RNA–Protein interactions for RNA: ENST00000636839.1

CLN3-250, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,018 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-250ENST00000636839 HNRNPCL4P0DMR1 293 aa18.66■□□□□ 0.58
CLN3-250ENST00000636839 FCGR1AP12314 374 aa18.66■□□□□ 0.58
CLN3-250ENST00000636839 SLC5A2P31639 672 aa18.66■□□□□ 0.58
CLN3-250ENST00000636839 EMP2P54851 167 aa18.66■□□□□ 0.58
CLN3-250ENST00000636839 AQP4P55087 323 aa18.66■□□□□ 0.58
CLN3-250ENST00000636839 FOXD4Q12950 439 aaPredicted RBP18.66■□□□□ 0.58
CLN3-250ENST00000636839 BIKQ13323 160 aa18.66■□□□□ 0.58
CLN3-250ENST00000636839 GPR68Q15743 365 aa18.66■□□□□ 0.58
CLN3-250ENST00000636839 NRF1Q16656 503 aa18.66■□□□□ 0.58
CLN3-250ENST00000636839 ZCCHC12Q6PEW1 402 aa18.66■□□□□ 0.58
CLN3-250ENST00000636839 LACC1Q8IV20 430 aa18.66■□□□□ 0.58
CLN3-250ENST00000636839 METTL25Q8N6Q8 603 aa18.66■□□□□ 0.58
CLN3-250ENST00000636839 TMBIM1Q969X1 311 aa18.66■□□□□ 0.58
CLN3-250ENST00000636839 STACQ99469 402 aa18.66■□□□□ 0.58
CLN3-250ENST00000636839 IRF2BPLQ9H1B7 796 aa18.66■□□□□ 0.58
CLN3-250ENST00000636839 NDUFAF4Q9P032 175 aa18.66■□□□□ 0.58
CLN3-250ENST00000636839 KCNE5Q9UJ90 142 aa18.66■□□□□ 0.58
CLN3-250ENST00000636839 SATB2Q9UPW6 733 aa18.66■□□□□ 0.58
CLN3-250ENST00000636839 CHST2Q9Y4C5 530 aa18.66■□□□□ 0.58
CLN3-250ENST00000636839 ACOX3O15254 700 aa18.65■□□□□ 0.58
CLN3-250ENST00000636839 KCNK2O95069 426 aa18.65■□□□□ 0.58
CLN3-250ENST00000636839 ZNF26P17031 533 aaPredicted RBP18.65■□□□□ 0.58
CLN3-250ENST00000636839 KCNJ5P48544 419 aa18.65■□□□□ 0.58
CLN3-250ENST00000636839 LAPTM4AQ15012 233 aa18.65■□□□□ 0.58
CLN3-250ENST00000636839 MAPK14Q16539 360 aa18.65■□□□□ 0.58
CLN3-250ENST00000636839 IFI44LQ53G44 452 aa18.65■□□□□ 0.58
CLN3-250ENST00000636839 ANKRD34AQ69YU3 496 aa18.65■□□□□ 0.58
CLN3-250ENST00000636839 ZNF517Q6ZMY9 492 aaPredicted RBP18.65■□□□□ 0.58
CLN3-250ENST00000636839 APOBEC4Q8WW27 367 aaKnown RBP18.65■□□□□ 0.58
CLN3-250ENST00000636839 LZICQ8WZA0 190 aa18.65■□□□□ 0.58
CLN3-250ENST00000636839 TAAR9Q96RI9 348 aa18.65■□□□□ 0.58
CLN3-250ENST00000636839 BARD1Q99728 777 aaKnown RBP18.65■□□□□ 0.58
CLN3-250ENST00000636839 CRB3Q9BUF7 120 aa18.65■□□□□ 0.58
CLN3-250ENST00000636839 AMBRA1Q9C0C7 1298 aa18.65■□□□□ 0.58
CLN3-250ENST00000636839 NRSN2Q9GZP1 204 aa18.65■□□□□ 0.58
CLN3-250ENST00000636839 SLC26A1Q9H2B4 701 aa18.65■□□□□ 0.58
CLN3-250ENST00000636839 C14orf105Q9NVL8 296 aa18.65■□□□□ 0.58
CLN3-250ENST00000636839 RLIMQ9NVW2 624 aa18.65■□□□□ 0.58
CLN3-250ENST00000636839 WDR45Q9Y484 360 aa18.65■□□□□ 0.58
CLN3-250ENST00000636839 DTNAQ9Y4J8 743 aa18.65■□□□□ 0.58
CLN3-250ENST00000636839 PCDHGA8Q9Y5G5 932 aa18.65■□□□□ 0.58
CLN3-250ENST00000636839 DSPPQ9NZW4 1301 aa18.65■□□□□ 0.58
CLN3-250ENST00000636839 PEX12O00623 359 aa18.64■□□□□ 0.58
CLN3-250ENST00000636839 SERPINB7O75635 380 aa18.64■□□□□ 0.58
CLN3-250ENST00000636839 CBR4Q8N4T8 237 aa18.64■□□□□ 0.58
CLN3-250ENST00000636839 CHDHQ8NE62 594 aaPredicted RBP18.64■□□□□ 0.58
CLN3-250ENST00000636839 VANGL1Q8TAA9 524 aaPredicted RBP18.64■□□□□ 0.58
CLN3-250ENST00000636839 LRFN5Q96NI6 719 aa18.64■□□□□ 0.58
CLN3-250ENST00000636839 DEPDC7Q96QD5 511 aa18.64■□□□□ 0.58
CLN3-250ENST00000636839 LIN28AQ9H9Z2 209 aaKnown RBP18.64■□□□□ 0.58
CLN3-250ENST00000636839 DNAJB9Q9UBS3 223 aa18.64■□□□□ 0.58
CLN3-250ENST00000636839 GPR55Q9Y2T6 319 aaPredicted RBP18.64■□□□□ 0.58
CLN3-250ENST00000636839 ZNF451Q9Y4E5 1061 aa18.64■□□□□ 0.58
CLN3-250ENST00000636839 FREM2Q5SZK8 3169 aa18.64■□□□□ 0.57
CLN3-250ENST00000636839 GVINP1Q7Z2Y8 2422 aa18.64■□□□□ 0.57
CLN3-250ENST00000636839 NINQ8N4C6 2090 aa18.64■□□□□ 0.57
CLN3-250ENST00000636839 SEMA7AO75326 666 aa18.64■□□□□ 0.57
CLN3-250ENST00000636839 DEAF1O75398 565 aaPredicted RBP18.64■□□□□ 0.57
CLN3-250ENST00000636839 PDE9AO76083 593 aa18.64■□□□□ 0.57
CLN3-250ENST00000636839 PRSS23O95084 383 aa18.64■□□□□ 0.57
CLN3-250ENST00000636839 ETS2P15036 469 aa18.64■□□□□ 0.57
CLN3-250ENST00000636839 POU6F2P78424 691 aaPredicted RBP18.64■□□□□ 0.57
CLN3-250ENST00000636839 TXNL4AP83876 142 aaKnown RBP18.64■□□□□ 0.57
CLN3-250ENST00000636839 TARDBPQ13148 414 aaKnown RBP eCLIP18.64■□□□□ 0.57
CLN3-250ENST00000636839 ELOAQ14241 798 aaKnown RBP18.64■□□□□ 0.57
CLN3-250ENST00000636839 GNA13Q14344 377 aa18.64■□□□□ 0.57
CLN3-250ENST00000636839 KRT73Q86Y46 540 aa18.64■□□□□ 0.57
CLN3-250ENST00000636839 ZNF578Q96N58 590 aaPredicted RBP18.64■□□□□ 0.57
CLN3-250ENST00000636839 BDH2Q9BUT1 245 aa18.64■□□□□ 0.57
CLN3-250ENST00000636839 BTBD2Q9BX70 525 aa18.64■□□□□ 0.57
CLN3-250ENST00000636839 ZNF350Q9GZX5 532 aa18.64■□□□□ 0.57
CLN3-250ENST00000636839 YY1AP1Q9H869 796 aa18.64■□□□□ 0.57
CLN3-250ENST00000636839 CDC14CA4D256 554 aa18.63■□□□□ 0.57
CLN3-250ENST00000636839 TMX2-CTNND1H3BSU7 103 aa18.63■□□□□ 0.57
CLN3-250ENST00000636839 M0R3H8 397 aa18.63■□□□□ 0.57
CLN3-250ENST00000636839 GNGT2O14610 69 aa18.63■□□□□ 0.57
CLN3-250ENST00000636839 FRS3O43559 492 aa18.63■□□□□ 0.57
CLN3-250ENST00000636839 KLF7O75840 302 aaPredicted RBP18.63■□□□□ 0.57
CLN3-250ENST00000636839 AGR2O95994 175 aa18.63■□□□□ 0.57
CLN3-250ENST00000636839 ALBP02768 609 aa18.63■□□□□ 0.57
CLN3-250ENST00000636839 ZNF23P17027 643 aa18.63■□□□□ 0.57
CLN3-250ENST00000636839 RAB15P59190 212 aa18.63■□□□□ 0.57
CLN3-250ENST00000636839 HPCAP84074 193 aa18.63■□□□□ 0.57
CLN3-250ENST00000636839 C9orf40Q8IXQ3 194 aa18.63■□□□□ 0.57
CLN3-250ENST00000636839 CLIP4Q8N3C7 705 aa18.63■□□□□ 0.57
CLN3-250ENST00000636839 OR7G1Q8NGA0 311 aa18.63■□□□□ 0.57
CLN3-250ENST00000636839 FKBP10Q96AY3 582 aa18.63■□□□□ 0.57
CLN3-250ENST00000636839 PRR14Q9BWN1 585 aa18.63■□□□□ 0.57
CLN3-250ENST00000636839 CNOT1A5YKK6 2376 aaKnown RBP18.63■□□□□ 0.57
CLN3-250ENST00000636839 CCDC187A0A096LP49 1063 aa18.62■□□□□ 0.57
CLN3-250ENST00000636839 DKK1O94907 266 aa18.62■□□□□ 0.57
CLN3-250ENST00000636839 UMODP07911 640 aa18.62■□□□□ 0.57
CLN3-250ENST00000636839 GPR143P51810 404 aa18.62■□□□□ 0.57
CLN3-250ENST00000636839 ZNHIT3Q15649 155 aaPredicted RBP18.62■□□□□ 0.57
CLN3-250ENST00000636839 ZNF311Q5JNZ3 666 aa18.62■□□□□ 0.57
CLN3-250ENST00000636839 ZBTB49Q6ZSB9 765 aa18.62■□□□□ 0.57
CLN3-250ENST00000636839 OR14A16Q8NHC5 309 aa18.62■□□□□ 0.57
CLN3-250ENST00000636839 DAZLQ92904 295 aaKnown RBP18.62■□□□□ 0.57
CLN3-250ENST00000636839 WDR77Q9BQA1 342 aaPredicted RBP18.62■□□□□ 0.57
CLN3-250ENST00000636839 RHCGQ9UBD6 479 aa18.62■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 67.5 ms