RNA–Protein interactions for RNA: ENST00000595028.1

TRIM28-205, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 486 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-205ENST00000595028 ITM2AO43736 263 aa13.8□□□□□ -0.2
TRIM28-205ENST00000595028 TSPAN2O60636 221 aa13.8□□□□□ -0.2
TRIM28-205ENST00000595028 PEX11AO75192 247 aa13.8□□□□□ -0.2
TRIM28-205ENST00000595028 ERLIN1O75477 346 aa13.8□□□□□ -0.2
TRIM28-205ENST00000595028 REM1O75628 298 aa13.8□□□□□ -0.2
TRIM28-205ENST00000595028 HPNP05981 417 aa13.8□□□□□ -0.2
TRIM28-205ENST00000595028 ACVR2AP27037 513 aa13.8□□□□□ -0.2
TRIM28-205ENST00000595028 HTR1EP28566 365 aa13.8□□□□□ -0.2
TRIM28-205ENST00000595028 PTPN6P29350 595 aa13.8□□□□□ -0.2
TRIM28-205ENST00000595028 IL12BP29460 328 aa13.8□□□□□ -0.2
TRIM28-205ENST00000595028 KRT20P35900 424 aa13.8□□□□□ -0.2
TRIM28-205ENST00000595028 HPCAL1P37235 193 aa13.8□□□□□ -0.2
TRIM28-205ENST00000595028 FRKP42685 505 aaPredicted RBP13.8□□□□□ -0.2
TRIM28-205ENST00000595028 TRPC1P48995 793 aa13.8□□□□□ -0.2
TRIM28-205ENST00000595028 CDK9P50750 372 aaKnown RBP13.8□□□□□ -0.2
TRIM28-205ENST00000595028 EFR3AQ14156 821 aa13.8□□□□□ -0.2
TRIM28-205ENST00000595028 MPP2Q14168 576 aa13.8□□□□□ -0.2
TRIM28-205ENST00000595028 C6orf136Q5SQH8 315 aa13.8□□□□□ -0.2
TRIM28-205ENST00000595028 TIGD3Q6B0B8 471 aa13.8□□□□□ -0.2
TRIM28-205ENST00000595028 TMEM211Q6ICI0 200 aa13.8□□□□□ -0.2
TRIM28-205ENST00000595028 ZNF551Q7Z340 670 aaPredicted RBP13.8□□□□□ -0.2
TRIM28-205ENST00000595028 SLC44A2Q8IWA5 706 aaPredicted RBP13.8□□□□□ -0.2
TRIM28-205ENST00000595028 NEIL3Q8TAT5 605 aa13.8□□□□□ -0.2
TRIM28-205ENST00000595028 SDCCAG3Q96C92 435 aa13.8□□□□□ -0.2
TRIM28-205ENST00000595028 TMCO6Q96DC7 493 aa13.8□□□□□ -0.2
TRIM28-205ENST00000595028 MTERF3Q96E29 417 aa13.8□□□□□ -0.2
TRIM28-205ENST00000595028 ZBED6CLQ96FA7 236 aaPredicted RBP13.8□□□□□ -0.2
TRIM28-205ENST00000595028 ADOQ96SZ5 270 aa13.8□□□□□ -0.2
TRIM28-205ENST00000595028 LMF2Q9BU23 707 aaKnown RBP13.8□□□□□ -0.2
TRIM28-205ENST00000595028 C1orf50Q9BV19 199 aa13.8□□□□□ -0.2
TRIM28-205ENST00000595028 GALNT9Q9HCQ5 603 aa13.8□□□□□ -0.2
TRIM28-205ENST00000595028 SH3BP4Q9P0V3 963 aa13.8□□□□□ -0.2
TRIM28-205ENST00000595028 ACAD8Q9UKU7 415 aa13.8□□□□□ -0.2
TRIM28-205ENST00000595028 OR10H1Q9Y4A9 318 aa13.8□□□□□ -0.2
TRIM28-205ENST00000595028 FAM215AQ9Y5M1 114 aa13.8□□□□□ -0.2
TRIM28-205ENST00000595028 MED12Q93074 2177 aa13.8□□□□□ -0.2
TRIM28-205ENST00000595028 SCAMP2O15127 329 aaKnown RBP13.79□□□□□ -0.2
TRIM28-205ENST00000595028 WDR1O75083 606 aa13.79□□□□□ -0.2
TRIM28-205ENST00000595028 ICOSLGO75144 302 aa13.79□□□□□ -0.2
TRIM28-205ENST00000595028 TRAPPC6AO75865 159 aa13.79□□□□□ -0.2
TRIM28-205ENST00000595028 GPC1P35052 558 aa13.79□□□□□ -0.2
TRIM28-205ENST00000595028 NUP107P57740 925 aa13.79□□□□□ -0.2
TRIM28-205ENST00000595028 ABCE1P61221 599 aaKnown RBP13.79□□□□□ -0.2
TRIM28-205ENST00000595028 PTGR1Q14914 329 aa13.79□□□□□ -0.2
TRIM28-205ENST00000595028 WLSQ5T9L3 541 aa13.79□□□□□ -0.2
TRIM28-205ENST00000595028 ZNF585AQ6P3V2 769 aa13.79□□□□□ -0.2
TRIM28-205ENST00000595028 LARP4Q71RC2 724 aaKnown RBP eCLIP13.79□□□□□ -0.2
TRIM28-205ENST00000595028 R3HCC1LQ7Z5L2 792 aaKnown RBP13.79□□□□□ -0.2
TRIM28-205ENST00000595028 ZNF781Q8N8C0 355 aa13.79□□□□□ -0.2
TRIM28-205ENST00000595028 FNDC5Q8NAU1 212 aa13.79□□□□□ -0.2
TRIM28-205ENST00000595028 OR4N2Q8NGD1 307 aa13.79□□□□□ -0.2
TRIM28-205ENST00000595028 OR1J4Q8NGS1 313 aa13.79□□□□□ -0.2
TRIM28-205ENST00000595028 RNF138Q8WVD3 245 aa13.79□□□□□ -0.2
TRIM28-205ENST00000595028 EFHD2Q96C19 240 aaPredicted RBP13.79□□□□□ -0.2
TRIM28-205ENST00000595028 LURAP1Q96LR2 239 aa13.79□□□□□ -0.2
TRIM28-205ENST00000595028 GNRHR2Q96P88 292 aa13.79□□□□□ -0.2
TRIM28-205ENST00000595028 RUBCNLQ9H714 662 aa13.79□□□□□ -0.2
TRIM28-205ENST00000595028 ZNF395Q9H8N7 513 aaPredicted RBP13.79□□□□□ -0.2
TRIM28-205ENST00000595028 KCNK9Q9NPC2 374 aa13.79□□□□□ -0.2
TRIM28-205ENST00000595028 CHST11Q9NPF2 352 aa13.79□□□□□ -0.2
TRIM28-205ENST00000595028 ACSS1Q9NUB1 689 aaPredicted RBP13.79□□□□□ -0.2
TRIM28-205ENST00000595028 COQ3Q9NZJ6 369 aa13.79□□□□□ -0.2
TRIM28-205ENST00000595028 WIF1Q9Y5W5 379 aa13.79□□□□□ -0.2
TRIM28-205ENST00000595028 SPG11Q96JI7 2443 aa13.79□□□□□ -0.2
TRIM28-205ENST00000595028 C15orf38-AP3S2A0A0A6YYH1 394 aa13.78□□□□□ -0.2
TRIM28-205ENST00000595028 SNUPNO95149 360 aaKnown RBP13.78□□□□□ -0.2
TRIM28-205ENST00000595028 DDX5P17844 614 aaKnown RBP13.78□□□□□ -0.2
TRIM28-205ENST00000595028 BGNP21810 368 aa13.78□□□□□ -0.2
TRIM28-205ENST00000595028 GRK2P25098 689 aa13.78□□□□□ -0.2
TRIM28-205ENST00000595028 RPL3P39023 403 aaKnown RBP13.78□□□□□ -0.2
TRIM28-205ENST00000595028 PNLIPRP2P54317 469 aa13.78□□□□□ -0.2
TRIM28-205ENST00000595028 MRPS22P82650 360 aaKnown RBP13.78□□□□□ -0.2
TRIM28-205ENST00000595028 CRYZQ08257 329 aaKnown RBP13.78□□□□□ -0.2
TRIM28-205ENST00000595028 ZNHIT3Q15649 155 aaPredicted RBP13.78□□□□□ -0.2
TRIM28-205ENST00000595028 PDCD2Q16342 344 aaPredicted RBP13.78□□□□□ -0.2
TRIM28-205ENST00000595028 CYP27C1Q4G0S4 372 aa13.78□□□□□ -0.2
TRIM28-205ENST00000595028 C1orf185Q5T7R7 199 aa13.78□□□□□ -0.2
TRIM28-205ENST00000595028 RTL6Q6ICC9 239 aa13.78□□□□□ -0.2
TRIM28-205ENST00000595028 B3GNT6Q6ZMB0 384 aa13.78□□□□□ -0.2
TRIM28-205ENST00000595028 ACAD11Q709F0 780 aa13.78□□□□□ -0.2
TRIM28-205ENST00000595028 WDR53Q7Z5U6 358 aaPredicted RBP13.78□□□□□ -0.2
TRIM28-205ENST00000595028 ASB5Q8WWX0 329 aa13.78□□□□□ -0.2
TRIM28-205ENST00000595028 RND1Q92730 232 aa13.78□□□□□ -0.2
TRIM28-205ENST00000595028 TUBGCP3Q96CW5 907 aa13.78□□□□□ -0.2
TRIM28-205ENST00000595028 SORT1Q99523 831 aa13.78□□□□□ -0.2
TRIM28-205ENST00000595028 Q9N2J8 555 aa13.78□□□□□ -0.2
TRIM28-205ENST00000595028 ATP6V1HQ9UI12 483 aa13.78□□□□□ -0.2
TRIM28-205ENST00000595028 CBLCQ9ULV8 474 aa13.78□□□□□ -0.2
TRIM28-205ENST00000595028 MAPRE3Q9UPY8 281 aa13.78□□□□□ -0.2
TRIM28-205ENST00000595028 RNF6Q9Y252 685 aa13.78□□□□□ -0.2
TRIM28-205ENST00000595028 RAP2CQ9Y3L5 183 aa13.78□□□□□ -0.2
TRIM28-205ENST00000595028 PCDHGB3Q9Y5G1 929 aa13.78□□□□□ -0.2
TRIM28-205ENST00000595028 INTS1Q8N201 2190 aaKnown RBP13.78□□□□□ -0.2
TRIM28-205ENST00000595028 TTC36A6NLP5 189 aa13.77□□□□□ -0.21
TRIM28-205ENST00000595028 PRPS2P11908 318 aa13.77□□□□□ -0.21
TRIM28-205ENST00000595028 CYP4B1P13584 511 aa13.77□□□□□ -0.21
TRIM28-205ENST00000595028 CHRNB4P30926 498 aa13.77□□□□□ -0.21
TRIM28-205ENST00000595028 MANFP55145 182 aaKnown RBP13.77□□□□□ -0.21
TRIM28-205ENST00000595028 TOMM20Q15388 145 aa13.77□□□□□ -0.21
TRIM28-205ENST00000595028 DECR1Q16698 335 aa13.77□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms