□ -2.05
CD44-239ENST00000639002 SFTPBP07988 381 aa2.27□□□□□ -2.05
CD44-239ENST00000639002 PMELP40967 661 aa2.27□□□□□ -2.05
CD44-239ENST00000639002 SNU13P55769 128 aaKnown RBP2.27□□□□□ -2.05
CD44-239ENST00000639002 ARIH2OSQ8N7S6 290 aa2.27□□□□□ -2.05
CD44-239ENST00000639002 MARCH1Q8TCQ1 289 aa2.27□□□□□ -2.05
CD44-239ENST00000639002 CNPY3Q9BT09 278 aa2.27□□□□□ -2.05
CD44-239ENST00000639002 L3MBTL1Q9Y468 752 aa2.27□□□□□ -2.05
CD44-239ENST00000639002 THSD7BQ9C0I4 1608 aa2.27□□□□□ -2.05
CD44-239ENST00000639002 PKD1L2Q7Z442 2459 aa2.27□□□□□ -2.05
CD44-239ENST00000639002 HIVEP2P31629 2446 aa2.27□□□□□ -2.05
CD44-239ENST00000639002 RAD54L2Q9Y4B4 1467 aa2.26□□□□□ -2.05
CD44-239ENST00000639002 ASTN1O14525 1302 aa2.26□□□□□ -2.05
CD44-239ENST00000639002 LRIT2A6NDA9 550 aa2.26□□□□□ -2.05
CD44-239ENST00000639002 CCER2I3L3R5 266 aa2.26□□□□□ -2.05
CD44-239ENST00000639002 SLC28A1O00337 649 aa2.26□□□□□ -2.05
CD44-239ENST00000639002 CHEK1O14757 476 aa2.26□□□□□ -2.05
CD44-239ENST00000639002 SUPT7LO94864 414 aa2.26□□□□□ -2.05
CD44-239ENST00000639002 TOXO94900 526 aa2.26□□□□□ -2.05
CD44-239ENST00000639002 NF2P35240 595 aa2.26□□□□□ -2.05
CD44-239ENST00000639002 CTRLP40313 264 aa2.26□□□□□ -2.05
CD44-239ENST00000639002 NPY2RP49146 381 aa2.26□□□□□ -2.05
CD44-239ENST00000639002 OTUD4Q01804 1114 aaKnown RBP2.26□□□□□ -2.05
CD44-239ENST00000639002 TEFQ10587 303 aa2.26□□□□□ -2.05
CD44-239ENST00000639002 BNIP1Q12981 228 aa2.26□□□□□ -2.05
CD44-239ENST00000639002 EIF4EBP1Q13541 118 aaPredicted RBP2.26□□□□□ -2.05
CD44-239ENST00000639002 EIF2B1Q14232 305 aaKnown RBP2.26□□□□□ -2.05
CD44-239ENST00000639002 GPNMBQ14956 572 aa2.26□□□□□ -2.05
CD44-239ENST00000639002 ZNF699Q32M78 642 aa2.26□□□□□ -2.05
CD44-239ENST00000639002 NKAIN2Q5VXU1 208 aa2.26□□□□□ -2.05
CD44-239ENST00000639002 SYCP3Q8IZU3 236 aa2.26□□□□□ -2.05
CD44-239ENST00000639002 OR8H3Q8N146 312 aa2.26□□□□□ -2.05
CD44-239ENST00000639002 FIBINQ8TAL6 211 aa2.26□□□□□ -2.05
CD44-239ENST00000639002 RNASE8Q8TDE3 154 aaKnown RBP2.26□□□□□ -2.05
CD44-239ENST00000639002 C7orf33Q8WU49 177 aa2.26□□□□□ -2.05
CD44-239ENST00000639002 MYDGFQ969H8 173 aa2.26□□□□□ -2.05
CD44-239ENST00000639002 NRTNQ99748 197 aa2.26□□□□□ -2.05
CD44-239ENST00000639002 OSBPL8Q9BZF1 889 aa2.26□□□□□ -2.05
CD44-239ENST00000639002 GLT8D2Q9H1C3 349 aa2.26□□□□□ -2.05
CD44-239ENST00000639002 ABCG8Q9H221 673 aa2.26□□□□□ -2.05
CD44-239ENST00000639002 ZWILCHQ9H900 591 aa2.26□□□□□ -2.05
CD44-239ENST00000639002 GRPEL1Q9HAV7 217 aa2.26□□□□□ -2.05
CD44-239ENST00000639002 CACNG2Q9Y698 323 aa2.26□□□□□ -2.05
CD44-239ENST00000639002 CACNA1AO00555 2505 aa2.26□□□□□ -2.05
CD44-239ENST00000639002 PARD3Q8TEW0 1356 aa2.25□□□□□ -2.05
CD44-239ENST00000639002 IGKV2-28A0A075B6P5 120 aa2.25□□□□□ -2.05
CD44-239ENST00000639002 NPIPA2E9PIF3 369 aa2.25□□□□□ -2.05
CD44-239ENST00000639002 K7ENP7 123 aa2.25□□□□□ -2.05
CD44-239ENST00000639002 ABCD4O14678 606 aa2.25□□□□□ -2.05
CD44-239ENST00000639002 IGKV2D-28P01615 120 aa2.25□□□□□ -2.05
CD44-239ENST00000639002 PGK2P07205 417 aa2.25□□□□□ -2.05
CD44-239ENST00000639002 STK19P49842 368 aaPredicted RBP2.25□□□□□ -2.05
CD44-239ENST00000639002 PFN3P60673 137 aa2.25□□□□□ -2.05
CD44-239ENST00000639002 UBXN1Q04323 297 aa2.25□□□□□ -2.05
CD44-239ENST00000639002 DPYSQ14117 519 aa2.25□□□□□ -2.05
CD44-239ENST00000639002 KCNJ11Q14654 390 aa2.25□□□□□ -2.05
CD44-239ENST00000639002 HIST2H2AA3Q6FI13 130 aa2.25□□□□□ -2.05
CD44-239ENST00000639002 SULT1C3Q6IMI6 304 aa2.25□□□□□ -2.05
CD44-239ENST00000639002 KCTD9Q7L273 389 aa2.25□□□□□ -2.05
CD44-239ENST00000639002 GALNTL5Q7Z4T8 443 aa2.25□□□□□ -2.05
Retrieved 100 of 20,778 RNA–protein pairs in 46.6 ms