RNA–Protein interactions for RNA: ENST00000593099.5

LIG3-216, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 4,664 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-216ENST00000593099 RNF121Q9H920 327 aa9.25□□□□□ -0.93
LIG3-216ENST00000593099 ERVMER34-1Q9H9K5 563 aa9.25□□□□□ -0.93
LIG3-216ENST00000593099 QPCTLQ9NXS2 382 aa9.25□□□□□ -0.93
LIG3-216ENST00000593099 TRPM6Q9BX84 2022 aa9.25□□□□□ -0.93
LIG3-216ENST00000593099 ARID2Q68CP9 1835 aa9.24□□□□□ -0.93
LIG3-216ENST00000593099 GJE1A6NN92 205 aa9.24□□□□□ -0.93
LIG3-216ENST00000593099 SEC14L5O43304 696 aa9.24□□□□□ -0.93
LIG3-216ENST00000593099 SP9P0CG40 484 aa9.24□□□□□ -0.93
LIG3-216ENST00000593099 IL32P24001 234 aa9.24□□□□□ -0.93
LIG3-216ENST00000593099 RNF144AP50876 292 aaPredicted RBP9.24□□□□□ -0.93
LIG3-216ENST00000593099 RGNQ15493 299 aa9.24□□□□□ -0.93
LIG3-216ENST00000593099 EXT1Q16394 746 aa9.24□□□□□ -0.93
LIG3-216ENST00000593099 GTDC1Q4AE62 458 aa9.24□□□□□ -0.93
LIG3-216ENST00000593099 KLHL26Q53HC5 615 aa9.24□□□□□ -0.93
LIG3-216ENST00000593099 B3GNT6Q6ZMB0 384 aa9.24□□□□□ -0.93
LIG3-216ENST00000593099 HMGN2P46Q86SG4 172 aa9.24□□□□□ -0.93
LIG3-216ENST00000593099 KBTBD2Q8IY47 623 aa9.24□□□□□ -0.93
LIG3-216ENST00000593099 SNX33Q8WV41 574 aa9.24□□□□□ -0.93
LIG3-216ENST00000593099 ZNF578Q96N58 590 aaPredicted RBP9.24□□□□□ -0.93
LIG3-216ENST00000593099 NUDT22Q9BRQ3 303 aa9.24□□□□□ -0.93
LIG3-216ENST00000593099 FKBP14Q9NWM8 211 aa9.24□□□□□ -0.93
LIG3-216ENST00000593099 UCKL1Q9NWZ5 548 aa9.24□□□□□ -0.93
LIG3-216ENST00000593099 ACAD8Q9UKU7 415 aa9.24□□□□□ -0.93
LIG3-216ENST00000593099 PATE3B3GLJ2 98 aa9.24□□□□□ -0.93
LIG3-216ENST00000593099 DSCR3O14972 297 aa9.24□□□□□ -0.93
LIG3-216ENST00000593099 KCNK5O95279 499 aa9.24□□□□□ -0.93
LIG3-216ENST00000593099 ZNF3P17036 446 aa9.24□□□□□ -0.93
LIG3-216ENST00000593099 OR1E2P47887 323 aa9.24□□□□□ -0.93
LIG3-216ENST00000593099 IL20RBQ6UXL0 311 aa9.24□□□□□ -0.93
LIG3-216ENST00000593099 THAP5Q7Z6K1 395 aa9.24□□□□□ -0.93
LIG3-216ENST00000593099 ZZZ3Q8IYH5 903 aa9.24□□□□□ -0.93
LIG3-216ENST00000593099 ABHD11Q8NFV4 315 aa9.24□□□□□ -0.93
LIG3-216ENST00000593099 OR6K6Q8NGW6 343 aa9.24□□□□□ -0.93
LIG3-216ENST00000593099 MS4A6EQ96DS6 147 aa9.24□□□□□ -0.93
LIG3-216ENST00000593099 CENPOQ9BU64 300 aa9.24□□□□□ -0.93
LIG3-216ENST00000593099 EBF2Q9HAK2 575 aa9.24□□□□□ -0.93
LIG3-216ENST00000593099 FSCN3Q9NQT6 498 aa9.24□□□□□ -0.93
LIG3-216ENST00000593099 PNPLA3Q9NST1 481 aa9.24□□□□□ -0.93
LIG3-216ENST00000593099 SHROOM3Q8TF72 1996 aa9.24□□□□□ -0.93
LIG3-216ENST00000593099 PRAMEF33A0A0G2JMD5 474 aa9.24□□□□□ -0.93
LIG3-216ENST00000593099 NPIPA2E9PIF3 369 aa9.24□□□□□ -0.93
LIG3-216ENST00000593099 NPIPA3F8WFD2 350 aa9.24□□□□□ -0.93
LIG3-216ENST00000593099 PDLIM1O00151 329 aa9.24□□□□□ -0.93
LIG3-216ENST00000593099 ARNTLO00327 626 aa9.24□□□□□ -0.93
LIG3-216ENST00000593099 CCRL2O00421 344 aa9.24□□□□□ -0.93
LIG3-216ENST00000593099 PPM1DO15297 605 aa9.24□□□□□ -0.93
LIG3-216ENST00000593099 DIRAS1O95057 198 aa9.24□□□□□ -0.93
LIG3-216ENST00000593099 PAPLNO95428 1278 aa9.24□□□□□ -0.93
LIG3-216ENST00000593099 IGHV4-34P06331 123 aa9.24□□□□□ -0.93
LIG3-216ENST00000593099 SLC6A6P31641 620 aa9.24□□□□□ -0.93
LIG3-216ENST00000593099 PTGER1P34995 402 aa9.24□□□□□ -0.93
LIG3-216ENST00000593099 SLC6A8P48029 635 aa9.24□□□□□ -0.93
LIG3-216ENST00000593099 CLEC12AQ5QGZ9 265 aa9.24□□□□□ -0.93
LIG3-216ENST00000593099 C18orf63Q68DL7 685 aa9.24□□□□□ -0.93
LIG3-216ENST00000593099 ENPP6Q6UWR7 440 aa9.24□□□□□ -0.93
LIG3-216ENST00000593099 GPAT4Q86UL3 456 aa9.24□□□□□ -0.93
LIG3-216ENST00000593099 SLC34A3Q8N130 599 aa9.24□□□□□ -0.93
LIG3-216ENST00000593099 ZNF559Q9BR84 538 aa9.24□□□□□ -0.93
LIG3-216ENST00000593099 UCK2Q9BZX2 261 aa9.24□□□□□ -0.93
LIG3-216ENST00000593099 CBLCQ9ULV8 474 aa9.24□□□□□ -0.93
LIG3-216ENST00000593099 BOKQ9UMX3 212 aaPredicted RBP9.24□□□□□ -0.93
LIG3-216ENST00000593099 H0YIG0 161 aa9.23□□□□□ -0.93
LIG3-216ENST00000593099 FADS2O95864 444 aaKnown RBP9.23□□□□□ -0.93
LIG3-216ENST00000593099 GPX3P22352 226 aa9.23□□□□□ -0.93
LIG3-216ENST00000593099 TACR1P25103 407 aa9.23□□□□□ -0.93
LIG3-216ENST00000593099 SSR4P51571 173 aa9.23□□□□□ -0.93
LIG3-216ENST00000593099 CCL11P51671 97 aa9.23□□□□□ -0.93
LIG3-216ENST00000593099 DAG1Q14118 895 aa9.23□□□□□ -0.93
LIG3-216ENST00000593099 DGCR6Q14129 220 aa9.23□□□□□ -0.93
LIG3-216ENST00000593099 SSX2Q16385 188 aa9.23□□□□□ -0.93
LIG3-216ENST00000593099 CCDC36Q8IYA8 594 aa9.23□□□□□ -0.93
LIG3-216ENST00000593099 ZNF619Q8N2I2 560 aa9.23□□□□□ -0.93
LIG3-216ENST00000593099 STT3BQ8TCJ2 826 aa9.23□□□□□ -0.93
LIG3-216ENST00000593099 BTBD2Q9BX70 525 aa9.23□□□□□ -0.93
LIG3-216ENST00000593099 SEC61A2Q9H9S3 476 aa9.23□□□□□ -0.93
LIG3-216ENST00000593099 ATG4BQ9Y4P1 393 aa9.23□□□□□ -0.93
LIG3-216ENST00000593099 GABREP78334 506 aa9.23□□□□□ -0.93
LIG3-216ENST00000593099 RBPJQ06330 500 aa9.23□□□□□ -0.93
LIG3-216ENST00000593099 TMEM53Q6P2H8 277 aa9.23□□□□□ -0.93
LIG3-216ENST00000593099 ATG14Q6ZNE5 492 aa9.23□□□□□ -0.93
LIG3-216ENST00000593099 Q6ZSR9 355 aa9.23□□□□□ -0.93
LIG3-216ENST00000593099 TM4SF18Q96CE8 201 aa9.23□□□□□ -0.93
LIG3-216ENST00000593099 CLMPQ9H6B4 373 aa9.23□□□□□ -0.93
LIG3-216ENST00000593099 TOR4AQ9NXH8 423 aa9.23□□□□□ -0.93
LIG3-216ENST00000593099 FARSAQ9Y285 508 aaKnown RBP9.23□□□□□ -0.93
LIG3-216ENST00000593099 IDSB3KWA1 339 aa9.23□□□□□ -0.93
LIG3-216ENST00000593099 RNF13O43567 381 aa9.23□□□□□ -0.93
LIG3-216ENST00000593099 SSX5O60225 188 aa9.23□□□□□ -0.93
LIG3-216ENST00000593099 ABCB7O75027 752 aa9.23□□□□□ -0.93
LIG3-216ENST00000593099 TALDO1P37837 337 aa9.23□□□□□ -0.93
LIG3-216ENST00000593099 FAM53BQ14153 422 aa9.23□□□□□ -0.93
LIG3-216ENST00000593099 FXNQ16595 210 aa9.23□□□□□ -0.93
LIG3-216ENST00000593099 SWI5Q1ZZU3 235 aa9.23□□□□□ -0.93
LIG3-216ENST00000593099 ARMC4Q5T2S8 1044 aa9.23□□□□□ -0.93
LIG3-216ENST00000593099 CES4AQ5XG92 561 aa9.23□□□□□ -0.93
LIG3-216ENST00000593099 SLC48A1Q6P1K1 146 aa9.23□□□□□ -0.93
LIG3-216ENST00000593099 CHTF18Q8WVB6 975 aa9.23□□□□□ -0.93
LIG3-216ENST00000593099 SLC46A1Q96NT5 459 aa9.23□□□□□ -0.93
LIG3-216ENST00000593099 PFDN2Q9UHV9 154 aa9.23□□□□□ -0.93
LIG3-216ENST00000593099 ADAM30Q9UKF2 790 aa9.23□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms