RNA–Protein interactions for RNA: ENST00000599848.5

UPF1-207, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 1 (best) BASIC

Gene UPF1, Length 5,311 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-207ENST00000599848 ZNF578Q96N58 590 aaPredicted RBP19.38■□□□□ 0.69
UPF1-207ENST00000599848 THSD1Q9NS62 852 aa19.38■□□□□ 0.69
UPF1-207ENST00000599848 AIG1Q9NVV5 245 aa19.38■□□□□ 0.69
UPF1-207ENST00000599848 ACSL6Q9UKU0 697 aa19.38■□□□□ 0.69
UPF1-207ENST00000599848 PROZP22891 400 aa19.38■□□□□ 0.69
UPF1-207ENST00000599848 SFTPDP35247 375 aa19.38■□□□□ 0.69
UPF1-207ENST00000599848 EIF2DP41214 584 aaKnown RBP19.38■□□□□ 0.69
UPF1-207ENST00000599848 KIR2DL3P43628 341 aa19.38■□□□□ 0.69
UPF1-207ENST00000599848 EEF1A1P68104 462 aaKnown RBP19.38■□□□□ 0.69
UPF1-207ENST00000599848 C3orf38Q5JPI3 329 aa19.38■□□□□ 0.69
UPF1-207ENST00000599848 CPEB3Q8NE35 698 aaKnown RBP19.38■□□□□ 0.69
UPF1-207ENST00000599848 GAREM1Q9H706 876 aa19.38■□□□□ 0.69
UPF1-207ENST00000599848 LHX6Q9UPM6 363 aa19.38■□□□□ 0.69
UPF1-207ENST00000599848 HS3ST3A1Q9Y663 406 aa19.38■□□□□ 0.69
UPF1-207ENST00000599848 ITM2AO43736 263 aa19.38■□□□□ 0.69
UPF1-207ENST00000599848 AHRP35869 848 aa19.38■□□□□ 0.69
UPF1-207ENST00000599848 ADAM17P78536 824 aa19.38■□□□□ 0.69
UPF1-207ENST00000599848 GPRIN1Q7Z2K8 1008 aa19.38■□□□□ 0.69
UPF1-207ENST00000599848 NANOGQ9H9S0 305 aa19.38■□□□□ 0.69
UPF1-207ENST00000599848 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa19.38■□□□□ 0.69
UPF1-207ENST00000599848 ACVR1BP36896 505 aa19.38■□□□□ 0.69
UPF1-207ENST00000599848 PITPNBP48739 271 aa19.38■□□□□ 0.69
UPF1-207ENST00000599848 JAG1P78504 1218 aa19.38■□□□□ 0.69
UPF1-207ENST00000599848 ZNF92Q03936 586 aa19.38■□□□□ 0.69
UPF1-207ENST00000599848 TMEFF1Q8IYR6 380 aa19.38■□□□□ 0.69
UPF1-207ENST00000599848 KCNE4Q8WWG9 221 aa19.38■□□□□ 0.69
UPF1-207ENST00000599848 TMEM203Q969S6 136 aa19.38■□□□□ 0.69
UPF1-207ENST00000599848 BOD1Q96IK1 185 aa19.38■□□□□ 0.69
UPF1-207ENST00000599848 PTTG2Q9NZH5 202 aa19.38■□□□□ 0.69
UPF1-207ENST00000599848 SLC17A6Q9P2U8 582 aa19.38■□□□□ 0.69
UPF1-207ENST00000599848 IFT172Q9UG01 1749 aa19.37■□□□□ 0.69
UPF1-207ENST00000599848 TRBV2A0A0J9YWF9 115 aa19.37■□□□□ 0.69
UPF1-207ENST00000599848 FAM189A1O60320 539 aa19.37■□□□□ 0.69
UPF1-207ENST00000599848 BEST1O76090 585 aa19.37■□□□□ 0.69
UPF1-207ENST00000599848 CDK4P11802 303 aa19.37■□□□□ 0.69
UPF1-207ENST00000599848 ELMOD2Q8IZ81 293 aa19.37■□□□□ 0.69
UPF1-207ENST00000599848 TAS2R1Q9NYW7 299 aa19.37■□□□□ 0.69
UPF1-207ENST00000599848 TMEM9Q9P0T7 183 aa19.37■□□□□ 0.69
UPF1-207ENST00000599848 XRN1Q8IZH2 1706 aaKnown RBP19.37■□□□□ 0.69
UPF1-207ENST00000599848 GTF2F2P13984 249 aa19.37■□□□□ 0.69
UPF1-207ENST00000599848 CD27P26842 260 aa19.37■□□□□ 0.69
UPF1-207ENST00000599848 TMEM173Q86WV6 379 aaPredicted RBP19.37■□□□□ 0.69
UPF1-207ENST00000599848 SECISBP2Q96T21 854 aaKnown RBP19.37■□□□□ 0.69
UPF1-207ENST00000599848 SH3BGRL2Q9UJC5 107 aa19.37■□□□□ 0.69
UPF1-207ENST00000599848 SLC22A7Q9Y694 548 aa19.37■□□□□ 0.69
UPF1-207ENST00000599848 EEDO75530 441 aaKnown RBP19.37■□□□□ 0.69
UPF1-207ENST00000599848 LCKP06239 509 aa19.37■□□□□ 0.69
UPF1-207ENST00000599848 ZNF350Q9GZX5 532 aa19.37■□□□□ 0.69
UPF1-207ENST00000599848 SALL4Q9UJQ4 1053 aa19.37■□□□□ 0.69
UPF1-207ENST00000599848 PCDHA9Q9Y5H5 950 aa19.37■□□□□ 0.69
UPF1-207ENST00000599848 MYO5BQ9ULV0 1848 aa19.37■□□□□ 0.69
UPF1-207ENST00000599848 A0A0A6YYC8 382 aaPredicted RBP19.37■□□□□ 0.69
UPF1-207ENST00000599848 I3L1I5 382 aaPredicted RBP19.37■□□□□ 0.69
UPF1-207ENST00000599848 RDH16O75452 317 aa19.37■□□□□ 0.69
UPF1-207ENST00000599848 CNMDO75829 334 aa19.37■□□□□ 0.69
UPF1-207ENST00000599848 PXNP49023 591 aaPredicted RBP19.37■□□□□ 0.69
UPF1-207ENST00000599848 AKR1D1P51857 326 aa19.37■□□□□ 0.69
UPF1-207ENST00000599848 RUNX2Q13950 521 aa19.37■□□□□ 0.69
UPF1-207ENST00000599848 SLC35G1Q2M3R5 365 aa19.37■□□□□ 0.69
UPF1-207ENST00000599848 LIPIQ6XZB0 460 aa19.37■□□□□ 0.69
UPF1-207ENST00000599848 TMPRSS12Q86WS5 348 aa19.37■□□□□ 0.69
UPF1-207ENST00000599848 OR52E1Q8NGJ3 308 aa19.37■□□□□ 0.69
UPF1-207ENST00000599848 GPR150Q8NGU9 434 aa19.37■□□□□ 0.69
UPF1-207ENST00000599848 DRGXA6NNA5 263 aa19.36■□□□□ 0.69
UPF1-207ENST00000599848 H0YAE9 185 aa19.36■□□□□ 0.69
UPF1-207ENST00000599848 GPR171O14626 319 aa19.36■□□□□ 0.69
UPF1-207ENST00000599848 PENKP01210 267 aaPredicted RBP19.36■□□□□ 0.69
UPF1-207ENST00000599848 ZNF888P0CJ79 500 aaPredicted RBP19.36■□□□□ 0.69
UPF1-207ENST00000599848 IL3RAP26951 378 aa19.36■□□□□ 0.69
UPF1-207ENST00000599848 EXT1Q16394 746 aa19.36■□□□□ 0.69
UPF1-207ENST00000599848 KDELC1Q6UW63 502 aa19.36■□□□□ 0.69
UPF1-207ENST00000599848 ADAMTS16Q8TE57 1224 aa19.36■□□□□ 0.69
UPF1-207ENST00000599848 PINK1Q9BXM7 581 aa19.36■□□□□ 0.69
UPF1-207ENST00000599848 OPA3Q9H6K4 179 aa19.36■□□□□ 0.69
UPF1-207ENST00000599848 TMEM184BQ9Y519 407 aaPredicted RBP19.36■□□□□ 0.69
UPF1-207ENST00000599848 ANHXE9PGG2 379 aa19.36■□□□□ 0.69
UPF1-207ENST00000599848 EIF4EP06730 217 aaKnown RBP19.36■□□□□ 0.69
UPF1-207ENST00000599848 S100PP25815 95 aa19.36■□□□□ 0.69
UPF1-207ENST00000599848 PCLAFQ15004 111 aa19.36■□□□□ 0.69
UPF1-207ENST00000599848 COMMD6Q7Z4G1 85 aa19.36■□□□□ 0.69
UPF1-207ENST00000599848 ZNF554Q86TJ5 538 aa19.36■□□□□ 0.69
UPF1-207ENST00000599848 MKXQ8IYA7 352 aa19.36■□□□□ 0.69
UPF1-207ENST00000599848 MMP21Q8N119 569 aa19.36■□□□□ 0.69
UPF1-207ENST00000599848 ZNF784Q8NCA9 323 aaPredicted RBP19.36■□□□□ 0.69
UPF1-207ENST00000599848 SLC41A3Q96GZ6 507 aa19.36■□□□□ 0.69
UPF1-207ENST00000599848 RNF6Q9Y252 685 aa19.36■□□□□ 0.69
UPF1-207ENST00000599848 CTBSQ01459 385 aa19.36■□□□□ 0.69
UPF1-207ENST00000599848 ZBED5Q49AG3 693 aa19.36■□□□□ 0.69
UPF1-207ENST00000599848 TMEM135Q86UB9 458 aa19.36■□□□□ 0.69
UPF1-207ENST00000599848 POC1BQ8TC44 478 aa19.36■□□□□ 0.69
UPF1-207ENST00000599848 DDX1Q92499 740 aaKnown RBP19.36■□□□□ 0.69
UPF1-207ENST00000599848 TIMD4Q96H15 378 aa19.36■□□□□ 0.69
UPF1-207ENST00000599848 SLC6A16Q9GZN6 736 aa19.36■□□□□ 0.69
UPF1-207ENST00000599848 HSPE1-MOB4S4R3N1 261 aa19.36■□□□□ 0.69
UPF1-207ENST00000599848 FXYD6-FXYD2A0A087WZ82 144 aa19.36■□□□□ 0.69
UPF1-207ENST00000599848 NAA10P41227 235 aaPredicted RBP19.36■□□□□ 0.69
UPF1-207ENST00000599848 RPS23P62266 143 aaKnown RBP19.36■□□□□ 0.69
UPF1-207ENST00000599848 CAMK2DQ13557 499 aa19.36■□□□□ 0.69
UPF1-207ENST00000599848 HACD2Q6Y1H2 254 aa19.36■□□□□ 0.69
UPF1-207ENST00000599848 TBC1D15Q8TC07 691 aa19.36■□□□□ 0.69
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms