RNA–Protein interactions for RNA: ENST00000574029.5

VPS53-216, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4 BASIC

Gene VPS53, Length 585 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-216ENST00000574029 B3GALT5-AS1P59052 145 aa19.07■□□□□ 0.64
VPS53-216ENST00000574029 RAE1P78406 368 aaKnown RBP19.07■□□□□ 0.64
VPS53-216ENST00000574029 CLCQ05315 142 aa19.07■□□□□ 0.64
VPS53-216ENST00000574029 CSTF3Q12996 717 aaKnown RBP19.07■□□□□ 0.64
VPS53-216ENST00000574029 TCHHL1Q5QJ38 904 aaPredicted RBP19.07■□□□□ 0.64
VPS53-216ENST00000574029 OR5M10Q6IEU7 315 aa19.07■□□□□ 0.64
VPS53-216ENST00000574029 OR9A2Q8NGT5 310 aa19.07■□□□□ 0.64
VPS53-216ENST00000574029 KAT2AQ92830 837 aa19.07■□□□□ 0.64
VPS53-216ENST00000574029 PFDN4Q9NQP4 134 aa19.07■□□□□ 0.64
VPS53-216ENST00000574029 ZNF180Q9UJW8 692 aa19.07■□□□□ 0.64
VPS53-216ENST00000574029 DKKL1Q9UK85 242 aa19.07■□□□□ 0.64
VPS53-216ENST00000574029 EIF3LQ9Y262 564 aaKnown RBP19.07■□□□□ 0.64
VPS53-216ENST00000574029 TRIM49D1C9J1S8 452 aa19.06■□□□□ 0.64
VPS53-216ENST00000574029 ZNF500O60304 480 aaPredicted RBP19.06■□□□□ 0.64
VPS53-216ENST00000574029 KRT6AP02538 564 aa19.06■□□□□ 0.64
VPS53-216ENST00000574029 KRT6BP04259 564 aa19.06■□□□□ 0.64
VPS53-216ENST00000574029 IL3P08700 152 aa19.06■□□□□ 0.64
VPS53-216ENST00000574029 CHN1P15882 459 aa19.06■□□□□ 0.64
VPS53-216ENST00000574029 DPP4P27487 766 aa19.06■□□□□ 0.64
VPS53-216ENST00000574029 IL12BP29460 328 aa19.06■□□□□ 0.64
VPS53-216ENST00000574029 KRT20P35900 424 aa19.06■□□□□ 0.64
VPS53-216ENST00000574029 KRT6CP48668 564 aa19.06■□□□□ 0.64
VPS53-216ENST00000574029 ERCC6LQ2NKX8 1250 aa19.06■□□□□ 0.64
VPS53-216ENST00000574029 LARP4Q71RC2 724 aaKnown RBP eCLIP19.06■□□□□ 0.64
VPS53-216ENST00000574029 SAMD14Q8IZD0 417 aaPredicted RBP19.06■□□□□ 0.64
VPS53-216ENST00000574029 CDYL2Q8N8U2 506 aa19.06■□□□□ 0.64
VPS53-216ENST00000574029 DCAKDQ8WVC6 231 aa19.06■□□□□ 0.64
VPS53-216ENST00000574029 EXOSC8Q96B26 276 aaKnown RBP19.06■□□□□ 0.64
VPS53-216ENST00000574029 FOLH1BQ9HBA9 442 aa19.06■□□□□ 0.64
VPS53-216ENST00000574029 ADSLP30566 484 aaPredicted RBP19.05■□□□□ 0.64
VPS53-216ENST00000574029 CPOXP36551 454 aa19.05■□□□□ 0.64
VPS53-216ENST00000574029 DSCR4P56555 118 aaPredicted RBP19.05■□□□□ 0.64
VPS53-216ENST00000574029 FAM27E3Q08E93 113 aa19.05■□□□□ 0.64
VPS53-216ENST00000574029 RASA2Q15283 850 aa19.05■□□□□ 0.64
VPS53-216ENST00000574029 UNC50Q53HI1 259 aa19.05■□□□□ 0.64
VPS53-216ENST00000574029 OR2A2Q6IF42 318 aa19.05■□□□□ 0.64
VPS53-216ENST00000574029 Q71RC1 249 aaPredicted RBP19.05■□□□□ 0.64
VPS53-216ENST00000574029 IFT81Q8WYA0 676 aa19.05■□□□□ 0.64
VPS53-216ENST00000574029 STARD4Q96DR4 205 aa19.05■□□□□ 0.64
VPS53-216ENST00000574029 PIP5K1AQ99755 562 aa19.05■□□□□ 0.64
VPS53-216ENST00000574029 C17orf51A8MQB3 221 aa19.04■□□□□ 0.64
VPS53-216ENST00000574029 POC1B-GALNT4F8VUJ3 575 aa19.04■□□□□ 0.64
VPS53-216ENST00000574029 CTIFO43310 598 aaKnown RBP19.04■□□□□ 0.64
VPS53-216ENST00000574029 PCDH7O60245 1069 aa19.04■□□□□ 0.64
VPS53-216ENST00000574029 PLOD3O60568 738 aa19.04■□□□□ 0.64
VPS53-216ENST00000574029 PEPDP12955 493 aa19.04■□□□□ 0.64
VPS53-216ENST00000574029 ECHS1P30084 290 aa19.04■□□□□ 0.64
VPS53-216ENST00000574029 MRPS22P82650 360 aaKnown RBP19.04■□□□□ 0.64
VPS53-216ENST00000574029 HEPACAMQ14CZ8 416 aa19.04■□□□□ 0.64
VPS53-216ENST00000574029 ZNF678Q5SXM1 525 aa19.04■□□□□ 0.64
VPS53-216ENST00000574029 P4HA3Q7Z4N8 544 aa19.04■□□□□ 0.64
VPS53-216ENST00000574029 LRRC75A-AS1Q8N1F1 130 aa19.04■□□□□ 0.64
VPS53-216ENST00000574029 FADS6Q8N9I5 356 aa19.04■□□□□ 0.64
VPS53-216ENST00000574029 OR7G2Q8NG99 324 aa19.04■□□□□ 0.64
VPS53-216ENST00000574029 OR4N2Q8NGD1 307 aa19.04■□□□□ 0.64
VPS53-216ENST00000574029 EFHD2Q96C19 240 aaPredicted RBP19.04■□□□□ 0.64
VPS53-216ENST00000574029 MTBPQ96DY7 904 aa19.04■□□□□ 0.64
VPS53-216ENST00000574029 WFIKKN1Q96NZ8 548 aa19.04■□□□□ 0.64
VPS53-216ENST00000574029 ZNF382Q96SR6 550 aa19.04■□□□□ 0.64
VPS53-216ENST00000574029 ACPTQ9BZG2 426 aa19.04■□□□□ 0.64
VPS53-216ENST00000574029 SLC35C2Q9NQQ7 365 aa19.04■□□□□ 0.64
VPS53-216ENST00000574029 GNG14A0A1W2PPG7 69 aa19.03■□□□□ 0.64
VPS53-216ENST00000574029 SLC22A20A6NK97 555 aa19.03■□□□□ 0.64
VPS53-216ENST00000574029 DEFB108AA8MXU0 73 aa19.03■□□□□ 0.64
VPS53-216ENST00000574029 SIAH2O43255 324 aa19.03■□□□□ 0.64
VPS53-216ENST00000574029 ARHGEF9O43307 516 aa19.03■□□□□ 0.64
VPS53-216ENST00000574029 ULK1O75385 1050 aa19.03■□□□□ 0.64
VPS53-216ENST00000574029 SMNDC1O75940 238 aaKnown RBP eCLIP19.03■□□□□ 0.64
VPS53-216ENST00000574029 SUPT7LO94864 414 aa19.03■□□□□ 0.64
VPS53-216ENST00000574029 TCEA1P23193 301 aaKnown RBP19.03■□□□□ 0.64
VPS53-216ENST00000574029 MC3RP41968 323 aa19.03■□□□□ 0.64
VPS53-216ENST00000574029 SPIN4Q56A73 249 aa19.03■□□□□ 0.64
VPS53-216ENST00000574029 VWA1Q6PCB0 445 aa19.03■□□□□ 0.64
VPS53-216ENST00000574029 CLEC9AQ6UXN8 241 aa19.03■□□□□ 0.64
VPS53-216ENST00000574029 CHMP1BQ7LBR1 199 aa19.03■□□□□ 0.64
VPS53-216ENST00000574029 SLC44A2Q8IWA5 706 aaPredicted RBP19.03■□□□□ 0.64
VPS53-216ENST00000574029 IFT20Q8IY31 132 aa19.03■□□□□ 0.64
VPS53-216ENST00000574029 FAM9CQ8IZT9 166 aa19.03■□□□□ 0.64
VPS53-216ENST00000574029 OR4K17Q8NGC6 315 aa19.03■□□□□ 0.64
VPS53-216ENST00000574029 METTL6Q8TCB7 284 aa19.03■□□□□ 0.64
VPS53-216ENST00000574029 C16orf78Q8WTQ4 265 aa19.03■□□□□ 0.64
VPS53-216ENST00000574029 C11orf24Q96F05 449 aaPredicted RBP19.03■□□□□ 0.64
VPS53-216ENST00000574029 APIPQ96GX9 242 aa19.03■□□□□ 0.64
VPS53-216ENST00000574029 FMO2Q99518 471 aa19.03■□□□□ 0.64
VPS53-216ENST00000574029 STMN4Q9H169 189 aaPredicted RBP19.03■□□□□ 0.64
VPS53-216ENST00000574029 GIMAP4Q9NUV9 329 aa19.03■□□□□ 0.64
VPS53-216ENST00000574029 TAS2R9Q9NYW1 312 aa19.03■□□□□ 0.64
VPS53-216ENST00000574029 C6orf203Q9P0P8 240 aaPredicted RBP19.03■□□□□ 0.64
VPS53-216ENST00000574029 TIA1P31483 386 aaKnown RBP eCLIP19.02■□□□□ 0.64
VPS53-216ENST00000574029 EVI2BP34910 448 aa19.02■□□□□ 0.64
VPS53-216ENST00000574029 MPIP34949 423 aa19.02■□□□□ 0.64
VPS53-216ENST00000574029 CD79BP40259 229 aa19.02■□□□□ 0.64
VPS53-216ENST00000574029 KIR2DL2P43627 348 aaPredicted RBP19.02■□□□□ 0.64
VPS53-216ENST00000574029 HTR6P50406 440 aa19.02■□□□□ 0.64
VPS53-216ENST00000574029 CLDN15P56746 228 aa19.02■□□□□ 0.64
VPS53-216ENST00000574029 PSG6Q00889 435 aa19.02■□□□□ 0.64
VPS53-216ENST00000574029 TEX35Q5T0J7 233 aa19.02■□□□□ 0.64
VPS53-216ENST00000574029 GALNT18Q6P9A2 607 aa19.02■□□□□ 0.64
VPS53-216ENST00000574029 ZNF474Q6S9Z5 364 aaPredicted RBP19.02■□□□□ 0.64
VPS53-216ENST00000574029 GPRIN3Q6ZVF9 776 aa19.02■□□□□ 0.64
Retrieved 100 of 20,778 RNA–protein pairs in 76.4 ms