RNA–Protein interactions for RNA: ENST00000596104.5

LIG1-209, Transcript of DNA ligase 1, humanhuman

TSL 3

Gene LIG1, Length 531 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-209ENST00000596104 VSTM2LQ96N03 204 aa8.99□□□□□ -0.97
LIG1-209ENST00000596104 NAPGQ99747 312 aaPredicted RBP8.99□□□□□ -0.97
LIG1-209ENST00000596104 REPIN1Q9BWE0 567 aaKnown RBP8.99□□□□□ -0.97
LIG1-209ENST00000596104 KCNF1Q9H3M0 494 aa8.99□□□□□ -0.97
LIG1-209ENST00000596104 ANKRA2Q9H9E1 313 aa8.99□□□□□ -0.97
LIG1-209ENST00000596104 RNF122Q9H9V4 155 aa8.99□□□□□ -0.97
LIG1-209ENST00000596104 FARSBQ9NSD9 589 aaKnown RBP8.99□□□□□ -0.97
LIG1-209ENST00000596104 ZNF701Q9NV72 531 aaPredicted RBP8.99□□□□□ -0.97
LIG1-209ENST00000596104 RNF14Q9UBS8 474 aa8.99□□□□□ -0.97
LIG1-209ENST00000596104 PSME2Q9UL46 239 aa8.99□□□□□ -0.97
LIG1-209ENST00000596104 SLC12A4Q9UP95 1085 aa8.99□□□□□ -0.97
LIG1-209ENST00000596104 STX16-NPEPL1H3BU86 382 aa8.98□□□□□ -0.97
LIG1-209ENST00000596104 STX16O14662 325 aa8.98□□□□□ -0.97
LIG1-209ENST00000596104 TNFRSF21O75509 655 aa8.98□□□□□ -0.97
LIG1-209ENST00000596104 THBDP07204 575 aa8.98□□□□□ -0.97
LIG1-209ENST00000596104 PEPDP12955 493 aa8.98□□□□□ -0.97
LIG1-209ENST00000596104 ARL1P40616 181 aaPredicted RBP8.98□□□□□ -0.97
LIG1-209ENST00000596104 SUCLG1P53597 346 aaKnown RBP8.98□□□□□ -0.97
LIG1-209ENST00000596104 DSCR4P56555 118 aaPredicted RBP8.98□□□□□ -0.97
LIG1-209ENST00000596104 IFT88Q13099 833 aa8.98□□□□□ -0.97
LIG1-209ENST00000596104 EFR3AQ14156 821 aa8.98□□□□□ -0.97
LIG1-209ENST00000596104 SGO1Q5FBB7 561 aa8.98□□□□□ -0.97
LIG1-209ENST00000596104 TTC19Q6DKK2 380 aaPredicted RBP8.98□□□□□ -0.97
LIG1-209ENST00000596104 KLC3Q6P597 504 aa8.98□□□□□ -0.97
LIG1-209ENST00000596104 ZDHHC24Q6UX98 284 aa8.98□□□□□ -0.97
LIG1-209ENST00000596104 CHMP1BQ7LBR1 199 aa8.98□□□□□ -0.97
LIG1-209ENST00000596104 UBQLNLQ8IYU4 475 aa8.98□□□□□ -0.97
LIG1-209ENST00000596104 OR4F6Q8NGB9 312 aa8.98□□□□□ -0.97
LIG1-209ENST00000596104 OR4K17Q8NGC6 315 aa8.98□□□□□ -0.97
LIG1-209ENST00000596104 FNDC9Q8TBE3 224 aa8.98□□□□□ -0.97
LIG1-209ENST00000596104 FBXO25Q8TCJ0 367 aa8.98□□□□□ -0.97
LIG1-209ENST00000596104 CAVIN3Q969G5 261 aa8.98□□□□□ -0.97
LIG1-209ENST00000596104 ERP27Q96DN0 273 aa8.98□□□□□ -0.97
LIG1-209ENST00000596104 PHF21BQ96EK2 531 aa8.98□□□□□ -0.97
LIG1-209ENST00000596104 ZC3HAV1LQ96H79 300 aaKnown RBP8.98□□□□□ -0.97
LIG1-209ENST00000596104 ZNF845Q96IR2 970 aaPredicted RBP8.98□□□□□ -0.97
LIG1-209ENST00000596104 SLC39A3Q9BRY0 314 aa8.98□□□□□ -0.97
LIG1-209ENST00000596104 ELOVL6Q9H5J4 265 aa8.98□□□□□ -0.97
LIG1-209ENST00000596104 ZNF175Q9Y473 711 aa8.98□□□□□ -0.97
LIG1-209ENST00000596104 EXPH5Q8NEV8 1989 aa8.97□□□□□ -0.97
LIG1-209ENST00000596104 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP8.97□□□□□ -0.97
LIG1-209ENST00000596104 PPP6CO00743 305 aa8.97□□□□□ -0.97
LIG1-209ENST00000596104 KLF4O43474 513 aa8.97□□□□□ -0.97
LIG1-209ENST00000596104 CRLF1O75462 422 aa8.97□□□□□ -0.97
LIG1-209ENST00000596104 BCAS2O75934 225 aaPredicted RBP8.97□□□□□ -0.97
LIG1-209ENST00000596104 SOX30O94993 753 aa8.97□□□□□ -0.97
LIG1-209ENST00000596104 PDYNP01213 254 aa8.97□□□□□ -0.97
LIG1-209ENST00000596104 RPS17P08708 135 aaKnown RBP8.97□□□□□ -0.97
LIG1-209ENST00000596104 IL12BP29460 328 aa8.97□□□□□ -0.97
LIG1-209ENST00000596104 ALDH9A1P49189 494 aa8.97□□□□□ -0.97
LIG1-209ENST00000596104 PNLIPRP2P54317 469 aa8.97□□□□□ -0.97
LIG1-209ENST00000596104 PLTPP55058 493 aa8.97□□□□□ -0.97
LIG1-209ENST00000596104 CLDN20P56880 219 aa8.97□□□□□ -0.97
LIG1-209ENST00000596104 TRA2BP62995 288 aaKnown RBP8.97□□□□□ -0.97
LIG1-209ENST00000596104 FGFBP1Q14512 234 aa8.97□□□□□ -0.97
LIG1-209ENST00000596104 TRADDQ15628 312 aa8.97□□□□□ -0.97
LIG1-209ENST00000596104 ANKRD34AQ69YU3 496 aa8.97□□□□□ -0.97
LIG1-209ENST00000596104 LETMD1Q6P1Q0 360 aa8.97□□□□□ -0.97
LIG1-209ENST00000596104 PLEKHM3Q6ZWE6 761 aa8.97□□□□□ -0.97
LIG1-209ENST00000596104 LARP4Q71RC2 724 aaKnown RBP eCLIP8.97□□□□□ -0.97
LIG1-209ENST00000596104 RPS27LQ71UM5 84 aaKnown RBP8.97□□□□□ -0.97
LIG1-209ENST00000596104 MILR1Q7Z6M3 343 aa8.97□□□□□ -0.97
LIG1-209ENST00000596104 CCDC25Q86WR0 208 aa8.97□□□□□ -0.97
LIG1-209ENST00000596104 CCDC116Q8IYX3 515 aa8.97□□□□□ -0.97
LIG1-209ENST00000596104 MEIOBQ8N635 442 aa8.97□□□□□ -0.97
LIG1-209ENST00000596104 C1orf52Q8N6N3 182 aaKnown RBP8.97□□□□□ -0.97
LIG1-209ENST00000596104 SPATA4Q8NEY3 305 aa8.97□□□□□ -0.97
LIG1-209ENST00000596104 OR2M3Q8NG83 312 aa8.97□□□□□ -0.97
LIG1-209ENST00000596104 OR4N2Q8NGD1 307 aa8.97□□□□□ -0.97
LIG1-209ENST00000596104 OR9A2Q8NGT5 310 aa8.97□□□□□ -0.97
LIG1-209ENST00000596104 SELENOMQ8WWX9 145 aa8.97□□□□□ -0.97
LIG1-209ENST00000596104 KAT2AQ92830 837 aa8.97□□□□□ -0.97
LIG1-209ENST00000596104 MRRFQ96E11 262 aaKnown RBP8.97□□□□□ -0.97
LIG1-209ENST00000596104 FAIM2Q9BWQ8 316 aa8.97□□□□□ -0.97
LIG1-209ENST00000596104 PINK1Q9BXM7 581 aa8.97□□□□□ -0.97
LIG1-209ENST00000596104 RTN4RQ9BZR6 473 aa8.97□□□□□ -0.97
LIG1-209ENST00000596104 DSN1Q9H410 356 aa8.97□□□□□ -0.97
LIG1-209ENST00000596104 BRF2Q9HAW0 419 aa8.97□□□□□ -0.97
LIG1-209ENST00000596104 ZNF225Q9UK10 706 aa8.97□□□□□ -0.97
LIG1-209ENST00000596104 UTS2RQ9UKP6 389 aa8.97□□□□□ -0.97
LIG1-209ENST00000596104 ZNF337Q9Y3M9 751 aa8.97□□□□□ -0.97
LIG1-209ENST00000596104 ZNF780BQ9Y6R6 833 aa8.97□□□□□ -0.97
LIG1-209ENST00000596104 MED12LQ86YW9 2145 aa8.96□□□□□ -0.97
LIG1-209ENST00000596104 ROS1P08922 2347 aa8.96□□□□□ -0.97
LIG1-209ENST00000596104 OR2M5A3KFT3 312 aa8.96□□□□□ -0.98
LIG1-209ENST00000596104 SEC14L5O43304 696 aa8.96□□□□□ -0.98
LIG1-209ENST00000596104 SCO2O43819 266 aa8.96□□□□□ -0.98
LIG1-209ENST00000596104 FADS1O60427 444 aa8.96□□□□□ -0.98
LIG1-209ENST00000596104 PLOD3O60568 738 aa8.96□□□□□ -0.98
LIG1-209ENST00000596104 TMCC2O75069 709 aa8.96□□□□□ -0.98
LIG1-209ENST00000596104 AQP8O94778 261 aa8.96□□□□□ -0.98
LIG1-209ENST00000596104 PLAUP00749 431 aa8.96□□□□□ -0.98
LIG1-209ENST00000596104 RBP1P09455 135 aa8.96□□□□□ -0.98
LIG1-209ENST00000596104 HK1P19367 917 aa8.96□□□□□ -0.98
LIG1-209ENST00000596104 TBXA2RP21731 343 aa8.96□□□□□ -0.98
LIG1-209ENST00000596104 TYK2P29597 1187 aa8.96□□□□□ -0.98
LIG1-209ENST00000596104 EVI2BP34910 448 aa8.96□□□□□ -0.98
LIG1-209ENST00000596104 KRT20P35900 424 aa8.96□□□□□ -0.98
LIG1-209ENST00000596104 MAGEA12P43365 314 aa8.96□□□□□ -0.98
LIG1-209ENST00000596104 KCNJ5P48544 419 aa8.96□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms