RNA–Protein interactions for RNA: ENST00000625299.1

PNKP-218, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 428 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-218ENST00000625299 CLDN15P56746 228 aa13.21□□□□□ -0.29
PNKP-218ENST00000625299 CORO7P57737 925 aa13.21□□□□□ -0.29
PNKP-218ENST00000625299 RPS4XP62701 263 aaKnown RBP13.21□□□□□ -0.29
PNKP-218ENST00000625299 STX5Q13190 355 aa13.21□□□□□ -0.29
PNKP-218ENST00000625299 EFR3AQ14156 821 aa13.21□□□□□ -0.29
PNKP-218ENST00000625299 SGO1Q5FBB7 561 aa13.21□□□□□ -0.29
PNKP-218ENST00000625299 GRTP1Q5TC63 336 aa13.21□□□□□ -0.29
PNKP-218ENST00000625299 SH2D5Q6ZV89 423 aa13.21□□□□□ -0.29
PNKP-218ENST00000625299 LARP4Q71RC2 724 aaKnown RBP eCLIP13.21□□□□□ -0.29
PNKP-218ENST00000625299 PPM1NQ8N819 430 aa13.21□□□□□ -0.29
PNKP-218ENST00000625299 ZNF611Q8N823 705 aa13.21□□□□□ -0.29
PNKP-218ENST00000625299 GBP7Q8N8V2 638 aaPredicted RBP13.21□□□□□ -0.29
PNKP-218ENST00000625299 L3MBTL4Q8NA19 623 aa13.21□□□□□ -0.29
PNKP-218ENST00000625299 AKAP1Q92667 903 aaKnown RBP eCLIP13.21□□□□□ -0.29
PNKP-218ENST00000625299 EFHD2Q96C19 240 aaPredicted RBP13.21□□□□□ -0.29
PNKP-218ENST00000625299 SLC35A4Q96G79 324 aa13.21□□□□□ -0.29
PNKP-218ENST00000625299 REG4Q9BYZ8 158 aa13.21□□□□□ -0.29
PNKP-218ENST00000625299 DSN1Q9H410 356 aa13.21□□□□□ -0.29
PNKP-218ENST00000625299 NOL11Q9H8H0 719 aaKnown RBP13.21□□□□□ -0.29
PNKP-218ENST00000625299 PSD3Q9NYI0 1048 aa13.21□□□□□ -0.29
PNKP-218ENST00000625299 CPSF2Q9P2I0 782 aaKnown RBP13.21□□□□□ -0.29
PNKP-218ENST00000625299 CES1P1Q9UKY3 287 aa13.21□□□□□ -0.29
PNKP-218ENST00000625299 GPR55Q9Y2T6 319 aaPredicted RBP13.21□□□□□ -0.29
PNKP-218ENST00000625299 MRPS18CQ9Y3D5 142 aaKnown RBP13.21□□□□□ -0.29
PNKP-218ENST00000625299 GUCY1B2O75343 617 aa13.2□□□□□ -0.3
PNKP-218ENST00000625299 TNFRSF21O75509 655 aa13.2□□□□□ -0.3
PNKP-218ENST00000625299 ALDH18A1P54886 795 aaKnown RBP13.2□□□□□ -0.3
PNKP-218ENST00000625299 MRPS25P82663 173 aaKnown RBP13.2□□□□□ -0.3
PNKP-218ENST00000625299 SGCBQ16585 318 aa13.2□□□□□ -0.3
PNKP-218ENST00000625299 FRG2Q64ET8 278 aa13.2□□□□□ -0.3
PNKP-218ENST00000625299 C3orf62Q6ZUJ4 267 aa13.2□□□□□ -0.3
PNKP-218ENST00000625299 FAM214BQ7L5A3 538 aa13.2□□□□□ -0.3
PNKP-218ENST00000625299 COMMD6Q7Z4G1 85 aa13.2□□□□□ -0.3
PNKP-218ENST00000625299 OR52B6Q8NGF0 335 aa13.2□□□□□ -0.3
PNKP-218ENST00000625299 FRG2BQ96QU4 278 aa13.2□□□□□ -0.3
PNKP-218ENST00000625299 LRRC1Q9BTT6 524 aa13.2□□□□□ -0.3
PNKP-218ENST00000625299 STMN4Q9H169 189 aaPredicted RBP13.2□□□□□ -0.3
PNKP-218ENST00000625299 ADAM29Q9UKF5 820 aa13.2□□□□□ -0.3
PNKP-218ENST00000625299 CLEC4AQ9UMR7 237 aa13.2□□□□□ -0.3
PNKP-218ENST00000625299 ACOT9Q9Y305 439 aa13.2□□□□□ -0.3
PNKP-218ENST00000625299 ZNF337Q9Y3M9 751 aa13.2□□□□□ -0.3
PNKP-218ENST00000625299 ZNF175Q9Y473 711 aa13.2□□□□□ -0.3
PNKP-218ENST00000625299 ZNF780BQ9Y6R6 833 aa13.2□□□□□ -0.3
PNKP-218ENST00000625299 OR7A17O14581 309 aa13.19□□□□□ -0.3
PNKP-218ENST00000625299 TSPAN2O60636 221 aa13.19□□□□□ -0.3
PNKP-218ENST00000625299 TMCC2O75069 709 aa13.19□□□□□ -0.3
PNKP-218ENST00000625299 PLGP00747 810 aaPredicted RBP13.19□□□□□ -0.3
PNKP-218ENST00000625299 ALDOAP04075 364 aaKnown RBP13.19□□□□□ -0.3
PNKP-218ENST00000625299 PPP3CBP16298 524 aa13.19□□□□□ -0.3
PNKP-218ENST00000625299 CCNG1P51959 295 aa13.19□□□□□ -0.3
PNKP-218ENST00000625299 GAS1P54826 345 aa13.19□□□□□ -0.3
PNKP-218ENST00000625299 CLDN20P56880 219 aa13.19□□□□□ -0.3
PNKP-218ENST00000625299 RPS3AP61247 264 aaKnown RBP13.19□□□□□ -0.3
PNKP-218ENST00000625299 OCRLQ01968 901 aa13.19□□□□□ -0.3
PNKP-218ENST00000625299 IFT88Q13099 833 aa13.19□□□□□ -0.3
PNKP-218ENST00000625299 CENPLQ8N0S6 344 aaPredicted RBP13.19□□□□□ -0.3
PNKP-218ENST00000625299 METTL4Q8N3J2 472 aa13.19□□□□□ -0.3
PNKP-218ENST00000625299 RHEBL1Q8TAI7 183 aa13.19□□□□□ -0.3
PNKP-218ENST00000625299 KAT2AQ92830 837 aa13.19□□□□□ -0.3
PNKP-218ENST00000625299 GFM2Q969S9 779 aaKnown RBP13.19□□□□□ -0.3
PNKP-218ENST00000625299 GTPBP3Q969Y2 492 aaKnown RBP13.19□□□□□ -0.3
PNKP-218ENST00000625299 CNRIP1Q96F85 164 aaPredicted RBP13.19□□□□□ -0.3
PNKP-218ENST00000625299 TRMT61AQ96FX7 289 aaKnown RBP13.19□□□□□ -0.3
PNKP-218ENST00000625299 BTBD9Q96Q07 612 aa13.19□□□□□ -0.3
PNKP-218ENST00000625299 PRRG4Q9BZD6 226 aa13.19□□□□□ -0.3
PNKP-218ENST00000625299 ACTR6Q9GZN1 396 aa13.19□□□□□ -0.3
PNKP-218ENST00000625299 MED11Q9P086 117 aa13.19□□□□□ -0.3
PNKP-218ENST00000625299 PSME2Q9UL46 239 aa13.19□□□□□ -0.3
PNKP-218ENST00000625299 SLC12A4Q9UP95 1085 aa13.19□□□□□ -0.3
PNKP-218ENST00000625299 EMC9Q9Y3B6 208 aa13.19□□□□□ -0.3
PNKP-218ENST00000625299 PRR14LQ5THK1 2151 aa13.19□□□□□ -0.3
PNKP-218ENST00000625299 OR2M5A3KFT3 312 aa13.18□□□□□ -0.3
PNKP-218ENST00000625299 PHF1O43189 567 aaPredicted RBP13.18□□□□□ -0.3
PNKP-218ENST00000625299 TLX2O43763 284 aaPredicted RBP13.18□□□□□ -0.3
PNKP-218ENST00000625299 CD5LO43866 347 aa13.18□□□□□ -0.3
PNKP-218ENST00000625299 GMFGO60234 142 aa13.18□□□□□ -0.3
PNKP-218ENST00000625299 AQP8O94778 261 aa13.18□□□□□ -0.3
PNKP-218ENST00000625299 ESRRBO95718 433 aa13.18□□□□□ -0.3
PNKP-218ENST00000625299 CT45A8P0DMV1 189 aa13.18□□□□□ -0.3
PNKP-218ENST00000625299 CT45A9P0DMV2 189 aa13.18□□□□□ -0.3
PNKP-218ENST00000625299 FCGR2AP12318 317 aa13.18□□□□□ -0.3
PNKP-218ENST00000625299 TCP1P17987 556 aaKnown RBP13.18□□□□□ -0.3
PNKP-218ENST00000625299 EVI2BP34910 448 aa13.18□□□□□ -0.3
PNKP-218ENST00000625299 IDUAP35475 653 aa13.18□□□□□ -0.3
PNKP-218ENST00000625299 ACVR1BP36896 505 aa13.18□□□□□ -0.3
PNKP-218ENST00000625299 CDKN1AP38936 164 aa13.18□□□□□ -0.3
PNKP-218ENST00000625299 CTBP2P56545 445 aa13.18□□□□□ -0.3
PNKP-218ENST00000625299 FAM83EQ2M2I3 478 aa13.18□□□□□ -0.3
PNKP-218ENST00000625299 ERCC6LQ2NKX8 1250 aa13.18□□□□□ -0.3
PNKP-218ENST00000625299 CHRFAM7AQ494W8 412 aa13.18□□□□□ -0.3
PNKP-218ENST00000625299 CT45A2Q5DJT8 189 aa13.18□□□□□ -0.3
PNKP-218ENST00000625299 SH2D4BQ5SQS7 431 aa13.18□□□□□ -0.3
PNKP-218ENST00000625299 NPSR1Q6W5P4 371 aa13.18□□□□□ -0.3
PNKP-218ENST00000625299 HIPK1Q86Z02 1210 aa13.18□□□□□ -0.3
PNKP-218ENST00000625299 SLC44A2Q8IWA5 706 aaPredicted RBP13.18□□□□□ -0.3
PNKP-218ENST00000625299 CCDC116Q8IYX3 515 aa13.18□□□□□ -0.3
PNKP-218ENST00000625299 FADS6Q8N9I5 356 aa13.18□□□□□ -0.3
PNKP-218ENST00000625299 OR2M3Q8NG83 312 aa13.18□□□□□ -0.3
PNKP-218ENST00000625299 OR4N2Q8NGD1 307 aa13.18□□□□□ -0.3
PNKP-218ENST00000625299 ZBED6CLQ96FA7 236 aaPredicted RBP13.18□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 265.2 ms