RNA–Protein interactions for RNA: ENST00000637551.2

CLN3-259, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,083 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-259ENST00000637551 ZNF407Q9C0G0 2248 aa16.78■□□□□ 0.28
CLN3-259ENST00000637551 OR14I1A6ND48 311 aa16.77■□□□□ 0.28
CLN3-259ENST00000637551 POLR3GO15318 223 aaPredicted RBP16.77■□□□□ 0.28
CLN3-259ENST00000637551 SCN2BO60939 215 aa16.77■□□□□ 0.28
CLN3-259ENST00000637551 KCNH1O95259 989 aa16.77■□□□□ 0.28
CLN3-259ENST00000637551 IL6P05231 212 aa16.77■□□□□ 0.28
CLN3-259ENST00000637551 KITP10721 976 aa16.77■□□□□ 0.28
CLN3-259ENST00000637551 MST1P26927 711 aa16.77■□□□□ 0.28
CLN3-259ENST00000637551 IL12BP29460 328 aa16.77■□□□□ 0.28
CLN3-259ENST00000637551 CASP3P42574 277 aa16.77■□□□□ 0.28
CLN3-259ENST00000637551 CDK9P50750 372 aaKnown RBP16.77■□□□□ 0.28
CLN3-259ENST00000637551 CORO7P57737 925 aa16.77■□□□□ 0.28
CLN3-259ENST00000637551 FBXW4P57775 412 aa16.77■□□□□ 0.28
CLN3-259ENST00000637551 ARHGAP11AQ6P4F7 1023 aa16.77■□□□□ 0.28
CLN3-259ENST00000637551 GFRALQ6UXV0 394 aa16.77■□□□□ 0.28
CLN3-259ENST00000637551 SLC44A2Q8IWA5 706 aaPredicted RBP16.77■□□□□ 0.28
CLN3-259ENST00000637551 EID3Q8N140 333 aa16.77■□□□□ 0.28
CLN3-259ENST00000637551 NUP43Q8NFH3 380 aa16.77■□□□□ 0.28
CLN3-259ENST00000637551 PPP1R36Q96LQ0 422 aa16.77■□□□□ 0.28
CLN3-259ENST00000637551 DOHHQ9BU89 302 aa16.77■□□□□ 0.28
CLN3-259ENST00000637551 WDR55Q9H6Y2 383 aaPredicted RBP16.77■□□□□ 0.28
CLN3-259ENST00000637551 ZNF703Q9H7S9 590 aaPredicted RBP16.77■□□□□ 0.28
CLN3-259ENST00000637551 PROK2Q9HC23 129 aa16.77■□□□□ 0.28
CLN3-259ENST00000637551 ACKR4Q9NPB9 350 aa16.77■□□□□ 0.28
CLN3-259ENST00000637551 SLCO1B3Q9NPD5 702 aa16.77■□□□□ 0.28
CLN3-259ENST00000637551 TCF7L2Q9NQB0 619 aa16.77■□□□□ 0.28
CLN3-259ENST00000637551 CBLCQ9ULV8 474 aa16.77■□□□□ 0.28
CLN3-259ENST00000637551 ZNF835Q9Y2P0 537 aa16.77■□□□□ 0.28
CLN3-259ENST00000637551 ITPR2Q14571 2701 aa16.77■□□□□ 0.28
CLN3-259ENST00000637551 A0A1B0GUH1 482 aa16.76■□□□□ 0.27
CLN3-259ENST00000637551 A0A1B0GVC2 190 aa16.76■□□□□ 0.27
CLN3-259ENST00000637551 UBDO15205 165 aa16.76■□□□□ 0.27
CLN3-259ENST00000637551 HS6ST1O60243 411 aa16.76■□□□□ 0.27
CLN3-259ENST00000637551 SUSD5O60279 629 aa16.76■□□□□ 0.27
CLN3-259ENST00000637551 HCN1O60741 890 aa16.76■□□□□ 0.27
CLN3-259ENST00000637551 IL33O95760 270 aa16.76■□□□□ 0.27
CLN3-259ENST00000637551 GUSBP08236 651 aa16.76■□□□□ 0.27
CLN3-259ENST00000637551 GNLYP22749 145 aa16.76■□□□□ 0.27
CLN3-259ENST00000637551 PTGER1P34995 402 aa16.76■□□□□ 0.27
CLN3-259ENST00000637551 CCT3P49368 545 aaKnown RBP16.76■□□□□ 0.27
CLN3-259ENST00000637551 WNT3P56703 355 aa16.76■□□□□ 0.27
CLN3-259ENST00000637551 PMP22Q01453 160 aa16.76■□□□□ 0.27
CLN3-259ENST00000637551 CPEB4Q17RY0 729 aaKnown RBP eCLIP16.76■□□□□ 0.27
CLN3-259ENST00000637551 SLC9B1Q4ZJI4 515 aa16.76■□□□□ 0.27
CLN3-259ENST00000637551 TMEM198Q66K66 360 aa16.76■□□□□ 0.27
CLN3-259ENST00000637551 MTFR2Q6P444 385 aa16.76■□□□□ 0.27
CLN3-259ENST00000637551 MIPOL1Q8TD10 442 aa16.76■□□□□ 0.27
CLN3-259ENST00000637551 TMBIM1Q969X1 311 aa16.76■□□□□ 0.27
CLN3-259ENST00000637551 CCDC115Q96NT0 180 aa16.76■□□□□ 0.27
CLN3-259ENST00000637551 ZCCHC3Q9NUD5 404 aaKnown RBP16.76■□□□□ 0.27
CLN3-259ENST00000637551 DIDO1Q9BTC0 2240 aaKnown RBP16.76■□□□□ 0.27
CLN3-259ENST00000637551 PRAMEF25A6NGN4 478 aa16.75■□□□□ 0.27
CLN3-259ENST00000637551 DUXAA6NLW8 204 aa16.75■□□□□ 0.27
CLN3-259ENST00000637551 EDF1O60869 148 aaKnown RBP16.75■□□□□ 0.27
CLN3-259ENST00000637551 DIAPH2O60879 1101 aa16.75■□□□□ 0.27
CLN3-259ENST00000637551 UGT2B11O75310 529 aa16.75■□□□□ 0.27
CLN3-259ENST00000637551 UNC5CO95185 931 aa16.75■□□□□ 0.27
CLN3-259ENST00000637551 C6orf47O95873 294 aa16.75■□□□□ 0.27
CLN3-259ENST00000637551 AGR2O95994 175 aa16.75■□□□□ 0.27
CLN3-259ENST00000637551 AK1P00568 194 aa16.75■□□□□ 0.27
CLN3-259ENST00000637551 PGRP06401 933 aa16.75■□□□□ 0.27
CLN3-259ENST00000637551 S100A3P33764 101 aa16.75■□□□□ 0.27
CLN3-259ENST00000637551 ATP4BP51164 291 aa16.75■□□□□ 0.27
CLN3-259ENST00000637551 GPR85P60893 370 aa16.75■□□□□ 0.27
CLN3-259ENST00000637551 PPIAP62937 165 aaKnown RBP16.75■□□□□ 0.27
CLN3-259ENST00000637551 HBA1P69905 142 aa16.75■□□□□ 0.27
CLN3-259ENST00000637551 PLGLB1Q02325 96 aa16.75■□□□□ 0.27
CLN3-259ENST00000637551 FAM174BQ3ZCQ3 159 aa16.75■□□□□ 0.27
CLN3-259ENST00000637551 CMPK2Q5EBM0 449 aa16.75■□□□□ 0.27
CLN3-259ENST00000637551 RNFT1Q5M7Z0 435 aa16.75■□□□□ 0.27
CLN3-259ENST00000637551 CDC73Q6P1J9 531 aa16.75■□□□□ 0.27
CLN3-259ENST00000637551 TRIML2Q8N7C3 387 aa16.75■□□□□ 0.27
CLN3-259ENST00000637551 RELTQ969Z4 430 aa16.75■□□□□ 0.27
CLN3-259ENST00000637551 RILPQ96NA2 401 aa16.75■□□□□ 0.27
CLN3-259ENST00000637551 G6PC3Q9BUM1 346 aa16.75■□□□□ 0.27
CLN3-259ENST00000637551 OSBPL11Q9BXB4 747 aa16.75■□□□□ 0.27
CLN3-259ENST00000637551 ACTRT3Q9BYD9 372 aa16.75■□□□□ 0.27
CLN3-259ENST00000637551 PIGUQ9H490 435 aa16.75■□□□□ 0.27
CLN3-259ENST00000637551 METTL7AQ9H8H3 244 aa16.75■□□□□ 0.27
CLN3-259ENST00000637551 ANKRA2Q9H9E1 313 aa16.75■□□□□ 0.27
CLN3-259ENST00000637551 TUBA8Q9NY65 449 aaPredicted RBP16.75■□□□□ 0.27
CLN3-259ENST00000637551 GOLGA8QA0A0J9YX86 632 aa16.74■□□□□ 0.27
CLN3-259ENST00000637551 GOLGA8OA6NCC3 632 aa16.74■□□□□ 0.27
CLN3-259ENST00000637551 LRRC3CA6NJW4 275 aa16.74■□□□□ 0.27
CLN3-259ENST00000637551 GOLGA8NF8WBI6 632 aa16.74■□□□□ 0.27
CLN3-259ENST00000637551 REM1O75628 298 aa16.74■□□□□ 0.27
CLN3-259ENST00000637551 SLC22A3O75751 556 aa16.74■□□□□ 0.27
CLN3-259ENST00000637551 HMGN2P05204 90 aaKnown RBP16.74■□□□□ 0.27
CLN3-259ENST00000637551 ALOX5P09917 674 aa16.74■□□□□ 0.27
CLN3-259ENST00000637551 UQCRFS1P47985 274 aa16.74■□□□□ 0.27
CLN3-259ENST00000637551 CASP6P55212 293 aa16.74■□□□□ 0.27
CLN3-259ENST00000637551 PER3P56645 1201 aa16.74■□□□□ 0.27
CLN3-259ENST00000637551 STX1BP61266 288 aa16.74■□□□□ 0.27
CLN3-259ENST00000637551 NNATQ16517 81 aa16.74■□□□□ 0.27
CLN3-259ENST00000637551 PGS1Q32NB8 556 aa16.74■□□□□ 0.27
CLN3-259ENST00000637551 SPANXN4Q5MJ08 99 aa16.74■□□□□ 0.27
CLN3-259ENST00000637551 AP1ARQ63HQ0 302 aa16.74■□□□□ 0.27
CLN3-259ENST00000637551 TIGD3Q6B0B8 471 aa16.74■□□□□ 0.27
CLN3-259ENST00000637551 NXNQ6DKJ4 435 aa16.74■□□□□ 0.27
CLN3-259ENST00000637551 OR4F3Q6IEY1 312 aa16.74■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 34.3 ms