RNA–Protein interactions for RNA: ENST00000618700.4

UPF3A-211, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 1,210 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-211ENST00000618700 ASB15Q8WXK1 588 aa18.17■□□□□ 0.5
UPF3A-211ENST00000618700 SPACA9Q96E40 222 aaPredicted RBP18.17■□□□□ 0.5
UPF3A-211ENST00000618700 OMA1Q96E52 524 aa18.17■□□□□ 0.5
UPF3A-211ENST00000618700 SLC35A4Q96G79 324 aa18.17■□□□□ 0.5
UPF3A-211ENST00000618700 UTP23Q9BRU9 249 aaKnown RBP18.17■□□□□ 0.5
UPF3A-211ENST00000618700 OR51I1Q9H343 314 aa18.17■□□□□ 0.5
UPF3A-211ENST00000618700 PLA2G3Q9NZ20 509 aa18.17■□□□□ 0.5
UPF3A-211ENST00000618700 CBLCQ9ULV8 474 aa18.17■□□□□ 0.5
UPF3A-211ENST00000618700 BSNQ9UPA5 3926 aa18.17■□□□□ 0.5
UPF3A-211ENST00000618700 GXYLT2A0PJZ3 443 aa18.16■□□□□ 0.5
UPF3A-211ENST00000618700 A8MVJ9 347 aa18.16■□□□□ 0.5
UPF3A-211ENST00000618700 CLIC1O00299 241 aa18.16■□□□□ 0.5
UPF3A-211ENST00000618700 NEURL1O76050 574 aa18.16■□□□□ 0.5
UPF3A-211ENST00000618700 SOX30O94993 753 aa18.16■□□□□ 0.5
UPF3A-211ENST00000618700 NPPAP01160 153 aa18.16■□□□□ 0.5
UPF3A-211ENST00000618700 NAGAP17050 411 aa18.16■□□□□ 0.5
UPF3A-211ENST00000618700 PIGAP37287 484 aa18.16■□□□□ 0.5
UPF3A-211ENST00000618700 CD96P40200 585 aa18.16■□□□□ 0.5
UPF3A-211ENST00000618700 CASRP41180 1078 aa18.16■□□□□ 0.5
UPF3A-211ENST00000618700 CD97P48960 835 aa18.16■□□□□ 0.5
UPF3A-211ENST00000618700 TMED10P49755 219 aaKnown RBP18.16■□□□□ 0.5
UPF3A-211ENST00000618700 CASP9P55211 416 aa18.16■□□□□ 0.5
UPF3A-211ENST00000618700 PLCXD2Q0VAA5 305 aa18.16■□□□□ 0.5
UPF3A-211ENST00000618700 KRT72Q14CN4 511 aa18.16■□□□□ 0.5
UPF3A-211ENST00000618700 NTRK2Q16620 822 aa18.16■□□□□ 0.5
UPF3A-211ENST00000618700 LACTB2Q53H82 288 aaPredicted RBP18.16■□□□□ 0.5
UPF3A-211ENST00000618700 RUNDC3AQ59EK9 446 aa18.16■□□□□ 0.5
UPF3A-211ENST00000618700 COX20Q5RI15 118 aa18.16■□□□□ 0.5
UPF3A-211ENST00000618700 TNFAIP8L2Q6P589 184 aaPredicted RBP18.16■□□□□ 0.5
UPF3A-211ENST00000618700 ANGPTL8Q6UXH0 198 aa18.16■□□□□ 0.5
UPF3A-211ENST00000618700 ZNF227Q86WZ6 799 aa18.16■□□□□ 0.5
UPF3A-211ENST00000618700 DND1Q8IYX4 353 aaKnown RBP18.16■□□□□ 0.5
UPF3A-211ENST00000618700 HORMAD2Q8N7B1 307 aa18.16■□□□□ 0.5
UPF3A-211ENST00000618700 MDS2Q8NDY4 140 aa18.16■□□□□ 0.5
UPF3A-211ENST00000618700 GPR151Q8TDV0 419 aa18.16■□□□□ 0.5
UPF3A-211ENST00000618700 ADAMTS15Q8TE58 950 aa18.16■□□□□ 0.5
UPF3A-211ENST00000618700 PIK3R3Q92569 461 aa18.16■□□□□ 0.5
UPF3A-211ENST00000618700 CDS1Q92903 461 aa18.16■□□□□ 0.5
UPF3A-211ENST00000618700 TMBIM1Q969X1 311 aa18.16■□□□□ 0.5
UPF3A-211ENST00000618700 ANKRD27Q96NW4 1050 aa18.16■□□□□ 0.5
UPF3A-211ENST00000618700 IL1RL2Q9HB29 575 aa18.16■□□□□ 0.5
UPF3A-211ENST00000618700 ARL8BQ9NVJ2 186 aa18.16■□□□□ 0.5
UPF3A-211ENST00000618700 HPF1Q9NWY4 346 aa18.16■□□□□ 0.5
UPF3A-211ENST00000618700 ANKRD10Q9NXR5 420 aa18.16■□□□□ 0.5
UPF3A-211ENST00000618700 NIPSNAP3AQ9UFN0 247 aaPredicted RBP18.16■□□□□ 0.5
UPF3A-211ENST00000618700 OR10H1Q9Y4A9 318 aa18.16■□□□□ 0.5
UPF3A-211ENST00000618700 CSAG2Q9Y5P2 127 aa18.16■□□□□ 0.5
UPF3A-211ENST00000618700 KCNE3Q9Y6H6 103 aa18.16■□□□□ 0.5
UPF3A-211ENST00000618700 EXPH5Q8NEV8 1989 aa18.16■□□□□ 0.5
UPF3A-211ENST00000618700 CNTRLQ7Z7A1 2325 aa18.16■□□□□ 0.5
UPF3A-211ENST00000618700 IGSF10Q6WRI0 2623 aa18.15■□□□□ 0.5
UPF3A-211ENST00000618700 DUXAA6NLW8 204 aa18.15■□□□□ 0.5
UPF3A-211ENST00000618700 TSPAN2O60636 221 aa18.15■□□□□ 0.5
UPF3A-211ENST00000618700 PPM1BO75688 479 aa18.15■□□□□ 0.5
UPF3A-211ENST00000618700 F10P00742 488 aa18.15■□□□□ 0.5
UPF3A-211ENST00000618700 PPIBP23284 216 aaKnown RBP18.15■□□□□ 0.5
UPF3A-211ENST00000618700 CYB561P49447 251 aa18.15■□□□□ 0.5
UPF3A-211ENST00000618700 ARG2P78540 354 aa18.15■□□□□ 0.5
UPF3A-211ENST00000618700 MRPS22P82650 360 aaKnown RBP18.15■□□□□ 0.5
UPF3A-211ENST00000618700 CBX1P83916 185 aa18.15■□□□□ 0.5
UPF3A-211ENST00000618700 CAPRIN1Q14444 709 aaKnown RBP18.15■□□□□ 0.5
UPF3A-211ENST00000618700 DDX59Q5T1V6 619 aaKnown RBP eCLIP18.15■□□□□ 0.5
UPF3A-211ENST00000618700 ASB18Q6ZVZ8 466 aa18.15■□□□□ 0.5
UPF3A-211ENST00000618700 CYP4Z2PQ8N1L4 340 aa18.15■□□□□ 0.5
UPF3A-211ENST00000618700 ZADH2Q8N4Q0 377 aa18.15■□□□□ 0.5
UPF3A-211ENST00000618700 COX18Q8N8Q8 333 aa18.15■□□□□ 0.5
UPF3A-211ENST00000618700 FAM110BQ8TC76 370 aa18.15■□□□□ 0.5
UPF3A-211ENST00000618700 LRRC58Q96CX6 371 aa18.15■□□□□ 0.5
UPF3A-211ENST00000618700 RMND5BQ96G75 393 aaPredicted RBP18.15■□□□□ 0.5
UPF3A-211ENST00000618700 SIGLEC12Q96PQ1 595 aa18.15■□□□□ 0.5
UPF3A-211ENST00000618700 UBL7Q96S82 380 aaPredicted RBP18.15■□□□□ 0.5
UPF3A-211ENST00000618700 BTBD2Q9BX70 525 aa18.15■□□□□ 0.5
UPF3A-211ENST00000618700 IKZF5Q9H5V7 419 aa18.15■□□□□ 0.5
UPF3A-211ENST00000618700 SH2D2AQ9NP31 389 aa18.15■□□□□ 0.5
UPF3A-211ENST00000618700 GID8Q9NWU2 228 aa18.15■□□□□ 0.5
UPF3A-211ENST00000618700 LRFN1Q9P244 771 aa18.15■□□□□ 0.5
UPF3A-211ENST00000618700 TAGLN3Q9UI15 199 aa18.15■□□□□ 0.5
UPF3A-211ENST00000618700 ZFYVE26Q68DK2 2539 aa18.15■□□□□ 0.5
UPF3A-211ENST00000618700 ATRXP46100 2492 aa18.14■□□□□ 0.5
UPF3A-211ENST00000618700 HMGN4O00479 90 aa18.14■□□□□ 0.49
UPF3A-211ENST00000618700 KCNK2O95069 426 aa18.14■□□□□ 0.49
UPF3A-211ENST00000618700 AGR2O95994 175 aa18.14■□□□□ 0.49
UPF3A-211ENST00000618700 IGKV1D-16P01601 117 aa18.14■□□□□ 0.49
UPF3A-211ENST00000618700 OR12D1P0DN82 309 aa18.14■□□□□ 0.49
UPF3A-211ENST00000618700 SFTPCP11686 197 aa18.14■□□□□ 0.49
UPF3A-211ENST00000618700 TNFSF10P50591 281 aa18.14■□□□□ 0.49
UPF3A-211ENST00000618700 POU6F2P78424 691 aaPredicted RBP18.14■□□□□ 0.49
UPF3A-211ENST00000618700 OC90Q02509 493 aaPredicted RBP18.14■□□□□ 0.49
UPF3A-211ENST00000618700 FADDQ13158 208 aa18.14■□□□□ 0.49
UPF3A-211ENST00000618700 RGNQ15493 299 aa18.14■□□□□ 0.49
UPF3A-211ENST00000618700 OR1C1Q15619 314 aa18.14■□□□□ 0.49
UPF3A-211ENST00000618700 HEPHL1Q6MZM0 1159 aa18.14■□□□□ 0.49
UPF3A-211ENST00000618700 C8orf82Q6P1X6 216 aaPredicted RBP18.14■□□□□ 0.49
UPF3A-211ENST00000618700 IL20RBQ6UXL0 311 aa18.14■□□□□ 0.49
UPF3A-211ENST00000618700 HACD2Q6Y1H2 254 aa18.14■□□□□ 0.49
UPF3A-211ENST00000618700 TRPM8Q7Z2W7 1104 aa18.14■□□□□ 0.49
UPF3A-211ENST00000618700 RBMXL3Q8N7X1 1067 aaKnown RBP18.14■□□□□ 0.49
UPF3A-211ENST00000618700 BCORP1Q8N888 145 aa18.14■□□□□ 0.49
UPF3A-211ENST00000618700 CHDHQ8NE62 594 aaPredicted RBP18.14■□□□□ 0.49
UPF3A-211ENST00000618700 HGDQ93099 445 aa18.14■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms