RNA–Protein interactions for RNA: ENST00000637053.1

VIM-210, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 508 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-210ENST00000637053 ZFP82Q8N141 532 aa2.79□□□□□ -1.96
VIM-210ENST00000637053 STK40Q8N2I9 435 aa2.79□□□□□ -1.96
VIM-210ENST00000637053 PARP8Q8N3A8 854 aa2.79□□□□□ -1.96
VIM-210ENST00000637053 TMEM156Q8N614 296 aa2.79□□□□□ -1.96
VIM-210ENST00000637053 ALLCQ8N6M5 410 aa2.79□□□□□ -1.96
VIM-210ENST00000637053 HORMAD2Q8N7B1 307 aa2.79□□□□□ -1.96
VIM-210ENST00000637053 STPG3Q8N7X2 389 aa2.79□□□□□ -1.96
VIM-210ENST00000637053 NOA1Q8NC60 698 aaKnown RBP2.79□□□□□ -1.96
VIM-210ENST00000637053 SLC44A5Q8NCS7 719 aa2.79□□□□□ -1.96
VIM-210ENST00000637053 ADPRHL1Q8NDY3 354 aa2.79□□□□□ -1.96
VIM-210ENST00000637053 REPS2Q8NFH8 660 aa2.79□□□□□ -1.96
VIM-210ENST00000637053 OR5T2Q8NGG2 359 aa2.79□□□□□ -1.96
VIM-210ENST00000637053 OR2L8Q8NGY9 312 aa2.79□□□□□ -1.96
VIM-210ENST00000637053 OR6X1Q8NH79 312 aa2.79□□□□□ -1.96
VIM-210ENST00000637053 OR2V1Q8NHB1 315 aa2.79□□□□□ -1.96
VIM-210ENST00000637053 NUBPLQ8TB37 319 aa2.79□□□□□ -1.96
VIM-210ENST00000637053 GDPD5Q8WTR4 605 aa2.79□□□□□ -1.96
VIM-210ENST00000637053 NUDCD2Q8WVJ2 157 aa2.79□□□□□ -1.96
VIM-210ENST00000637053 RNF133Q8WVZ7 376 aa2.79□□□□□ -1.96
VIM-210ENST00000637053 DNAJB3Q8WWF6 145 aa2.79□□□□□ -1.96
VIM-210ENST00000637053 C22orf15Q8WYQ4 148 aa2.79□□□□□ -1.96
VIM-210ENST00000637053 SUSD6Q92537 303 aa2.79□□□□□ -1.96
VIM-210ENST00000637053 HGDQ93099 445 aa2.79□□□□□ -1.96
VIM-210ENST00000637053 FAM131CQ96AQ9 280 aa2.79□□□□□ -1.96
VIM-210ENST00000637053 ORAI1Q96D31 301 aa2.79□□□□□ -1.96
VIM-210ENST00000637053 RPL10LQ96L21 214 aaKnown RBP2.79□□□□□ -1.96
VIM-210ENST00000637053 HARBI1Q96MB7 349 aa2.79□□□□□ -1.96
VIM-210ENST00000637053 WFIKKN1Q96NZ8 548 aa2.79□□□□□ -1.96
VIM-210ENST00000637053 MS4A10Q96PG2 267 aa2.79□□□□□ -1.96
VIM-210ENST00000637053 ZNF385AQ96PM9 386 aaKnown RBP2.79□□□□□ -1.96
VIM-210ENST00000637053 HIST1H2AAQ96QV6 131 aa2.79□□□□□ -1.96
VIM-210ENST00000637053 RASL10BQ96S79 203 aa2.79□□□□□ -1.96
VIM-210ENST00000637053 SEPT5Q99719 369 aaPredicted RBP2.79□□□□□ -1.96
VIM-210ENST00000637053 CPNE1Q99829 537 aa2.79□□□□□ -1.96
VIM-210ENST00000637053 ADAM2Q99965 735 aa2.79□□□□□ -1.96
VIM-210ENST00000637053 MYOCQ99972 504 aa2.79□□□□□ -1.96
VIM-210ENST00000637053 NICN1Q9BSH3 213 aa2.79□□□□□ -1.96
VIM-210ENST00000637053 COPS4Q9BT78 406 aa2.79□□□□□ -1.96
VIM-210ENST00000637053 SYT11Q9BT88 431 aa2.79□□□□□ -1.96
VIM-210ENST00000637053 LMF2Q9BU23 707 aaKnown RBP2.79□□□□□ -1.96
VIM-210ENST00000637053 TRMOQ9BU70 441 aa2.79□□□□□ -1.96
VIM-210ENST00000637053 RBM24Q9BX46 236 aaKnown RBP2.79□□□□□ -1.96
VIM-210ENST00000637053 C1QTNF5Q9BXJ0 243 aa2.79□□□□□ -1.96
VIM-210ENST00000637053 AMNQ9BXJ7 453 aa2.79□□□□□ -1.96
VIM-210ENST00000637053 WWTR1Q9GZV5 400 aa2.79□□□□□ -1.96
VIM-210ENST00000637053 HAPLN2Q9GZV7 340 aa2.79□□□□□ -1.96
VIM-210ENST00000637053 C1orf198Q9H425 327 aa2.79□□□□□ -1.96
VIM-210ENST00000637053 EBF3Q9H4W6 596 aa2.79□□□□□ -1.96
VIM-210ENST00000637053 C11orf49Q9H6J7 331 aa2.79□□□□□ -1.96
VIM-210ENST00000637053 CAB39LQ9H9S4 337 aa2.79□□□□□ -1.96
VIM-210ENST00000637053 MCCC2Q9HCC0 563 aa2.79□□□□□ -1.96
VIM-210ENST00000637053 CHMP1AQ9HD42 196 aaPredicted RBP2.79□□□□□ -1.96
VIM-210ENST00000637053 RAB9BQ9NP90 201 aa2.79□□□□□ -1.96
VIM-210ENST00000637053 SLC22A11Q9NSA0 550 aa2.79□□□□□ -1.96
VIM-210ENST00000637053 SMOXQ9NWM0 555 aa2.79□□□□□ -1.96
VIM-210ENST00000637053 ANKRD10Q9NXR5 420 aa2.79□□□□□ -1.96
VIM-210ENST00000637053 GAR1Q9NY12 217 aaKnown RBP2.79□□□□□ -1.96
VIM-210ENST00000637053 STMN3Q9NZ72 180 aa2.79□□□□□ -1.96
VIM-210ENST00000637053 PIPOXQ9P0Z9 390 aa2.79□□□□□ -1.96
VIM-210ENST00000637053 LRWD1Q9UFC0 647 aa2.79□□□□□ -1.96
VIM-210ENST00000637053 DNAI1Q9UI46 699 aa2.79□□□□□ -1.96
VIM-210ENST00000637053 SERTAD3Q9UJW9 196 aa2.79□□□□□ -1.96
VIM-210ENST00000637053 FBXL3Q9UKT7 428 aa2.79□□□□□ -1.96
VIM-210ENST00000637053 DDX52Q9Y2R4 599 aaKnown RBP eCLIP2.79□□□□□ -1.96
VIM-210ENST00000637053 ATG4BQ9Y4P1 393 aa2.79□□□□□ -1.96
VIM-210ENST00000637053 LRP12Q9Y561 859 aa2.79□□□□□ -1.96
VIM-210ENST00000637053 MMP24Q9Y5R2 645 aa2.79□□□□□ -1.96
VIM-210ENST00000637053 TSSC4Q9Y5U2 329 aaPredicted RBP2.79□□□□□ -1.96
VIM-210ENST00000637053 AUP1Q9Y679 476 aa2.79□□□□□ -1.96
VIM-210ENST00000637053 FKBP7Q9Y680 259 aa2.79□□□□□ -1.96
VIM-210ENST00000637053 NPATQ14207 1427 aa2.78□□□□□ -1.96
VIM-210ENST00000637053 NUP155O75694 1391 aa2.78□□□□□ -1.96
VIM-210ENST00000637053 RAB3GAP2Q9H2M9 1393 aa2.78□□□□□ -1.96
VIM-210ENST00000637053 PPIAL4EA0A075B759 164 aa2.78□□□□□ -1.96
VIM-210ENST00000637053 CPED1A4D0V7 1026 aa2.78□□□□□ -1.96
VIM-210ENST00000637053 MANSC4A6NHS7 340 aaPredicted RBP2.78□□□□□ -1.96
VIM-210ENST00000637053 HHLA1C9JL84 531 aa2.78□□□□□ -1.96
VIM-210ENST00000637053 NPIPB11E5RHQ5 1161 aa2.78□□□□□ -1.96
VIM-210ENST00000637053 E5RJQ4 531 aa2.78□□□□□ -1.96
VIM-210ENST00000637053 E9PQ18 207 aa2.78□□□□□ -1.96
VIM-210ENST00000637053 I6L893 689 aaPredicted RBP2.78□□□□□ -1.96
VIM-210ENST00000637053 M0R296 226 aa2.78□□□□□ -1.96
VIM-210ENST00000637053 CYB561D2O14569 222 aa2.78□□□□□ -1.96
VIM-210ENST00000637053 RFXANKO14593 260 aa2.78□□□□□ -1.96
VIM-210ENST00000637053 GOSR2O14653 212 aa2.78□□□□□ -1.96
VIM-210ENST00000637053 NUPL2O15504 423 aaKnown RBP2.78□□□□□ -1.96
VIM-210ENST00000637053 AQP9O43315 295 aa2.78□□□□□ -1.96
VIM-210ENST00000637053 OR1F1O43749 312 aa2.78□□□□□ -1.96
VIM-210ENST00000637053 GMDSO60547 372 aa2.78□□□□□ -1.96
VIM-210ENST00000637053 DPM1O60762 260 aa2.78□□□□□ -1.96
VIM-210ENST00000637053 ZNF217O75362 1048 aa2.78□□□□□ -1.96
VIM-210ENST00000637053 MED6O75586 246 aa2.78□□□□□ -1.96
VIM-210ENST00000637053 SERPINB7O75635 380 aa2.78□□□□□ -1.96
VIM-210ENST00000637053 GATBO75879 557 aaKnown RBP2.78□□□□□ -1.96
VIM-210ENST00000637053 VAPBO95292 243 aa2.78□□□□□ -1.96
VIM-210ENST00000637053 VNN1O95497 513 aa2.78□□□□□ -1.96
VIM-210ENST00000637053 ACSL3O95573 720 aa2.78□□□□□ -1.96
VIM-210ENST00000637053 CPNE6O95741 557 aa2.78□□□□□ -1.96
VIM-210ENST00000637053 IL18BPO95998 194 aa2.78□□□□□ -1.96
VIM-210ENST00000637053 FGGP02679 453 aa2.78□□□□□ -1.96
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms