RNA–Protein interactions for RNA: ENST00000576019.5

VPS53-219, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 613 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-219ENST00000576019 ZNF444Q8N0Y2 327 aaPredicted RBP5.19□□□□□ -1.58
VPS53-219ENST00000576019 NEXN-AS1Q8NBZ9 246 aa5.19□□□□□ -1.58
VPS53-219ENST00000576019 RNF149Q8NC42 400 aa5.19□□□□□ -1.58
VPS53-219ENST00000576019 ITFG1Q8TB96 612 aa5.19□□□□□ -1.58
VPS53-219ENST00000576019 MIPOL1Q8TD10 442 aa5.19□□□□□ -1.58
VPS53-219ENST00000576019 GIPC3Q8TF64 312 aa5.19□□□□□ -1.58
VPS53-219ENST00000576019 TMEM255BQ8WV15 326 aa5.19□□□□□ -1.58
VPS53-219ENST00000576019 STARD8Q92502 1023 aa5.19□□□□□ -1.58
VPS53-219ENST00000576019 PEX13Q92968 403 aa5.19□□□□□ -1.58
VPS53-219ENST00000576019 URM1Q9BTM9 101 aaKnown RBP5.19□□□□□ -1.58
VPS53-219ENST00000576019 PANK2Q9BZ23 570 aa5.19□□□□□ -1.58
VPS53-219ENST00000576019 LRRCC1Q9C099 1032 aa5.19□□□□□ -1.58
VPS53-219ENST00000576019 WWP1Q9H0M0 922 aa5.19□□□□□ -1.58
VPS53-219ENST00000576019 APMAPQ9HDC9 416 aa5.19□□□□□ -1.58
VPS53-219ENST00000576019 KRCC1Q9NPI7 259 aaPredicted RBP5.19□□□□□ -1.58
VPS53-219ENST00000576019 ZNF701Q9NV72 531 aaPredicted RBP5.19□□□□□ -1.58
VPS53-219ENST00000576019 SLC12A6Q9UHW9 1150 aa5.19□□□□□ -1.58
VPS53-219ENST00000576019 TEKT2Q9UIF3 430 aa5.19□□□□□ -1.58
VPS53-219ENST00000576019 CRLS1Q9UJA2 301 aa5.19□□□□□ -1.58
VPS53-219ENST00000576019 PILRAQ9UKJ1 303 aa5.19□□□□□ -1.58
VPS53-219ENST00000576019 STUB1Q9UNE7 303 aa5.19□□□□□ -1.58
VPS53-219ENST00000576019 OR2W1Q9Y3N9 320 aa5.19□□□□□ -1.58
VPS53-219ENST00000576019 OR10H1Q9Y4A9 318 aa5.19□□□□□ -1.58
VPS53-219ENST00000576019 RNF115Q9Y4L5 304 aa5.19□□□□□ -1.58
VPS53-219ENST00000576019 COLEC10Q9Y6Z7 277 aa5.19□□□□□ -1.58
VPS53-219ENST00000576019 MXRA5Q9NR99 2828 aa5.19□□□□□ -1.58
VPS53-219ENST00000576019 IGHV4-28A0A0C4DH34 117 aa5.18□□□□□ -1.58
VPS53-219ENST00000576019 ESYT2A0FGR8 921 aa5.18□□□□□ -1.58
VPS53-219ENST00000576019 C5orf60A6NFR6 353 aa5.18□□□□□ -1.58
VPS53-219ENST00000576019 MEI4A8MW99 385 aa5.18□□□□□ -1.58
VPS53-219ENST00000576019 ADAM10O14672 748 aa5.18□□□□□ -1.58
VPS53-219ENST00000576019 CHEK1O14757 476 aa5.18□□□□□ -1.58
VPS53-219ENST00000576019 ZNF264O43296 627 aa5.18□□□□□ -1.58
VPS53-219ENST00000576019 NEMFO60524 1076 aa5.18□□□□□ -1.58
VPS53-219ENST00000576019 SOX30O94993 753 aa5.18□□□□□ -1.58
VPS53-219ENST00000576019 FCARP24071 287 aa5.18□□□□□ -1.58
VPS53-219ENST00000576019 TRIM23P36406 574 aa5.18□□□□□ -1.58
VPS53-219ENST00000576019 CAPGP40121 348 aa5.18□□□□□ -1.58
VPS53-219ENST00000576019 TMPOP42166 694 aaKnown RBP5.18□□□□□ -1.58
VPS53-219ENST00000576019 UQCRFS1P47985 274 aa5.18□□□□□ -1.58
VPS53-219ENST00000576019 ENTPD1P49961 510 aa5.18□□□□□ -1.58
VPS53-219ENST00000576019 NTHL1P78549 312 aa5.18□□□□□ -1.58
VPS53-219ENST00000576019 ZBTB17Q13105 803 aa5.18□□□□□ -1.58
VPS53-219ENST00000576019 TMEM132DQ14C87 1099 aa5.18□□□□□ -1.58
VPS53-219ENST00000576019 ARHGAP19Q14CB8 494 aa5.18□□□□□ -1.58
VPS53-219ENST00000576019 CDSNQ15517 529 aa5.18□□□□□ -1.58
VPS53-219ENST00000576019 DPYSL2Q16555 572 aa5.18□□□□□ -1.58
VPS53-219ENST00000576019 ZNF311Q5JNZ3 666 aa5.18□□□□□ -1.58
VPS53-219ENST00000576019 HIST2H2AA3Q6FI13 130 aa5.18□□□□□ -1.58
VPS53-219ENST00000576019 CAPRIN2Q6IMN6 1127 aaKnown RBP5.18□□□□□ -1.58
VPS53-219ENST00000576019 TRIM65Q6PJ69 517 aa5.18□□□□□ -1.58
VPS53-219ENST00000576019 CORO6Q6QEF8 472 aa5.18□□□□□ -1.58
VPS53-219ENST00000576019 CEACAM20Q6UY09 585 aa5.18□□□□□ -1.58
VPS53-219ENST00000576019 SYT10Q6XYQ8 523 aa5.18□□□□□ -1.58
VPS53-219ENST00000576019 C17orf107Q6ZR85 190 aa5.18□□□□□ -1.58
VPS53-219ENST00000576019 C5orf24Q7Z6I8 188 aa5.18□□□□□ -1.58
VPS53-219ENST00000576019 GLCCI1Q86VQ1 547 aa5.18□□□□□ -1.58
VPS53-219ENST00000576019 EGFL6Q8IUX8 553 aa5.18□□□□□ -1.58
VPS53-219ENST00000576019 ZC3H3Q8IXZ2 948 aaKnown RBP5.18□□□□□ -1.58
VPS53-219ENST00000576019 UBE2J2Q8N2K1 259 aa5.18□□□□□ -1.58
VPS53-219ENST00000576019 PRSS35Q8N3Z0 413 aa5.18□□□□□ -1.58
VPS53-219ENST00000576019 C7orf57Q8NEG2 295 aa5.18□□□□□ -1.58
VPS53-219ENST00000576019 ZNF397Q8NF99 534 aaPredicted RBP5.18□□□□□ -1.58
VPS53-219ENST00000576019 OR6M1Q8NGM8 313 aa5.18□□□□□ -1.58
VPS53-219ENST00000576019 SETD7Q8WTS6 366 aaKnown RBP5.18□□□□□ -1.58
VPS53-219ENST00000576019 ZNF578Q96N58 590 aaPredicted RBP5.18□□□□□ -1.58
VPS53-219ENST00000576019 C8orf49Q96NF6 230 aa5.18□□□□□ -1.58
VPS53-219ENST00000576019 SIGLEC11Q96RL6 698 aa5.18□□□□□ -1.58
VPS53-219ENST00000576019 AGPAT1Q99943 283 aa5.18□□□□□ -1.58
VPS53-219ENST00000576019 PKIBQ9C010 78 aa5.18□□□□□ -1.58
VPS53-219ENST00000576019 MEAF6Q9HAF1 191 aa5.18□□□□□ -1.58
VPS53-219ENST00000576019 KCNK13Q9HB14 408 aa5.18□□□□□ -1.58
VPS53-219ENST00000576019 PCDH9Q9HC56 1237 aa5.18□□□□□ -1.58
VPS53-219ENST00000576019 OLFML3Q9NRN5 406 aa5.18□□□□□ -1.58
VPS53-219ENST00000576019 SPHK1Q9NYA1 384 aa5.18□□□□□ -1.58
VPS53-219ENST00000576019 FZD10Q9ULW2 581 aa5.18□□□□□ -1.58
VPS53-219ENST00000576019 TESMINQ9Y4I5 508 aa5.18□□□□□ -1.58
VPS53-219ENST00000576019 MYLKQ15746 1914 aa5.18□□□□□ -1.58
VPS53-219ENST00000576019 NOTCH4Q99466 2003 aa5.18□□□□□ -1.58
VPS53-219ENST00000576019 A0A0U1RQS6 177 aa5.17□□□□□ -1.58
VPS53-219ENST00000576019 TMEM272A0A1B0GTI8 110 aa5.17□□□□□ -1.58
VPS53-219ENST00000576019 MYBPHLA2RUH7 354 aa5.17□□□□□ -1.58
VPS53-219ENST00000576019 RNF222A6NCQ9 220 aa5.17□□□□□ -1.58
VPS53-219ENST00000576019 BECN2A8MW95 431 aa5.17□□□□□ -1.58
VPS53-219ENST00000576019 ZNF732B4DXR9 585 aa5.17□□□□□ -1.58
VPS53-219ENST00000576019 NPIPA2E9PIF3 369 aa5.17□□□□□ -1.58
VPS53-219ENST00000576019 PPIAL4DF5H284 164 aa5.17□□□□□ -1.58
VPS53-219ENST00000576019 LRRTM2O43300 516 aa5.17□□□□□ -1.58
VPS53-219ENST00000576019 KRT86O43790 486 aa5.17□□□□□ -1.58
VPS53-219ENST00000576019 SDC3O75056 442 aa5.17□□□□□ -1.58
VPS53-219ENST00000576019 WDR1O75083 606 aa5.17□□□□□ -1.58
VPS53-219ENST00000576019 BCAS1O75363 584 aaPredicted RBP5.17□□□□□ -1.58
VPS53-219ENST00000576019 PAHP00439 452 aa5.17□□□□□ -1.58
VPS53-219ENST00000576019 GOT2P00505 430 aaKnown RBP5.17□□□□□ -1.58
VPS53-219ENST00000576019 CALCAP01258 141 aa5.17□□□□□ -1.58
VPS53-219ENST00000576019 CYP1A2P05177 515 aa5.17□□□□□ -1.58
VPS53-219ENST00000576019 TFAP2AP05549 437 aa5.17□□□□□ -1.58
VPS53-219ENST00000576019 GSTA2P09210 222 aa5.17□□□□□ -1.58
VPS53-219ENST00000576019 TPM1P09493 284 aa5.17□□□□□ -1.58
VPS53-219ENST00000576019 STAG3L3P0CL85 134 aa5.17□□□□□ -1.58
Retrieved 100 of 20,778 RNA–protein pairs in 49.8 ms