RNA–Protein interactions for RNA: ENST00000579061.5

SS18-212, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 646 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-212ENST00000579061 OR5M9Q8NGP3 310 aa13.56□□□□□ -0.24
SS18-212ENST00000579061 CEP70Q8NHQ1 597 aa13.56□□□□□ -0.24
SS18-212ENST00000579061 RND1Q92730 232 aa13.56□□□□□ -0.24
SS18-212ENST00000579061 SDCCAG3Q96C92 435 aa13.56□□□□□ -0.24
SS18-212ENST00000579061 C3orf30Q96M34 536 aa13.56□□□□□ -0.24
SS18-212ENST00000579061 GNRHR2Q96P88 292 aa13.56□□□□□ -0.24
SS18-212ENST00000579061 ADOQ96SZ5 270 aa13.56□□□□□ -0.24
SS18-212ENST00000579061 LMF2Q9BU23 707 aaKnown RBP13.56□□□□□ -0.24
SS18-212ENST00000579061 RUBCNLQ9H714 662 aa13.56□□□□□ -0.24
SS18-212ENST00000579061 SH3BP4Q9P0V3 963 aa13.56□□□□□ -0.24
SS18-212ENST00000579061 RAP2CQ9Y3L5 183 aa13.56□□□□□ -0.24
SS18-212ENST00000579061 NOTCH2Q04721 2471 aa13.56□□□□□ -0.24
SS18-212ENST00000579061 WDR91A4D1P6 747 aa13.55□□□□□ -0.24
SS18-212ENST00000579061 GNB5O14775 395 aa13.55□□□□□ -0.24
SS18-212ENST00000579061 SCAMP2O15127 329 aaKnown RBP13.55□□□□□ -0.24
SS18-212ENST00000579061 ITM2AO43736 263 aa13.55□□□□□ -0.24
SS18-212ENST00000579061 NME6O75414 186 aaPredicted RBP13.55□□□□□ -0.24
SS18-212ENST00000579061 SKAP2O75563 359 aaPredicted RBP13.55□□□□□ -0.24
SS18-212ENST00000579061 CBR3O75828 277 aa13.55□□□□□ -0.24
SS18-212ENST00000579061 TRAPPC6AO75865 159 aa13.55□□□□□ -0.24
SS18-212ENST00000579061 GRNP28799 593 aaKnown RBP13.55□□□□□ -0.24
SS18-212ENST00000579061 CHRNB4P30926 498 aa13.55□□□□□ -0.24
SS18-212ENST00000579061 GPC1P35052 558 aa13.55□□□□□ -0.24
SS18-212ENST00000579061 HPCAL1P37235 193 aa13.55□□□□□ -0.24
SS18-212ENST00000579061 MANFP55145 182 aaKnown RBP13.55□□□□□ -0.24
SS18-212ENST00000579061 MPP2Q14168 576 aa13.55□□□□□ -0.24
SS18-212ENST00000579061 MLC1Q15049 377 aa13.55□□□□□ -0.24
SS18-212ENST00000579061 DECR1Q16698 335 aa13.55□□□□□ -0.24
SS18-212ENST00000579061 NHSL2Q5HYW2 709 aa13.55□□□□□ -0.24
SS18-212ENST00000579061 CES4AQ5XG92 561 aa13.55□□□□□ -0.24
SS18-212ENST00000579061 ANKRD26P1Q6NSI1 321 aa13.55□□□□□ -0.24
SS18-212ENST00000579061 ZNF585AQ6P3V2 769 aa13.55□□□□□ -0.24
SS18-212ENST00000579061 B3GNT6Q6ZMB0 384 aa13.55□□□□□ -0.24
SS18-212ENST00000579061 FNDC5Q8NAU1 212 aa13.55□□□□□ -0.24
SS18-212ENST00000579061 CLHC1Q8NHS4 586 aa13.55□□□□□ -0.24
SS18-212ENST00000579061 CA5BP1Q8WTZ4 195 aa13.55□□□□□ -0.24
SS18-212ENST00000579061 HOXB13Q92826 284 aaPredicted RBP13.55□□□□□ -0.24
SS18-212ENST00000579061 CIDECQ96AQ7 238 aaPredicted RBP13.55□□□□□ -0.24
SS18-212ENST00000579061 C3orf14Q9HBI5 128 aa13.55□□□□□ -0.24
SS18-212ENST00000579061 Q9N2J8 555 aa13.55□□□□□ -0.24
SS18-212ENST00000579061 KCNK9Q9NPC2 374 aa13.55□□□□□ -0.24
SS18-212ENST00000579061 HAO1Q9UJM8 370 aa13.55□□□□□ -0.24
SS18-212ENST00000579061 MRTO4Q9UKD2 239 aaKnown RBP13.55□□□□□ -0.24
SS18-212ENST00000579061 CBLCQ9ULV8 474 aa13.55□□□□□ -0.24
SS18-212ENST00000579061 FAM215AQ9Y5M1 114 aa13.55□□□□□ -0.24
SS18-212ENST00000579061 AHRRA9YTQ3 701 aa13.54□□□□□ -0.24
SS18-212ENST00000579061 MAP3K8P41279 467 aa13.54□□□□□ -0.24
SS18-212ENST00000579061 SLC1A6P48664 564 aa13.54□□□□□ -0.24
SS18-212ENST00000579061 TRPC1P48995 793 aa13.54□□□□□ -0.24
SS18-212ENST00000579061 SLC18A1P54219 525 aa13.54□□□□□ -0.24
SS18-212ENST00000579061 PSMD4P55036 377 aaKnown RBP13.54□□□□□ -0.24
SS18-212ENST00000579061 NUP107P57740 925 aa13.54□□□□□ -0.24
SS18-212ENST00000579061 EMX2Q04743 252 aa13.54□□□□□ -0.24
SS18-212ENST00000579061 CRYZQ08257 329 aaKnown RBP13.54□□□□□ -0.24
SS18-212ENST00000579061 PMPCAQ10713 525 aa13.54□□□□□ -0.24
SS18-212ENST00000579061 HSPB3Q12988 150 aa13.54□□□□□ -0.24
SS18-212ENST00000579061 GAB1Q13480 694 aa13.54□□□□□ -0.24
SS18-212ENST00000579061 CDSNQ15517 529 aa13.54□□□□□ -0.24
SS18-212ENST00000579061 BEND6Q5SZJ8 279 aaPredicted RBP13.54□□□□□ -0.24
SS18-212ENST00000579061 C1orf185Q5T7R7 199 aa13.54□□□□□ -0.24
SS18-212ENST00000579061 IL23RQ5VWK5 629 aa13.54□□□□□ -0.24
SS18-212ENST00000579061 VASNQ6EMK4 673 aa13.54□□□□□ -0.24
SS18-212ENST00000579061 RTL6Q6ICC9 239 aa13.54□□□□□ -0.24
SS18-212ENST00000579061 PLCZ1Q86YW0 608 aa13.54□□□□□ -0.24
SS18-212ENST00000579061 PM20D2Q8IYS1 436 aa13.54□□□□□ -0.24
SS18-212ENST00000579061 RPRMLQ8N4K4 120 aa13.54□□□□□ -0.24
SS18-212ENST00000579061 WDSUB1Q8N9V3 476 aa13.54□□□□□ -0.24
SS18-212ENST00000579061 FAM83FQ8NEG4 500 aaPredicted RBP13.54□□□□□ -0.24
SS18-212ENST00000579061 OR4N2Q8NGD1 307 aa13.54□□□□□ -0.24
SS18-212ENST00000579061 TUBGCP3Q96CW5 907 aa13.54□□□□□ -0.24
SS18-212ENST00000579061 TTYH2Q9BSA4 534 aa13.54□□□□□ -0.24
SS18-212ENST00000579061 GALNT9Q9HCQ5 603 aa13.54□□□□□ -0.24
SS18-212ENST00000579061 ATAD3AQ9NVI7 634 aa13.54□□□□□ -0.24
SS18-212ENST00000579061 ASIC5Q9NY37 505 aa13.54□□□□□ -0.24
SS18-212ENST00000579061 TNFRSF10DQ9UBN6 386 aa13.54□□□□□ -0.24
SS18-212ENST00000579061 GIMAP2Q9UG22 337 aa13.54□□□□□ -0.24
SS18-212ENST00000579061 MAPRE3Q9UPY8 281 aa13.54□□□□□ -0.24
SS18-212ENST00000579061 RNF6Q9Y252 685 aa13.54□□□□□ -0.24
SS18-212ENST00000579061 EIF3LQ9Y262 564 aaKnown RBP13.54□□□□□ -0.24
SS18-212ENST00000579061 MRPS18CQ9Y3D5 142 aaKnown RBP13.54□□□□□ -0.24
SS18-212ENST00000579061 WIF1Q9Y5W5 379 aa13.54□□□□□ -0.24
SS18-212ENST00000579061 HCFC1P51610 2035 aa13.54□□□□□ -0.24
SS18-212ENST00000579061 INTS1Q8N201 2190 aaKnown RBP13.54□□□□□ -0.24
SS18-212ENST00000579061 C15orf38-AP3S2A0A0A6YYH1 394 aa13.53□□□□□ -0.24
SS18-212ENST00000579061 FAM47E-STBD1D6RA91 191 aa13.53□□□□□ -0.24
SS18-212ENST00000579061 EMC8O43402 210 aa13.53□□□□□ -0.24
SS18-212ENST00000579061 IL33O95760 270 aa13.53□□□□□ -0.24
SS18-212ENST00000579061 GLI4P10075 376 aa13.53□□□□□ -0.24
SS18-212ENST00000579061 CYP4B1P13584 511 aa13.53□□□□□ -0.24
SS18-212ENST00000579061 PRPS1L1P21108 318 aa13.53□□□□□ -0.24
SS18-212ENST00000579061 BGNP21810 368 aa13.53□□□□□ -0.24
SS18-212ENST00000579061 GCKP35557 465 aa13.53□□□□□ -0.24
SS18-212ENST00000579061 RPL14P50914 215 aaKnown RBP13.53□□□□□ -0.24
SS18-212ENST00000579061 GAS1P54826 345 aa13.53□□□□□ -0.24
SS18-212ENST00000579061 C21orf58P58505 322 aa13.53□□□□□ -0.24
SS18-212ENST00000579061 STX3Q13277 289 aa13.53□□□□□ -0.24
SS18-212ENST00000579061 TOMM20Q15388 145 aa13.53□□□□□ -0.24
SS18-212ENST00000579061 SF3B4Q15427 424 aaKnown RBP eCLIP13.53□□□□□ -0.244e-8■■■□□ 18.5
SS18-212ENST00000579061 VPS26BQ4G0F5 336 aa13.53□□□□□ -0.24
SS18-212ENST00000579061 ZCCHC12Q6PEW1 402 aa13.53□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms