RNA–Protein interactions for RNA: ENST00000578954.5

SS18-211, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 756 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-211ENST00000578954 SYPL1Q16563 259 aa14.94□□□□□ -0.02
SS18-211ENST00000578954 CYP27C1Q4G0S4 372 aa14.94□□□□□ -0.02
SS18-211ENST00000578954 CRB2Q5IJ48 1285 aa14.94□□□□□ -0.02
SS18-211ENST00000578954 DCST2Q5T1A1 773 aa14.94□□□□□ -0.02
SS18-211ENST00000578954 AQP12AQ8IXF9 295 aa14.94□□□□□ -0.02
SS18-211ENST00000578954 ARMC10Q8N2F6 343 aa14.94□□□□□ -0.02
SS18-211ENST00000578954 GOLM1Q8NBJ4 401 aa14.94□□□□□ -0.02
SS18-211ENST00000578954 BBS10Q8TAM1 723 aa14.94□□□□□ -0.02
SS18-211ENST00000578954 GPR151Q8TDV0 419 aa14.94□□□□□ -0.02
SS18-211ENST00000578954 FIG4Q92562 907 aa14.94□□□□□ -0.02
SS18-211ENST00000578954 PIK3R3Q92569 461 aa14.94□□□□□ -0.02
SS18-211ENST00000578954 FGF11Q92914 225 aa14.94□□□□□ -0.02
SS18-211ENST00000578954 SDF2Q99470 211 aa14.94□□□□□ -0.02
SS18-211ENST00000578954 TRIM15Q9C019 465 aa14.94□□□□□ -0.02
SS18-211ENST00000578954 SAP130Q9H0E3 1048 aa14.94□□□□□ -0.02
SS18-211ENST00000578954 NXF5Q9H1B4 397 aaKnown RBP14.94□□□□□ -0.02
SS18-211ENST00000578954 SLC38A1Q9H2H9 487 aa14.94□□□□□ -0.02
SS18-211ENST00000578954 RUBCNLQ9H714 662 aa14.94□□□□□ -0.02
SS18-211ENST00000578954 OLAHQ9NV23 265 aa14.94□□□□□ -0.02
SS18-211ENST00000578954 A0A0G2JPF8 293 aa14.93□□□□□ -0.02
SS18-211ENST00000578954 TCRBV5S2A0A599 114 aa14.93□□□□□ -0.02
SS18-211ENST00000578954 TCRBV3S1A0A5B6 114 aa14.93□□□□□ -0.02
SS18-211ENST00000578954 GXYLT2A0PJZ3 443 aa14.93□□□□□ -0.02
SS18-211ENST00000578954 TMEM200CA6NKL6 621 aa14.93□□□□□ -0.02
SS18-211ENST00000578954 HNRNPCL2B2RXH8 293 aa14.93□□□□□ -0.02
SS18-211ENST00000578954 HNRNPCL3B7ZW38 293 aa14.93□□□□□ -0.02
SS18-211ENST00000578954 SLC28A2O43868 658 aa14.93□□□□□ -0.02
SS18-211ENST00000578954 GMNNO75496 209 aa14.93□□□□□ -0.02
SS18-211ENST00000578954 ZFAND5O76080 213 aa14.93□□□□□ -0.02
SS18-211ENST00000578954 KCNK2O95069 426 aa14.93□□□□□ -0.02
SS18-211ENST00000578954 ZIC2O95409 532 aaPredicted RBP14.93□□□□□ -0.02
SS18-211ENST00000578954 STAMBPO95630 424 aa14.93□□□□□ -0.02
SS18-211ENST00000578954 HNRNPCL4P0DMR1 293 aa14.93□□□□□ -0.02
SS18-211ENST00000578954 ICAM2P13598 275 aa14.93□□□□□ -0.02
SS18-211ENST00000578954 ETS2P15036 469 aa14.93□□□□□ -0.02
SS18-211ENST00000578954 KDELR2P33947 212 aa14.93□□□□□ -0.02
SS18-211ENST00000578954 SOX11P35716 441 aa14.93□□□□□ -0.02
SS18-211ENST00000578954 MRPS22P82650 360 aaKnown RBP14.93□□□□□ -0.02
SS18-211ENST00000578954 CCNIQ14094 377 aa14.93□□□□□ -0.02
SS18-211ENST00000578954 KPNB1Q14974 876 aaKnown RBP14.93□□□□□ -0.02
SS18-211ENST00000578954 BTBD16Q32M84 506 aa14.93□□□□□ -0.02
SS18-211ENST00000578954 FRRS1Q6ZNA5 592 aa14.93□□□□□ -0.02
SS18-211ENST00000578954 C16orf62Q7Z3J2 963 aa14.93□□□□□ -0.02
SS18-211ENST00000578954 PATL1Q86TB9 770 aaKnown RBP14.93□□□□□ -0.02
SS18-211ENST00000578954 SLC44A2Q8IWA5 706 aaPredicted RBP14.93□□□□□ -0.02
SS18-211ENST00000578954 EID3Q8N140 333 aa14.93□□□□□ -0.02
SS18-211ENST00000578954 AMER2Q8N7J2 671 aa14.93□□□□□ -0.02
SS18-211ENST00000578954 BHLHE22Q8NFJ8 381 aaPredicted RBP14.93□□□□□ -0.02
SS18-211ENST00000578954 OR5L2Q8NGL0 311 aa14.93□□□□□ -0.02
SS18-211ENST00000578954 PMM1Q92871 262 aa14.93□□□□□ -0.02
SS18-211ENST00000578954 POP5Q969H6 163 aaKnown RBP14.93□□□□□ -0.02
SS18-211ENST00000578954 HSPBAP1Q96EW2 488 aa14.93□□□□□ -0.02
SS18-211ENST00000578954 NSMCE2Q96MF7 247 aa14.93□□□□□ -0.02
SS18-211ENST00000578954 TREX2Q9BQ50 279 aaPredicted RBP14.93□□□□□ -0.02
SS18-211ENST00000578954 ZNF160Q9HCG1 818 aa14.93□□□□□ -0.02
SS18-211ENST00000578954 CBLCQ9ULV8 474 aa14.93□□□□□ -0.02
SS18-211ENST00000578954 C5orf58C9J3I9 102 aa14.92□□□□□ -0.02
SS18-211ENST00000578954 PEX12O00623 359 aa14.92□□□□□ -0.02
SS18-211ENST00000578954 TLX3O43711 291 aaPredicted RBP14.92□□□□□ -0.02
SS18-211ENST00000578954 PDE9AO76083 593 aa14.92□□□□□ -0.02
SS18-211ENST00000578954 H6PDO95479 791 aa14.92□□□□□ -0.02
SS18-211ENST00000578954 C8BP07358 591 aa14.92□□□□□ -0.02
SS18-211ENST00000578954 ELF3P78545 371 aaPredicted RBP14.92□□□□□ -0.02
SS18-211ENST00000578954 CHAF1BQ13112 559 aa14.92□□□□□ -0.02
SS18-211ENST00000578954 ATP1A4Q13733 1029 aa14.92□□□□□ -0.02
SS18-211ENST00000578954 CPEB4Q17RY0 729 aaKnown RBP eCLIP14.92□□□□□ -0.02
SS18-211ENST00000578954 RPS26P11Q5JNZ5 115 aaPredicted RBP14.92□□□□□ -0.02
SS18-211ENST00000578954 HLA-DQA1Q5Y7H0 255 aa14.92□□□□□ -0.02
SS18-211ENST00000578954 TYW3Q6IPR3 259 aaKnown RBP14.92□□□□□ -0.02
SS18-211ENST00000578954 VASH2Q86V25 355 aa14.92□□□□□ -0.02
SS18-211ENST00000578954 OR4N2Q8NGD1 307 aa14.92□□□□□ -0.02
SS18-211ENST00000578954 RMND5BQ96G75 393 aaPredicted RBP14.92□□□□□ -0.02
SS18-211ENST00000578954 RNF145Q96MT1 663 aa14.92□□□□□ -0.02
SS18-211ENST00000578954 GAL3ST4Q96RP7 486 aa14.92□□□□□ -0.02
SS18-211ENST00000578954 DCAF13Q9NV06 445 aaKnown RBP14.92□□□□□ -0.02
SS18-211ENST00000578954 SSUH2Q9Y2M2 353 aa14.92□□□□□ -0.02
SS18-211ENST00000578954 GPC6Q9Y625 555 aaPredicted RBP14.92□□□□□ -0.02
SS18-211ENST00000578954 A8MUI8 341 aa14.91□□□□□ -0.02
SS18-211ENST00000578954 KIAA0513O60268 411 aa14.91□□□□□ -0.02
SS18-211ENST00000578954 STX11O75558 287 aa14.91□□□□□ -0.02
SS18-211ENST00000578954 NADKO95544 446 aaPredicted RBP14.91□□□□□ -0.02
SS18-211ENST00000578954 IL33O95760 270 aa14.91□□□□□ -0.02
SS18-211ENST00000578954 IGKV1D-16P01601 117 aa14.91□□□□□ -0.02
SS18-211ENST00000578954 SERPINA7P05543 415 aa14.91□□□□□ -0.02
SS18-211ENST00000578954 WT1P19544 449 aaPredicted RBP14.91□□□□□ -0.02
SS18-211ENST00000578954 RPS4Y1P22090 263 aaKnown RBP14.91□□□□□ -0.02
SS18-211ENST00000578954 LCN1P31025 176 aa14.91□□□□□ -0.02
SS18-211ENST00000578954 NR0B1P51843 470 aaKnown RBP14.91□□□□□ -0.02
SS18-211ENST00000578954 AP2B1P63010 937 aa14.91□□□□□ -0.02
SS18-211ENST00000578954 HPCAP84074 193 aa14.91□□□□□ -0.02
SS18-211ENST00000578954 RHDQ02161 417 aa14.91□□□□□ -0.02
SS18-211ENST00000578954 CHRNEQ04844 493 aa14.91□□□□□ -0.02
SS18-211ENST00000578954 Q0VFX4 171 aa14.91□□□□□ -0.02
SS18-211ENST00000578954 GPAT3Q53EU6 434 aa14.91□□□□□ -0.02
SS18-211ENST00000578954 H3F3CQ6NXT2 135 aa14.91□□□□□ -0.02
SS18-211ENST00000578954 CYP2R1Q6VVX0 501 aa14.91□□□□□ -0.02
SS18-211ENST00000578954 CBLL1Q75N03 491 aa14.91□□□□□ -0.02
SS18-211ENST00000578954 SPPL2CQ8IUH8 684 aa14.91□□□□□ -0.02
SS18-211ENST00000578954 SLC34A3Q8N130 599 aa14.91□□□□□ -0.02
SS18-211ENST00000578954 BCORP1Q8N888 145 aa14.91□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms