RNA–Protein interactions for RNA: ENST00000597172.5

TRIM28-208, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 577 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-208ENST00000597172 SLC2A12Q8TD20 617 aa8.75□□□□□ -1.01
TRIM28-208ENST00000597172 METTL21AQ8WXB1 218 aa8.75□□□□□ -1.01
TRIM28-208ENST00000597172 UTP4Q969X6 686 aaKnown RBP8.75□□□□□ -1.01
TRIM28-208ENST00000597172 ZNF583Q96ND8 569 aa8.75□□□□□ -1.01
TRIM28-208ENST00000597172 THTPAQ9BU02 230 aa8.75□□□□□ -1.01
TRIM28-208ENST00000597172 THUMPD3Q9BV44 507 aaKnown RBP8.75□□□□□ -1.01
TRIM28-208ENST00000597172 NUDT9Q9BW91 350 aa8.75□□□□□ -1.01
TRIM28-208ENST00000597172 C3orf14Q9HBI5 128 aa8.75□□□□□ -1.01
TRIM28-208ENST00000597172 ZCCHC3Q9NUD5 404 aaKnown RBP8.75□□□□□ -1.01
TRIM28-208ENST00000597172 SDAD1Q9NVU7 687 aaKnown RBP eCLIP8.75□□□□□ -1.017e-7■□□□□ 8.2
TRIM28-208ENST00000597172 NDE1Q9NXR1 346 aa8.75□□□□□ -1.01
TRIM28-208ENST00000597172 PPIEQ9UNP9 301 aaKnown RBP8.75□□□□□ -1.01
TRIM28-208ENST00000597172 USP22Q9UPT9 525 aa8.75□□□□□ -1.01
TRIM28-208ENST00000597172 ERVK-19Q9WJR5 959 aa8.75□□□□□ -1.01
TRIM28-208ENST00000597172 HS3ST3B1Q9Y662 390 aa8.75□□□□□ -1.01
TRIM28-208ENST00000597172 CLCA3PQ9Y6N3 262 aa8.75□□□□□ -1.01
TRIM28-208ENST00000597172 SEC23IPQ9Y6Y8 1000 aaKnown RBP8.75□□□□□ -1.01
TRIM28-208ENST00000597172 A0A1W2PQ72 361 aa8.74□□□□□ -1.01
TRIM28-208ENST00000597172 PRAMEF27A3QJZ7 478 aa8.74□□□□□ -1.01
TRIM28-208ENST00000597172 SYNDIG1LA6NDD5 238 aa8.74□□□□□ -1.01
TRIM28-208ENST00000597172 PRORSD1PA6NEY8 169 aa8.74□□□□□ -1.01
TRIM28-208ENST00000597172 SAGE2PA6NJ88 616 aa8.74□□□□□ -1.01
TRIM28-208ENST00000597172 EVPLLA8MZ36 301 aa8.74□□□□□ -1.01
TRIM28-208ENST00000597172 TNFRSF21O75509 655 aa8.74□□□□□ -1.01
TRIM28-208ENST00000597172 SEC24DO94855 1032 aaPredicted RBP8.74□□□□□ -1.01
TRIM28-208ENST00000597172 KRT75O95678 551 aa8.74□□□□□ -1.01
TRIM28-208ENST00000597172 IGHEP01854 428 aa8.74□□□□□ -1.01
TRIM28-208ENST00000597172 HMGN2P05204 90 aaKnown RBP8.74□□□□□ -1.01
TRIM28-208ENST00000597172 NUDT7P0C024 238 aa8.74□□□□□ -1.01
TRIM28-208ENST00000597172 COX6A1P12074 109 aa8.74□□□□□ -1.01
TRIM28-208ENST00000597172 ETFAP13804 333 aa8.74□□□□□ -1.01
TRIM28-208ENST00000597172 MATN1P21941 496 aa8.74□□□□□ -1.01
TRIM28-208ENST00000597172 MSX2P35548 267 aaPredicted RBP8.74□□□□□ -1.01
TRIM28-208ENST00000597172 CHI3L1P36222 383 aaPredicted RBP8.74□□□□□ -1.01
TRIM28-208ENST00000597172 PGM1P36871 562 aa8.74□□□□□ -1.01
TRIM28-208ENST00000597172 MAN2A2P49641 1150 aa8.74□□□□□ -1.01
TRIM28-208ENST00000597172 SLC37A1P57057 533 aa8.74□□□□□ -1.01
TRIM28-208ENST00000597172 EEFSECP57772 596 aaKnown RBP8.74□□□□□ -1.01
TRIM28-208ENST00000597172 KRTAP10-9P60411 292 aa8.74□□□□□ -1.01
TRIM28-208ENST00000597172 KCNJ2P63252 427 aa8.74□□□□□ -1.01
TRIM28-208ENST00000597172 LIPEQ05469 1076 aa8.74□□□□□ -1.01
TRIM28-208ENST00000597172 EEF1A2Q05639 463 aaKnown RBP8.74□□□□□ -1.01
TRIM28-208ENST00000597172 TP53BP2Q13625 1128 aa8.74□□□□□ -1.01
TRIM28-208ENST00000597172 IL10RAQ13651 578 aa8.74□□□□□ -1.01
TRIM28-208ENST00000597172 SPDYE7PQ495Y7 208 aa8.74□□□□□ -1.01
TRIM28-208ENST00000597172 DNAL1Q4LDG9 190 aa8.74□□□□□ -1.01
TRIM28-208ENST00000597172 PIGGQ5H8A4 983 aa8.74□□□□□ -1.01
TRIM28-208ENST00000597172 BNC2Q6ZN30 1099 aaPredicted RBP8.74□□□□□ -1.01
TRIM28-208ENST00000597172 WDR53Q7Z5U6 358 aaPredicted RBP8.74□□□□□ -1.01
TRIM28-208ENST00000597172 APLFQ8IW19 511 aaPredicted RBP8.74□□□□□ -1.01
TRIM28-208ENST00000597172 ZNF295-AS1Q8N0V1 137 aa8.74□□□□□ -1.01
TRIM28-208ENST00000597172 HORMAD2Q8N7B1 307 aa8.74□□□□□ -1.01
TRIM28-208ENST00000597172 RNF148Q8N7C7 305 aa8.74□□□□□ -1.01
TRIM28-208ENST00000597172 MORN4Q8NDC4 146 aa8.74□□□□□ -1.01
TRIM28-208ENST00000597172 OR7G1Q8NGA0 311 aa8.74□□□□□ -1.01
TRIM28-208ENST00000597172 OR11G2Q8NGC1 345 aa8.74□□□□□ -1.01
TRIM28-208ENST00000597172 OR56A1Q8NGH5 318 aa8.74□□□□□ -1.01
TRIM28-208ENST00000597172 OR1N1Q8NGS0 311 aa8.74□□□□□ -1.01
TRIM28-208ENST00000597172 OR10A6Q8NH74 314 aa8.74□□□□□ -1.01
TRIM28-208ENST00000597172 OR14A16Q8NHC5 309 aa8.74□□□□□ -1.01
TRIM28-208ENST00000597172 MIPOL1Q8TD10 442 aa8.74□□□□□ -1.01
TRIM28-208ENST00000597172 ADAMTS17Q8TE56 1095 aa8.74□□□□□ -1.01
TRIM28-208ENST00000597172 HOXB13Q92826 284 aaPredicted RBP8.74□□□□□ -1.01
TRIM28-208ENST00000597172 DAZLQ92904 295 aaKnown RBP8.74□□□□□ -1.01
TRIM28-208ENST00000597172 MOAP1Q96BY2 351 aa8.74□□□□□ -1.01
TRIM28-208ENST00000597172 SNRNP40Q96DI7 357 aaKnown RBP8.74□□□□□ -1.01
TRIM28-208ENST00000597172 FBXL20Q96IG2 436 aa8.74□□□□□ -1.01
TRIM28-208ENST00000597172 IMMP1LQ96LU5 166 aa8.74□□□□□ -1.01
TRIM28-208ENST00000597172 SH3GL1Q99961 368 aa8.74□□□□□ -1.01
TRIM28-208ENST00000597172 YIPF4Q9BSR8 244 aa8.74□□□□□ -1.01
TRIM28-208ENST00000597172 CNPPD1Q9BV87 410 aa8.74□□□□□ -1.01
TRIM28-208ENST00000597172 ZNF700Q9H0M5 742 aa8.74□□□□□ -1.01
TRIM28-208ENST00000597172 OR10A5Q9H207 317 aa8.74□□□□□ -1.01
TRIM28-208ENST00000597172 PIF1Q9H611 641 aa8.74□□□□□ -1.01
TRIM28-208ENST00000597172 SPAG4Q9NPE6 437 aa8.74□□□□□ -1.01
TRIM28-208ENST00000597172 DDX18Q9NVP1 670 aaKnown RBP8.74□□□□□ -1.01
TRIM28-208ENST00000597172 ASF1BQ9NVP2 202 aa8.74□□□□□ -1.01
TRIM28-208ENST00000597172 ADA2Q9NZK5 511 aa8.74□□□□□ -1.01
TRIM28-208ENST00000597172 ZNF223Q9UK11 482 aaPredicted RBP8.74□□□□□ -1.01
TRIM28-208ENST00000597172 PRPF19Q9UMS4 504 aaKnown RBP8.74□□□□□ -1.01
TRIM28-208ENST00000597172 DTX4Q9Y2E6 619 aa8.74□□□□□ -1.01
TRIM28-208ENST00000597172 PADI2Q9Y2J8 665 aa8.74□□□□□ -1.01
TRIM28-208ENST00000597172 KCNE3Q9Y6H6 103 aa8.74□□□□□ -1.01
TRIM28-208ENST00000597172 CCDC88CQ9P219 2028 aa8.74□□□□□ -1.01
TRIM28-208ENST00000597172 TLN2Q9Y4G6 2542 aa8.74□□□□□ -1.01
TRIM28-208ENST00000597172 NUP214P35658 2090 aaPredicted RBP8.73□□□□□ -1.01
TRIM28-208ENST00000597172 IGHV1-45A0A0A0MS14 117 aa8.73□□□□□ -1.01
TRIM28-208ENST00000597172 C15orf38-AP3S2A0A0A6YYH1 394 aa8.73□□□□□ -1.01
TRIM28-208ENST00000597172 MASP2O00187 686 aa8.73□□□□□ -1.01
TRIM28-208ENST00000597172 HMGN4O00479 90 aa8.73□□□□□ -1.01
TRIM28-208ENST00000597172 PCDH17O14917 1159 aa8.73□□□□□ -1.01
TRIM28-208ENST00000597172 CREG1O75629 220 aa8.73□□□□□ -1.01
TRIM28-208ENST00000597172 PDE5AO76074 875 aa8.73□□□□□ -1.01
TRIM28-208ENST00000597172 ACP2P11117 423 aa8.73□□□□□ -1.01
TRIM28-208ENST00000597172 BMP2P12643 396 aa8.73□□□□□ -1.01
TRIM28-208ENST00000597172 PPIBP23284 216 aaKnown RBP8.73□□□□□ -1.01
TRIM28-208ENST00000597172 SSTR2P30874 369 aa8.73□□□□□ -1.01
TRIM28-208ENST00000597172 OTX2P32243 289 aa8.73□□□□□ -1.01
TRIM28-208ENST00000597172 CRATP43155 626 aa8.73□□□□□ -1.01
TRIM28-208ENST00000597172 GSK3BP49841 420 aa8.73□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 39.4 ms