RNA–Protein interactions for RNA: ENST00000636907.1

CLN3-252, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,679 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-252ENST00000636907 HCN4Q9Y3Q4 1203 aa15.68■□□□□ 0.1
CLN3-252ENST00000636907 CHST2Q9Y4C5 530 aa15.68■□□□□ 0.1
CLN3-252ENST00000636907 TCRBV16S1A1N1A0A5B0 115 aa15.67■□□□□ 0.1
CLN3-252ENST00000636907 A8MUA0 341 aa15.67■□□□□ 0.1
CLN3-252ENST00000636907 GDF9O60383 454 aa15.67■□□□□ 0.1
CLN3-252ENST00000636907 SEMA7AO75326 666 aa15.67■□□□□ 0.1
CLN3-252ENST00000636907 AK1P00568 194 aa15.67■□□□□ 0.1
CLN3-252ENST00000636907 FGF5P12034 268 aa15.67■□□□□ 0.1
CLN3-252ENST00000636907 FUT4P22083 530 aa15.67■□□□□ 0.1
CLN3-252ENST00000636907 TCTN3Q6NUS6 607 aa15.67■□□□□ 0.1
CLN3-252ENST00000636907 FIGNL1Q6PIW4 674 aa15.67■□□□□ 0.1
CLN3-252ENST00000636907 DEF8Q6ZN54 512 aa15.67■□□□□ 0.1
CLN3-252ENST00000636907 ZNF615Q8N8J6 731 aa15.67■□□□□ 0.1
CLN3-252ENST00000636907 SUMF1Q8NBK3 374 aa15.67■□□□□ 0.1
CLN3-252ENST00000636907 AGBL5Q8NDL9 886 aa15.67■□□□□ 0.1
CLN3-252ENST00000636907 OR52J3Q8NH60 311 aa15.67■□□□□ 0.1
CLN3-252ENST00000636907 FBXL20Q96IG2 436 aa15.67■□□□□ 0.1
CLN3-252ENST00000636907 RDH12Q96NR8 316 aa15.67■□□□□ 0.1
CLN3-252ENST00000636907 VN1R1Q9GZP7 353 aa15.67■□□□□ 0.1
CLN3-252ENST00000636907 OR10A5Q9H207 317 aa15.67■□□□□ 0.1
CLN3-252ENST00000636907 ACER3Q9NUN7 267 aa15.67■□□□□ 0.1
CLN3-252ENST00000636907 MKL2Q9ULH7 1088 aa15.67■□□□□ 0.1
CLN3-252ENST00000636907 RALGAPA1Q6GYQ0 2036 aa15.67■□□□□ 0.1
CLN3-252ENST00000636907 PRR33A8MZF0 331 aa15.67■□□□□ 0.1
CLN3-252ENST00000636907 SYT5O00445 386 aa15.67■□□□□ 0.1
CLN3-252ENST00000636907 FFAR1O14842 300 aa15.67■□□□□ 0.1
CLN3-252ENST00000636907 STX11O75558 287 aa15.67■□□□□ 0.1
CLN3-252ENST00000636907 ALBP02768 609 aa15.67■□□□□ 0.1
CLN3-252ENST00000636907 HBQ1P09105 142 aa15.67■□□□□ 0.1
CLN3-252ENST00000636907 GNAO1P09471 354 aa15.67■□□□□ 0.1
CLN3-252ENST00000636907 PRKAR1BP31321 381 aa15.67■□□□□ 0.1
CLN3-252ENST00000636907 CAPGP40121 348 aa15.67■□□□□ 0.1
CLN3-252ENST00000636907 DAPP51397 102 aa15.67■□□□□ 0.1
CLN3-252ENST00000636907 ADARB1P78563 741 aaKnown RBP15.67■□□□□ 0.1
CLN3-252ENST00000636907 ZNHIT3Q15649 155 aaPredicted RBP15.67■□□□□ 0.1
CLN3-252ENST00000636907 NSDHLQ15738 373 aa15.67■□□□□ 0.1
CLN3-252ENST00000636907 GPR68Q15743 365 aa15.67■□□□□ 0.1
CLN3-252ENST00000636907 EXOC3L2Q2M3D2 409 aa15.67■□□□□ 0.1
CLN3-252ENST00000636907 NKAIN1Q4KMZ8 207 aa15.67■□□□□ 0.1
CLN3-252ENST00000636907 ZNF385CQ66K41 422 aaPredicted RBP15.67■□□□□ 0.1
CLN3-252ENST00000636907 DHRS4L2Q6PKH6 230 aa15.67■□□□□ 0.1
CLN3-252ENST00000636907 NPSR1Q6W5P4 371 aa15.67■□□□□ 0.1
CLN3-252ENST00000636907 CYP4Z1Q86W10 505 aa15.67■□□□□ 0.1
CLN3-252ENST00000636907 TMEM151BQ8IW70 566 aa15.67■□□□□ 0.1
CLN3-252ENST00000636907 ZNF619Q8N2I2 560 aa15.67■□□□□ 0.1
CLN3-252ENST00000636907 BMPERQ8N8U9 685 aa15.67■□□□□ 0.1
CLN3-252ENST00000636907 C16orf52Q8NHV5 167 aa15.67■□□□□ 0.1
CLN3-252ENST00000636907 STT3BQ8TCJ2 826 aa15.67■□□□□ 0.1
CLN3-252ENST00000636907 RMND5BQ96G75 393 aaPredicted RBP15.67■□□□□ 0.1
CLN3-252ENST00000636907 TGIF2Q9GZN2 237 aa15.67■□□□□ 0.1
CLN3-252ENST00000636907 SAP130Q9H0E3 1048 aa15.67■□□□□ 0.1
CLN3-252ENST00000636907 TOR3AQ9H497 397 aa15.67■□□□□ 0.1
CLN3-252ENST00000636907 RHCGQ9UBD6 479 aa15.67■□□□□ 0.1
CLN3-252ENST00000636907 KCND3Q9UK17 655 aa15.67■□□□□ 0.1
CLN3-252ENST00000636907 SLC9A8Q9Y2E8 581 aa15.67■□□□□ 0.1
CLN3-252ENST00000636907 IGLV3-12A0A075B6K2 115 aa15.66■□□□□ 0.1
CLN3-252ENST00000636907 CENPVL1A0A0U1RR11 272 aa15.66■□□□□ 0.1
CLN3-252ENST00000636907 MITFO75030 526 aaPredicted RBP15.66■□□□□ 0.1
CLN3-252ENST00000636907 KCNK2O95069 426 aa15.66■□□□□ 0.1
CLN3-252ENST00000636907 LYNP07948 512 aa15.66■□□□□ 0.1
CLN3-252ENST00000636907 RORAP35398 523 aa15.66■□□□□ 0.1
CLN3-252ENST00000636907 FOXL2P58012 376 aa15.66■□□□□ 0.1
CLN3-252ENST00000636907 DCDP81605 110 aaKnown RBP15.66■□□□□ 0.1
CLN3-252ENST00000636907 IL11RAQ14626 422 aa15.66■□□□□ 0.1
CLN3-252ENST00000636907 KDM4DQ6B0I6 523 aa15.66■□□□□ 0.1
CLN3-252ENST00000636907 SHISA6Q6ZSJ9 500 aa15.66■□□□□ 0.1
CLN3-252ENST00000636907 BPHLQ86WA6 291 aaPredicted RBP15.66■□□□□ 0.1
CLN3-252ENST00000636907 NAXDQ8IW45 347 aa15.66■□□□□ 0.1
CLN3-252ENST00000636907 PEX5LQ8IYB4 626 aa15.66■□□□□ 0.1
CLN3-252ENST00000636907 COL27A1Q8IZC6 1860 aaPredicted RBP15.66■□□□□ 0.1
CLN3-252ENST00000636907 ZNF321PQ8N8H1 164 aa15.66■□□□□ 0.1
CLN3-252ENST00000636907 OR4N2Q8NGD1 307 aa15.66■□□□□ 0.1
CLN3-252ENST00000636907 SENP5Q96HI0 755 aaPredicted RBP15.66■□□□□ 0.1
CLN3-252ENST00000636907 MBOAT4Q96T53 435 aa15.66■□□□□ 0.1
CLN3-252ENST00000636907 ARHGDIGQ99819 225 aa15.66■□□□□ 0.1
CLN3-252ENST00000636907 EDEM2Q9BV94 578 aa15.66■□□□□ 0.1
CLN3-252ENST00000636907 TRIM45Q9H8W5 580 aaPredicted RBP15.66■□□□□ 0.1
CLN3-252ENST00000636907 ZNF443Q9Y2A4 671 aaPredicted RBP15.66■□□□□ 0.1
CLN3-252ENST00000636907 GPR55Q9Y2T6 319 aaPredicted RBP15.66■□□□□ 0.1
CLN3-252ENST00000636907 IFT52Q9Y366 437 aa15.66■□□□□ 0.1
CLN3-252ENST00000636907 ZNF318Q5VUA4 2279 aa15.66■□□□□ 0.1
CLN3-252ENST00000636907 ASCC3Q8N3C0 2202 aaKnown RBP15.65■□□□□ 0.1
CLN3-252ENST00000636907 SEC16AO15027 2179 aa15.65■□□□□ 0.1
CLN3-252ENST00000636907 NPIPA5A0A0B4J1W7 369 aa15.65■□□□□ 0.1
CLN3-252ENST00000636907 MAGEA13PA6NCF6 341 aa15.65■□□□□ 0.1
CLN3-252ENST00000636907 AGAP5A6NIR3 686 aa15.65■□□□□ 0.1
CLN3-252ENST00000636907 NPIPA7E9PJI5 369 aa15.65■□□□□ 0.1
CLN3-252ENST00000636907 TNFRSF10AO00220 468 aa15.65■□□□□ 0.1
CLN3-252ENST00000636907 KIAA0513O60268 411 aa15.65■□□□□ 0.1
CLN3-252ENST00000636907 SOX30O94993 753 aa15.65■□□□□ 0.1
CLN3-252ENST00000636907 GADD45GO95257 159 aa15.65■□□□□ 0.1
CLN3-252ENST00000636907 CLIC3O95833 236 aa15.65■□□□□ 0.1
CLN3-252ENST00000636907 NPIPA8P0DM63 369 aa15.65■□□□□ 0.1
CLN3-252ENST00000636907 CCL4P13236 92 aa15.65■□□□□ 0.1
CLN3-252ENST00000636907 LIMS1P48059 325 aa15.65■□□□□ 0.1
CLN3-252ENST00000636907 CHN2P52757 468 aa15.65■□□□□ 0.1
CLN3-252ENST00000636907 HMGA2P52926 109 aa15.65■□□□□ 0.1
CLN3-252ENST00000636907 SPEM2Q0P670 501 aa15.65■□□□□ 0.1
CLN3-252ENST00000636907 ELAVL1Q15717 326 aaKnown RBP15.65■□□□□ 0.1
CLN3-252ENST00000636907 NPTX1Q15818 432 aa15.65■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms