RNA–Protein interactions for RNA: ENST00000579558.5

SHMT1-206, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,077 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-206ENST00000579558 ZNHIT3Q15649 155 aaPredicted RBP21.83■■□□□ 1.09
SHMT1-206ENST00000579558 ZNF781Q8N8C0 355 aa21.83■■□□□ 1.09
SHMT1-206ENST00000579558 RND1Q92730 232 aa21.83■■□□□ 1.09
SHMT1-206ENST00000579558 EFHD2Q96C19 240 aaPredicted RBP21.83■■□□□ 1.09
SHMT1-206ENST00000579558 PAIP2Q9BPZ3 127 aaKnown RBP21.83■■□□□ 1.09
SHMT1-206ENST00000579558 CHST11Q9NPF2 352 aa21.83■■□□□ 1.09
SHMT1-206ENST00000579558 ALKBH4Q9NXW9 302 aa21.83■■□□□ 1.09
SHMT1-206ENST00000579558 MAPRE3Q9UPY8 281 aa21.83■■□□□ 1.09
SHMT1-206ENST00000579558 PHF3Q92576 2039 aaKnown RBP21.82■■□□□ 1.08
SHMT1-206ENST00000579558 C15orf38-AP3S2A0A0A6YYH1 394 aa21.82■■□□□ 1.08
SHMT1-206ENST00000579558 SCAMP2O15127 329 aaKnown RBP21.82■■□□□ 1.08
SHMT1-206ENST00000579558 WDR1O75083 606 aa21.82■■□□□ 1.08
SHMT1-206ENST00000579558 BGNP21810 368 aa21.82■■□□□ 1.08
SHMT1-206ENST00000579558 GRK2P25098 689 aa21.82■■□□□ 1.08
SHMT1-206ENST00000579558 RPL3P39023 403 aaKnown RBP21.82■■□□□ 1.08
SHMT1-206ENST00000579558 FRKP42685 505 aaPredicted RBP21.82■■□□□ 1.08
SHMT1-206ENST00000579558 PNLIPRP2P54317 469 aa21.82■■□□□ 1.08
SHMT1-206ENST00000579558 NUP107P57740 925 aa21.82■■□□□ 1.08
SHMT1-206ENST00000579558 MRPS22P82650 360 aaKnown RBP21.82■■□□□ 1.08
SHMT1-206ENST00000579558 PMPCAQ10713 525 aa21.82■■□□□ 1.08
SHMT1-206ENST00000579558 PDCD2Q16342 344 aaPredicted RBP21.82■■□□□ 1.08
SHMT1-206ENST00000579558 CYP27C1Q4G0S4 372 aa21.82■■□□□ 1.08
SHMT1-206ENST00000579558 IL23RQ5VWK5 629 aa21.82■■□□□ 1.08
SHMT1-206ENST00000579558 ACAD11Q709F0 780 aa21.82■■□□□ 1.08
SHMT1-206ENST00000579558 WDR53Q7Z5U6 358 aaPredicted RBP21.82■■□□□ 1.08
SHMT1-206ENST00000579558 ANKRD42Q8N9B4 389 aa21.82■■□□□ 1.08
SHMT1-206ENST00000579558 CA5BP1Q8WTZ4 195 aa21.82■■□□□ 1.08
SHMT1-206ENST00000579558 Q9N2J8 555 aa21.82■■□□□ 1.08
SHMT1-206ENST00000579558 EQTNQ9NQ60 294 aa21.82■■□□□ 1.08
SHMT1-206ENST00000579558 ACSS1Q9NUB1 689 aaPredicted RBP21.82■■□□□ 1.08
SHMT1-206ENST00000579558 ATP6V1HQ9UI12 483 aa21.82■■□□□ 1.08
SHMT1-206ENST00000579558 RAP2CQ9Y3L5 183 aa21.82■■□□□ 1.08
SHMT1-206ENST00000579558 HNRNPRO43390 633 aaKnown RBP21.81■■□□□ 1.08
SHMT1-206ENST00000579558 PRPS2P11908 318 aa21.81■■□□□ 1.08
SHMT1-206ENST00000579558 SLC1A6P48664 564 aa21.81■■□□□ 1.08
SHMT1-206ENST00000579558 PTGR1Q14914 329 aa21.81■■□□□ 1.08
SHMT1-206ENST00000579558 BEND6Q5SZJ8 279 aaPredicted RBP21.81■■□□□ 1.08
SHMT1-206ENST00000579558 HHATQ5VTY9 493 aa21.81■■□□□ 1.08
SHMT1-206ENST00000579558 B3GNT6Q6ZMB0 384 aa21.81■■□□□ 1.08
SHMT1-206ENST00000579558 LMF2Q9BU23 707 aaKnown RBP21.81■■□□□ 1.08
SHMT1-206ENST00000579558 C20orf27Q9GZN8 174 aa21.81■■□□□ 1.08
SHMT1-206ENST00000579558 SERHLQ9NQF3 203 aa21.81■■□□□ 1.08
SHMT1-206ENST00000579558 CBLCQ9ULV8 474 aa21.81■■□□□ 1.08
SHMT1-206ENST00000579558 EPB41L3Q9Y2J2 1087 aaPredicted RBP21.81■■□□□ 1.08
SHMT1-206ENST00000579558 FAM215AQ9Y5M1 114 aa21.81■■□□□ 1.08
SHMT1-206ENST00000579558 WIF1Q9Y5W5 379 aa21.81■■□□□ 1.08
SHMT1-206ENST00000579558 SNUPNO95149 360 aaKnown RBP21.8■■□□□ 1.08
SHMT1-206ENST00000579558 CYP4B1P13584 511 aa21.8■■□□□ 1.08
SHMT1-206ENST00000579558 GABRA1P14867 456 aa21.8■■□□□ 1.08
SHMT1-206ENST00000579558 EFNA1P20827 205 aaPredicted RBP21.8■■□□□ 1.08
SHMT1-206ENST00000579558 PRKAG1P54619 331 aa21.8■■□□□ 1.08
SHMT1-206ENST00000579558 STX3Q13277 289 aa21.8■■□□□ 1.08
SHMT1-206ENST00000579558 GAB1Q13480 694 aa21.8■■□□□ 1.08
SHMT1-206ENST00000579558 DECR1Q16698 335 aa21.8■■□□□ 1.08
SHMT1-206ENST00000579558 EIPR1Q53HC9 387 aa21.8■■□□□ 1.08
SHMT1-206ENST00000579558 WIPI1Q5MNZ9 446 aaPredicted RBP21.8■■□□□ 1.08
SHMT1-206ENST00000579558 C1orf185Q5T7R7 199 aa21.8■■□□□ 1.08
SHMT1-206ENST00000579558 RTL6Q6ICC9 239 aa21.8■■□□□ 1.08
SHMT1-206ENST00000579558 SZRD1Q7Z422 152 aa21.8■■□□□ 1.08
SHMT1-206ENST00000579558 OR7A2PQ8NGA2 310 aa21.8■■□□□ 1.08
SHMT1-206ENST00000579558 ASB5Q8WWX0 329 aa21.8■■□□□ 1.08
SHMT1-206ENST00000579558 MARVELD3Q96A59 401 aa21.8■■□□□ 1.08
SHMT1-206ENST00000579558 PPP1R36Q96LQ0 422 aa21.8■■□□□ 1.08
SHMT1-206ENST00000579558 TTYH2Q9BSA4 534 aa21.8■■□□□ 1.08
SHMT1-206ENST00000579558 RNF6Q9Y252 685 aa21.8■■□□□ 1.08
SHMT1-206ENST00000579558 EIF3LQ9Y262 564 aaKnown RBP21.8■■□□□ 1.08
SHMT1-206ENST00000579558 SLC6A5Q9Y345 797 aa21.8■■□□□ 1.08
SHMT1-206ENST00000579558 CACNA1CQ13936 2221 aa21.8■■□□□ 1.08
SHMT1-206ENST00000579558 TTC36A6NLP5 189 aa21.79■■□□□ 1.08
SHMT1-206ENST00000579558 HOXD4P09016 255 aaPredicted RBP21.79■■□□□ 1.08
SHMT1-206ENST00000579558 CHRNB4P30926 498 aa21.79■■□□□ 1.08
SHMT1-206ENST00000579558 CRYZQ08257 329 aaKnown RBP21.79■■□□□ 1.08
SHMT1-206ENST00000579558 MAD2L1Q13257 205 aaPredicted RBP21.79■■□□□ 1.08
SHMT1-206ENST00000579558 WDSUB1Q8N9V3 476 aa21.79■■□□□ 1.08
SHMT1-206ENST00000579558 FAM83FQ8NEG4 500 aaPredicted RBP21.79■■□□□ 1.08
SHMT1-206ENST00000579558 NUP43Q8NFH3 380 aa21.79■■□□□ 1.08
SHMT1-206ENST00000579558 CEP70Q8NHQ1 597 aa21.79■■□□□ 1.08
SHMT1-206ENST00000579558 SORT1Q99523 831 aa21.79■■□□□ 1.08
SHMT1-206ENST00000579558 C3orf14Q9HBI5 128 aa21.79■■□□□ 1.08
SHMT1-206ENST00000579558 MRTO4Q9UKD2 239 aaKnown RBP21.79■■□□□ 1.08
SHMT1-206ENST00000579558 PCDHGB3Q9Y5G1 929 aa21.79■■□□□ 1.08
SHMT1-206ENST00000579558 TMEM120BA0PK00 339 aa21.78■■□□□ 1.08
SHMT1-206ENST00000579558 CBR3O75828 277 aa21.78■■□□□ 1.08
SHMT1-206ENST00000579558 GLI4P10075 376 aa21.78■■□□□ 1.08
SHMT1-206ENST00000579558 GABRA3P34903 492 aa21.78■■□□□ 1.08
SHMT1-206ENST00000579558 RPL14P50914 215 aaKnown RBP21.78■■□□□ 1.08
SHMT1-206ENST00000579558 CRYBG3Q68DQ2 2970 aa21.78■■□□□ 1.08
SHMT1-206ENST00000579558 YRDCQ86U90 279 aaKnown RBP21.78■■□□□ 1.08
SHMT1-206ENST00000579558 PLCZ1Q86YW0 608 aa21.78■■□□□ 1.08
SHMT1-206ENST00000579558 CCDC71Q8IV32 467 aaPredicted RBP21.78■■□□□ 1.08
SHMT1-206ENST00000579558 ULK2Q8IYT8 1036 aa21.78■■□□□ 1.08
SHMT1-206ENST00000579558 KIRREL3Q8IZU9 778 aa21.78■■□□□ 1.08
SHMT1-206ENST00000579558 OR10Q1Q8NGQ4 319 aa21.78■■□□□ 1.08
SHMT1-206ENST00000579558 RNF138Q8WVD3 245 aa21.78■■□□□ 1.08
SHMT1-206ENST00000579558 MS4A4EQ96PG1 132 aa21.78■■□□□ 1.08
SHMT1-206ENST00000579558 TIMP4Q99727 224 aa21.78■■□□□ 1.08
SHMT1-206ENST00000579558 CACNA1DQ01668 2161 aa21.77■■□□□ 1.08
SHMT1-206ENST00000579558 A0A1W2PRB8 838 aa21.77■■□□□ 1.08
SHMT1-206ENST00000579558 EMC8O43402 210 aa21.77■■□□□ 1.08
SHMT1-206ENST00000579558 LAMP1P11279 417 aa21.77■■□□□ 1.08
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms