RNA–Protein interactions for RNA: ENST00000580751.5

SS18-216, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 547 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-216ENST00000580751 SLC39A3Q9BRY0 314 aa14.34□□□□□ -0.11
SS18-216ENST00000580751 THUMPD3Q9BV44 507 aaKnown RBP14.34□□□□□ -0.11
SS18-216ENST00000580751 ITPAQ9BY32 194 aa14.34□□□□□ -0.11
SS18-216ENST00000580751 LIN28AQ9H9Z2 209 aaKnown RBP14.34□□□□□ -0.11
SS18-216ENST00000580751 FOLH1BQ9HBA9 442 aa14.34□□□□□ -0.11
SS18-216ENST00000580751 SIRT3Q9NTG7 399 aaPredicted RBP14.34□□□□□ -0.11
SS18-216ENST00000580751 ZCCHC3Q9NUD5 404 aaKnown RBP14.34□□□□□ -0.11
SS18-216ENST00000580751 CMTM6Q9NX76 183 aa14.34□□□□□ -0.11
SS18-216ENST00000580751 DTX4Q9Y2E6 619 aa14.34□□□□□ -0.11
SS18-216ENST00000580751 SEC23IPQ9Y6Y8 1000 aaKnown RBP14.34□□□□□ -0.11
SS18-216ENST00000580751 TNRC6AQ8NDV7 1962 aaKnown RBP14.33□□□□□ -0.12
SS18-216ENST00000580751 CFAP46Q8IYW2 2715 aa14.33□□□□□ -0.12
SS18-216ENST00000580751 TTC36A6NLP5 189 aa14.33□□□□□ -0.12
SS18-216ENST00000580751 NME4O00746 187 aa14.33□□□□□ -0.12
SS18-216ENST00000580751 GSNP06396 782 aa14.33□□□□□ -0.12
SS18-216ENST00000580751 BMP2P12643 396 aa14.33□□□□□ -0.12
SS18-216ENST00000580751 DRD5P21918 477 aa14.33□□□□□ -0.12
SS18-216ENST00000580751 HTR1EP28566 365 aa14.33□□□□□ -0.12
SS18-216ENST00000580751 PPICP45877 212 aa14.33□□□□□ -0.12
SS18-216ENST00000580751 CCT3P49368 545 aaKnown RBP14.33□□□□□ -0.12
SS18-216ENST00000580751 CYB561P49447 251 aa14.33□□□□□ -0.12
SS18-216ENST00000580751 HLCSP50747 726 aa14.33□□□□□ -0.12
SS18-216ENST00000580751 NR0B1P51843 470 aaKnown RBP14.33□□□□□ -0.12
SS18-216ENST00000580751 OC90Q02509 493 aaPredicted RBP14.33□□□□□ -0.12
SS18-216ENST00000580751 TUBA3CQ13748 450 aa14.33□□□□□ -0.12
SS18-216ENST00000580751 TRIM25Q14258 630 aaKnown RBP14.33□□□□□ -0.12
SS18-216ENST00000580751 ZNHIT3Q15649 155 aaPredicted RBP14.33□□□□□ -0.12
SS18-216ENST00000580751 SAXO2Q658L1 398 aa14.33□□□□□ -0.12
SS18-216ENST00000580751 ERICH5Q6P6B1 374 aa14.33□□□□□ -0.12
SS18-216ENST00000580751 ZCCHC12Q6PEW1 402 aa14.33□□□□□ -0.12
SS18-216ENST00000580751 TUBA3EQ6PEY2 450 aa14.33□□□□□ -0.12
SS18-216ENST00000580751 OPN5Q6U736 354 aa14.33□□□□□ -0.12
SS18-216ENST00000580751 C16orf47Q6ZP98 133 aaPredicted RBP14.33□□□□□ -0.12
SS18-216ENST00000580751 NET1Q7Z628 596 aaPredicted RBP14.33□□□□□ -0.12
SS18-216ENST00000580751 PTRH1Q86Y79 214 aaKnown RBP14.33□□□□□ -0.12
SS18-216ENST00000580751 DND1Q8IYX4 353 aaKnown RBP14.33□□□□□ -0.12
SS18-216ENST00000580751 NUP43Q8NFH3 380 aa14.33□□□□□ -0.12
SS18-216ENST00000580751 UTP4Q969X6 686 aaKnown RBP14.33□□□□□ -0.12
SS18-216ENST00000580751 LCORQ96JN0 433 aaPredicted RBP14.33□□□□□ -0.12
SS18-216ENST00000580751 SLC35A5Q9BS91 424 aa14.33□□□□□ -0.12
SS18-216ENST00000580751 TRIM4Q9C037 500 aa14.33□□□□□ -0.12
SS18-216ENST00000580751 ALG2Q9H553 416 aa14.33□□□□□ -0.12
SS18-216ENST00000580751 CXorf36Q9H7Y0 433 aa14.33□□□□□ -0.12
SS18-216ENST00000580751 SLC6A13Q9NSD5 602 aa14.33□□□□□ -0.12
SS18-216ENST00000580751 PLA2G3Q9NZ20 509 aa14.33□□□□□ -0.12
SS18-216ENST00000580751 SLC7A8Q9UHI5 535 aa14.33□□□□□ -0.12
SS18-216ENST00000580751 GPR55Q9Y2T6 319 aaPredicted RBP14.33□□□□□ -0.12
SS18-216ENST00000580751 TRAV17A0A0B4J275 112 aa14.32□□□□□ -0.12
SS18-216ENST00000580751 RNF103-CHMP3A0A140T963 221 aa14.32□□□□□ -0.12
SS18-216ENST00000580751 PRORSD1PA6NEY8 169 aa14.32□□□□□ -0.12
SS18-216ENST00000580751 FRG2CA6NGY1 282 aa14.32□□□□□ -0.12
SS18-216ENST00000580751 A8MVJ9 347 aa14.32□□□□□ -0.12
SS18-216ENST00000580751 STAMBPO95630 424 aa14.32□□□□□ -0.12
SS18-216ENST00000580751 CHI3L1P36222 383 aaPredicted RBP14.32□□□□□ -0.12
SS18-216ENST00000580751 TMED10P49755 219 aaKnown RBP14.32□□□□□ -0.12
SS18-216ENST00000580751 TNFSF10P50591 281 aa14.32□□□□□ -0.12
SS18-216ENST00000580751 PRKAG1P54619 331 aa14.32□□□□□ -0.12
SS18-216ENST00000580751 LIPEQ05469 1076 aa14.32□□□□□ -0.12
SS18-216ENST00000580751 RBBP4Q09028 425 aa14.32□□□□□ -0.12
SS18-216ENST00000580751 KLRB1Q12918 225 aa14.32□□□□□ -0.12
SS18-216ENST00000580751 GAB1Q13480 694 aa14.32□□□□□ -0.12
SS18-216ENST00000580751 TP53BP2Q13625 1128 aa14.32□□□□□ -0.12
SS18-216ENST00000580751 CEACAM7Q14002 265 aa14.32□□□□□ -0.12
SS18-216ENST00000580751 RABL3Q5HYI8 236 aa14.32□□□□□ -0.12
SS18-216ENST00000580751 DNAJC14Q6Y2X3 702 aaPredicted RBP14.32□□□□□ -0.12
SS18-216ENST00000580751 CALHM3Q86XJ0 350 aa14.32□□□□□ -0.12
SS18-216ENST00000580751 SLC30A8Q8IWU4 369 aa14.32□□□□□ -0.12
SS18-216ENST00000580751 METTL25Q8N6Q8 603 aa14.32□□□□□ -0.12
SS18-216ENST00000580751 CDRT4Q8N9R6 151 aa14.32□□□□□ -0.12
SS18-216ENST00000580751 MIPOL1Q8TD10 442 aa14.32□□□□□ -0.12
SS18-216ENST00000580751 SLC39A7Q92504 469 aa14.32□□□□□ -0.12
SS18-216ENST00000580751 HSPBAP1Q96EW2 488 aa14.32□□□□□ -0.12
SS18-216ENST00000580751 REXO5Q96IC2 774 aaKnown RBP14.32□□□□□ -0.12
SS18-216ENST00000580751 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP14.32□□□□□ -0.12
SS18-216ENST00000580751 NXF5Q9H1B4 397 aaKnown RBP14.32□□□□□ -0.12
SS18-216ENST00000580751 TRIM45Q9H8W5 580 aaPredicted RBP14.32□□□□□ -0.12
SS18-216ENST00000580751 EQTNQ9NQ60 294 aa14.32□□□□□ -0.12
SS18-216ENST00000580751 HPF1Q9NWY4 346 aa14.32□□□□□ -0.12
SS18-216ENST00000580751 LRFN1Q9P244 771 aa14.32□□□□□ -0.12
SS18-216ENST00000580751 B3GNT3Q9Y2A9 372 aa14.32□□□□□ -0.12
SS18-216ENST00000580751 RRP15Q9Y3B9 282 aaKnown RBP14.32□□□□□ -0.12
SS18-216ENST00000580751 COL6A6A6NMZ7 2263 aa14.31□□□□□ -0.12
SS18-216ENST00000580751 GIMAP1-GIMAP5A0A087WTJ2 511 aa14.31□□□□□ -0.12
SS18-216ENST00000580751 DUXAA6NLW8 204 aa14.31□□□□□ -0.12
SS18-216ENST00000580751 FAM220BPB1ANY3 271 aa14.31□□□□□ -0.12
SS18-216ENST00000580751 TO15178 435 aa14.31□□□□□ -0.12
SS18-216ENST00000580751 ASNA1O43681 348 aa14.31□□□□□ -0.12
SS18-216ENST00000580751 NADKO95544 446 aaPredicted RBP14.31□□□□□ -0.12
SS18-216ENST00000580751 AGR2O95994 175 aa14.31□□□□□ -0.12
SS18-216ENST00000580751 F10P00742 488 aa14.31□□□□□ -0.12
SS18-216ENST00000580751 CD96P40200 585 aa14.31□□□□□ -0.12
SS18-216ENST00000580751 SOX3P41225 446 aa14.31□□□□□ -0.12
SS18-216ENST00000580751 CD97P48960 835 aa14.31□□□□□ -0.12
SS18-216ENST00000580751 PRIM2P49643 509 aa14.31□□□□□ -0.12
SS18-216ENST00000580751 GSK3BP49841 420 aa14.31□□□□□ -0.12
SS18-216ENST00000580751 MTPNP58546 118 aa14.31□□□□□ -0.12
SS18-216ENST00000580751 VEZF1Q14119 521 aa14.31□□□□□ -0.12
SS18-216ENST00000580751 RGNQ15493 299 aa14.31□□□□□ -0.12
SS18-216ENST00000580751 OR1C1Q15619 314 aa14.31□□□□□ -0.12
SS18-216ENST00000580751 NNATQ16517 81 aa14.31□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms