RNA–Protein interactions for RNA: ENST00000627232.2

PNKP-220, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 1,530 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-220ENST00000627232 ANKRD13BQ86YJ7 626 aa20.58■□□□□ 0.89
PNKP-220ENST00000627232 ZNF595Q8IYB9 648 aa20.58■□□□□ 0.89
PNKP-220ENST00000627232 UBALD2Q8IYN6 164 aa20.58■□□□□ 0.89
PNKP-220ENST00000627232 ZNF619Q8N2I2 560 aa20.58■□□□□ 0.89
PNKP-220ENST00000627232 OR4K5Q8NGD3 323 aa20.58■□□□□ 0.89
PNKP-220ENST00000627232 FCGR1BQ92637 280 aa20.58■□□□□ 0.89
PNKP-220ENST00000627232 DIO2Q92813 273 aa20.58■□□□□ 0.89
PNKP-220ENST00000627232 HOXB13Q92826 284 aaPredicted RBP20.58■□□□□ 0.89
PNKP-220ENST00000627232 SLC38A4Q969I6 547 aa20.58■□□□□ 0.89
PNKP-220ENST00000627232 RHNO1Q9BSD3 238 aa20.58■□□□□ 0.89
PNKP-220ENST00000627232 COPS4Q9BT78 406 aa20.58■□□□□ 0.89
PNKP-220ENST00000627232 IER2Q9BTL4 223 aa20.58■□□□□ 0.89
PNKP-220ENST00000627232 ACOT13Q9NPJ3 140 aa20.58■□□□□ 0.89
PNKP-220ENST00000627232 WARS2Q9UGM6 360 aaKnown RBP20.58■□□□□ 0.89
PNKP-220ENST00000627232 MKLN1Q9UL63 735 aa20.58■□□□□ 0.89
PNKP-220ENST00000627232 A0A0A6YYC8 382 aaPredicted RBP20.58■□□□□ 0.88
PNKP-220ENST00000627232 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa20.58■□□□□ 0.88
PNKP-220ENST00000627232 I3L1I5 382 aaPredicted RBP20.58■□□□□ 0.88
PNKP-220ENST00000627232 STK25O00506 426 aa20.58■□□□□ 0.88
PNKP-220ENST00000627232 STX11O75558 287 aa20.58■□□□□ 0.88
PNKP-220ENST00000627232 CYP7B1O75881 506 aa20.58■□□□□ 0.88
PNKP-220ENST00000627232 CCNYL3P0C7X3 344 aa20.58■□□□□ 0.88
PNKP-220ENST00000627232 IFNGR2P38484 337 aa20.58■□□□□ 0.88
PNKP-220ENST00000627232 MAP2K4P45985 399 aa20.58■□□□□ 0.88
PNKP-220ENST00000627232 CSNK1EP49674 416 aaKnown RBP20.58■□□□□ 0.88
PNKP-220ENST00000627232 EMP3P54852 163 aa20.58■□□□□ 0.88
PNKP-220ENST00000627232 RGS8P57771 180 aaPredicted RBP20.58■□□□□ 0.88
PNKP-220ENST00000627232 SNRPGP62308 76 aaKnown RBP20.58■□□□□ 0.88
PNKP-220ENST00000627232 IGLV3-21P80748 117 aaPredicted RBP20.58■□□□□ 0.88
PNKP-220ENST00000627232 ST3GAL3Q11203 375 aa20.58■□□□□ 0.88
PNKP-220ENST00000627232 DCST2Q5T1A1 773 aa20.58■□□□□ 0.88
PNKP-220ENST00000627232 C12orf73Q69YU5 71 aa20.58■□□□□ 0.88
PNKP-220ENST00000627232 SHISA5Q8N114 240 aa20.58■□□□□ 0.88
PNKP-220ENST00000627232 CARFQ8N187 725 aa20.58■□□□□ 0.88
PNKP-220ENST00000627232 COX18Q8N8Q8 333 aa20.58■□□□□ 0.88
PNKP-220ENST00000627232 GGHQ92820 318 aa20.58■□□□□ 0.88
PNKP-220ENST00000627232 ZDHHC12Q96GR4 267 aa20.58■□□□□ 0.88
PNKP-220ENST00000627232 FUNDC2Q9BWH2 189 aa20.58■□□□□ 0.88
PNKP-220ENST00000627232 PDE7BQ9NP56 450 aa20.58■□□□□ 0.88
PNKP-220ENST00000627232 POLE3Q9NRF9 147 aa20.58■□□□□ 0.88
PNKP-220ENST00000627232 ENPP5Q9UJA9 477 aa20.58■□□□□ 0.88
PNKP-220ENST00000627232 GPR55Q9Y2T6 319 aaPredicted RBP20.58■□□□□ 0.88
PNKP-220ENST00000627232 HYKKA2RU49 373 aa20.57■□□□□ 0.88
PNKP-220ENST00000627232 AGAP5A6NIR3 686 aa20.57■□□□□ 0.88
PNKP-220ENST00000627232 RHPN2P1A8MT19 583 aa20.57■□□□□ 0.88
PNKP-220ENST00000627232 AP3D1O14617 1153 aa20.57■□□□□ 0.88
PNKP-220ENST00000627232 BCAT2O15382 392 aaPredicted RBP20.57■□□□□ 0.88
PNKP-220ENST00000627232 CTNSO60931 367 aa20.57■□□□□ 0.88
PNKP-220ENST00000627232 MED26O95402 600 aa20.57■□□□□ 0.88
PNKP-220ENST00000627232 TP53P04637 393 aaPredicted RBP20.57■□□□□ 0.88
PNKP-220ENST00000627232 CDK1P06493 297 aa20.57■□□□□ 0.88
PNKP-220ENST00000627232 CT62P0C5K7 136 aa20.57■□□□□ 0.88
PNKP-220ENST00000627232 MMP11P24347 488 aa20.57■□□□□ 0.88
PNKP-220ENST00000627232 POU1F1P28069 291 aa20.57■□□□□ 0.88
PNKP-220ENST00000627232 ENTPD8Q5MY95 495 aa20.57■□□□□ 0.88
PNKP-220ENST00000627232 UBE2UQ5VVX9 321 aa20.57■□□□□ 0.88
PNKP-220ENST00000627232 TMEM236Q5W0B7 351 aa20.57■□□□□ 0.88
PNKP-220ENST00000627232 ZNF836Q6ZNA1 936 aa20.57■□□□□ 0.88
PNKP-220ENST00000627232 PTCHD4Q6ZW05 846 aa20.57■□□□□ 0.88
PNKP-220ENST00000627232 NLGN4XQ8N0W4 816 aa20.57■□□□□ 0.88
PNKP-220ENST00000627232 CLIP4Q8N3C7 705 aa20.57■□□□□ 0.88
PNKP-220ENST00000627232 TOR1AIP2Q8NFQ8 470 aa20.57■□□□□ 0.88
PNKP-220ENST00000627232 TRUB1Q8WWH5 349 aaKnown RBP20.57■□□□□ 0.88
PNKP-220ENST00000627232 POLR2J2Q9GZM3 115 aaKnown RBP20.57■□□□□ 0.88
PNKP-220ENST00000627232 CLN6Q9NWW5 311 aa20.57■□□□□ 0.88
PNKP-220ENST00000627232 CSNK1G3Q9Y6M4 447 aa20.57■□□□□ 0.88
PNKP-220ENST00000627232 FITM1A5D6W6 292 aa20.56■□□□□ 0.88
PNKP-220ENST00000627232 OR10H2O60403 315 aa20.56■□□□□ 0.88
PNKP-220ENST00000627232 TPST2O60704 377 aa20.56■□□□□ 0.88
PNKP-220ENST00000627232 NKX2-2O95096 273 aa20.56■□□□□ 0.88
PNKP-220ENST00000627232 OR5F1O95221 314 aa20.56■□□□□ 0.88
PNKP-220ENST00000627232 ZBTB11O95625 1053 aaPredicted RBP20.56■□□□□ 0.88
PNKP-220ENST00000627232 FADS2O95864 444 aaKnown RBP20.56■□□□□ 0.88
PNKP-220ENST00000627232 DBIP07108 87 aaKnown RBP20.56■□□□□ 0.88
PNKP-220ENST00000627232 GUSBP08236 651 aa20.56■□□□□ 0.88
PNKP-220ENST00000627232 AFF3P51826 1226 aaKnown RBP20.56■□□□□ 0.88
PNKP-220ENST00000627232 GFERP55789 205 aa20.56■□□□□ 0.88
PNKP-220ENST00000627232 EEF1A1P68104 462 aaKnown RBP20.56■□□□□ 0.88
PNKP-220ENST00000627232 POU6F2P78424 691 aaPredicted RBP20.56■□□□□ 0.88
PNKP-220ENST00000627232 ZER1Q7Z7L7 766 aa20.56■□□□□ 0.88
PNKP-220ENST00000627232 VWA5B2Q8N398 1253 aa20.56■□□□□ 0.88
PNKP-220ENST00000627232 TGM7Q96PF1 710 aa20.56■□□□□ 0.88
PNKP-220ENST00000627232 EVA1AQ9H8M9 152 aa20.56■□□□□ 0.88
PNKP-220ENST00000627232 ERVMER34-1Q9H9K5 563 aa20.56■□□□□ 0.88
PNKP-220ENST00000627232 UCKL1Q9NWZ5 548 aa20.56■□□□□ 0.88
PNKP-220ENST00000627232 CNOT2Q9NZN8 540 aaKnown RBP20.56■□□□□ 0.88
PNKP-220ENST00000627232 TNRC18O15417 2968 aaPredicted RBP20.56■□□□□ 0.88
PNKP-220ENST00000627232 TRIOBPQ9H2D6 2365 aa20.55■□□□□ 0.88
PNKP-220ENST00000627232 A0A1W2PPW3 197 aa20.55■□□□□ 0.88
PNKP-220ENST00000627232 SDC3O75056 442 aa20.55■□□□□ 0.88
PNKP-220ENST00000627232 CBX7O95931 251 aa20.55■□□□□ 0.88
PNKP-220ENST00000627232 AVPR1BP47901 424 aa20.55■□□□□ 0.88
PNKP-220ENST00000627232 ST13P50502 369 aaKnown RBP20.55■□□□□ 0.88
PNKP-220ENST00000627232 EXOSC7Q15024 291 aaKnown RBP20.55■□□□□ 0.88
PNKP-220ENST00000627232 TBCEQ15813 527 aaPredicted RBP20.55■□□□□ 0.88
PNKP-220ENST00000627232 TMEM201Q5SNT2 666 aa20.55■□□□□ 0.88
PNKP-220ENST00000627232 SLC16A12Q6ZSM3 486 aa20.55■□□□□ 0.88
PNKP-220ENST00000627232 GALNT12Q8IXK2 581 aa20.55■□□□□ 0.88
PNKP-220ENST00000627232 GNPDA2Q8TDQ7 276 aa20.55■□□□□ 0.88
PNKP-220ENST00000627232 GPR151Q8TDV0 419 aa20.55■□□□□ 0.88
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms