RNA–Protein interactions for RNA: ENST00000572809.1

NUP88-205, Transcript of nucleoporin 88, humanhuman

TSL 3

Gene NUP88, Length 771 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-205ENST00000572809 SPPL2AQ8TCT8 520 aa6.82□□□□□ -1.32
NUP88-205ENST00000572809 EXOSC8Q96B26 276 aaKnown RBP6.82□□□□□ -1.32
NUP88-205ENST00000572809 SDCCAG3Q96C92 435 aa6.82□□□□□ -1.32
NUP88-205ENST00000572809 CTHRC1Q96CG8 243 aa6.82□□□□□ -1.32
NUP88-205ENST00000572809 HSPBAP1Q96EW2 488 aa6.82□□□□□ -1.32
NUP88-205ENST00000572809 C11orf24Q96F05 449 aaPredicted RBP6.82□□□□□ -1.32
NUP88-205ENST00000572809 CNRIP1Q96F85 164 aaPredicted RBP6.82□□□□□ -1.32
NUP88-205ENST00000572809 LCORQ96JN0 433 aaPredicted RBP6.82□□□□□ -1.32
NUP88-205ENST00000572809 JSRP1Q96MG2 331 aaPredicted RBP6.82□□□□□ -1.32
NUP88-205ENST00000572809 SMC6Q96SB8 1091 aa6.82□□□□□ -1.32
NUP88-205ENST00000572809 SECISBP2Q96T21 854 aaKnown RBP6.82□□□□□ -1.32
NUP88-205ENST00000572809 DOHHQ9BU89 302 aa6.82□□□□□ -1.32
NUP88-205ENST00000572809 SHCBP1LQ9BZQ2 653 aa6.82□□□□□ -1.32
NUP88-205ENST00000572809 ROPN1BQ9BZX4 212 aaPredicted RBP6.82□□□□□ -1.32
NUP88-205ENST00000572809 NXF5Q9H1B4 397 aaKnown RBP6.82□□□□□ -1.32
NUP88-205ENST00000572809 TP63Q9H3D4 680 aaPredicted RBP6.82□□□□□ -1.32
NUP88-205ENST00000572809 EXO5Q9H790 373 aa6.82□□□□□ -1.32
NUP88-205ENST00000572809 ROPN1Q9HAT0 212 aaPredicted RBP6.82□□□□□ -1.32
NUP88-205ENST00000572809 GP6Q9HCN6 339 aa6.82□□□□□ -1.32
NUP88-205ENST00000572809 RRAGDQ9NQL2 400 aaPredicted RBP6.82□□□□□ -1.32
NUP88-205ENST00000572809 PFDN4Q9NQP4 134 aa6.82□□□□□ -1.32
NUP88-205ENST00000572809 COQ3Q9NZJ6 369 aa6.82□□□□□ -1.32
NUP88-205ENST00000572809 MID2Q9UJV3 735 aa6.82□□□□□ -1.32
NUP88-205ENST00000572809 ACAD8Q9UKU7 415 aa6.82□□□□□ -1.32
NUP88-205ENST00000572809 CNOT11Q9UKZ1 510 aaKnown RBP6.82□□□□□ -1.32
NUP88-205ENST00000572809 BOKQ9UMX3 212 aaPredicted RBP6.82□□□□□ -1.32
NUP88-205ENST00000572809 PLLPQ9Y342 182 aa6.82□□□□□ -1.32
NUP88-205ENST00000572809 MAST4O15021 2626 aa6.81□□□□□ -1.32
NUP88-205ENST00000572809 SLC28A1O00337 649 aa6.81□□□□□ -1.32
NUP88-205ENST00000572809 AQP7O14520 342 aa6.81□□□□□ -1.32
NUP88-205ENST00000572809 BCKDKO14874 412 aa6.81□□□□□ -1.32
NUP88-205ENST00000572809 HCN1O60741 890 aa6.81□□□□□ -1.32
NUP88-205ENST00000572809 TRIM13O60858 407 aa6.81□□□□□ -1.32
NUP88-205ENST00000572809 TRIM3O75382 744 aaPredicted RBP6.81□□□□□ -1.32
NUP88-205ENST00000572809 SEC22BO75396 215 aa6.81□□□□□ -1.32
NUP88-205ENST00000572809 SNX4O95219 450 aa6.81□□□□□ -1.32
NUP88-205ENST00000572809 LRATO95237 230 aa6.81□□□□□ -1.32
NUP88-205ENST00000572809 SLU7O95391 586 aaKnown RBP6.81□□□□□ -1.32
NUP88-205ENST00000572809 CBX7O95931 251 aa6.81□□□□□ -1.32
NUP88-205ENST00000572809 ABCB1P08183 1280 aaPredicted RBP6.81□□□□□ -1.32
NUP88-205ENST00000572809 NUDT17P0C025 328 aa6.81□□□□□ -1.32
NUP88-205ENST00000572809 DRD5P21918 477 aa6.81□□□□□ -1.32
NUP88-205ENST00000572809 ABCD3P28288 659 aa6.81□□□□□ -1.32
NUP88-205ENST00000572809 CASP3P42574 277 aa6.81□□□□□ -1.32
NUP88-205ENST00000572809 PPICP45877 212 aa6.81□□□□□ -1.32
NUP88-205ENST00000572809 EMDP50402 254 aa6.81□□□□□ -1.32
NUP88-205ENST00000572809 DCAF7P61962 342 aa6.81□□□□□ -1.32
NUP88-205ENST00000572809 MRPS35P82673 323 aaKnown RBP6.81□□□□□ -1.32
NUP88-205ENST00000572809 PMPCAQ10713 525 aa6.81□□□□□ -1.32
NUP88-205ENST00000572809 DUSP8Q13202 625 aa6.81□□□□□ -1.32
NUP88-205ENST00000572809 CDK5R2Q13319 367 aa6.81□□□□□ -1.32
NUP88-205ENST00000572809 RPS6KA2Q15349 733 aa6.81□□□□□ -1.32
NUP88-205ENST00000572809 CDSNQ15517 529 aa6.81□□□□□ -1.32
NUP88-205ENST00000572809 LTB4RQ15722 352 aa6.81□□□□□ -1.32
NUP88-205ENST00000572809 SFRP5Q5T4F7 317 aa6.81□□□□□ -1.32
NUP88-205ENST00000572809 WLSQ5T9L3 541 aa6.81□□□□□ -1.32
NUP88-205ENST00000572809 WDR93Q6P2C0 686 aa6.81□□□□□ -1.32
NUP88-205ENST00000572809 ZNF585AQ6P3V2 769 aa6.81□□□□□ -1.32
NUP88-205ENST00000572809 NUP54Q7Z3B4 507 aa6.81□□□□□ -1.32
NUP88-205ENST00000572809 TRABD2AQ86V40 505 aa6.81□□□□□ -1.32
NUP88-205ENST00000572809 C10orf107Q8IVU9 208 aa6.81□□□□□ -1.32
NUP88-205ENST00000572809 BANPQ8N9N5 519 aa6.81□□□□□ -1.32
NUP88-205ENST00000572809 OR52R1Q8NGF1 315 aa6.81□□□□□ -1.32
NUP88-205ENST00000572809 OR5M9Q8NGP3 310 aa6.81□□□□□ -1.32
NUP88-205ENST00000572809 FAM76AQ8TAV0 307 aa6.81□□□□□ -1.32
NUP88-205ENST00000572809 ZNF675Q8TD23 568 aa6.81□□□□□ -1.32
NUP88-205ENST00000572809 CA5BP1Q8WTZ4 195 aa6.81□□□□□ -1.32
NUP88-205ENST00000572809 RND1Q92730 232 aa6.81□□□□□ -1.32
NUP88-205ENST00000572809 SARAFQ96BY9 339 aa6.81□□□□□ -1.32
NUP88-205ENST00000572809 BBS4Q96RK4 519 aa6.81□□□□□ -1.32
NUP88-205ENST00000572809 EBPLQ9BY08 206 aa6.81□□□□□ -1.32
NUP88-205ENST00000572809 ANGPTL4Q9BY76 406 aa6.81□□□□□ -1.32
NUP88-205ENST00000572809 IQCGQ9H095 443 aaKnown RBP6.81□□□□□ -1.32
NUP88-205ENST00000572809 ACKR4Q9NPB9 350 aa6.81□□□□□ -1.32
NUP88-205ENST00000572809 SLC35C2Q9NQQ7 365 aa6.81□□□□□ -1.32
NUP88-205ENST00000572809 PNPLA3Q9NST1 481 aa6.81□□□□□ -1.32
NUP88-205ENST00000572809 GIMAP4Q9NUV9 329 aa6.81□□□□□ -1.32
NUP88-205ENST00000572809 QPCTLQ9NXS2 382 aa6.81□□□□□ -1.32
NUP88-205ENST00000572809 ALKBH4Q9NXW9 302 aa6.81□□□□□ -1.32
NUP88-205ENST00000572809 PRR13Q9NZ81 148 aa6.81□□□□□ -1.32
NUP88-205ENST00000572809 EHD3Q9NZN3 535 aa6.81□□□□□ -1.32
NUP88-205ENST00000572809 TNFRSF10DQ9UBN6 386 aa6.81□□□□□ -1.32
NUP88-205ENST00000572809 PRODH2Q9UF12 536 aa6.81□□□□□ -1.32
NUP88-205ENST00000572809 DTX4Q9Y2E6 619 aa6.81□□□□□ -1.32
NUP88-205ENST00000572809 WBP11Q9Y2W2 641 aaKnown RBP6.81□□□□□ -1.32
NUP88-205ENST00000572809 LIPGQ9Y5X9 500 aa6.81□□□□□ -1.32
NUP88-205ENST00000572809 AZIN1O14977 448 aa6.8□□□□□ -1.32
NUP88-205ENST00000572809 ACOX3O15254 700 aa6.8□□□□□ -1.32
NUP88-205ENST00000572809 RGS14O43566 566 aa6.8□□□□□ -1.32
NUP88-205ENST00000572809 ZNF500O60304 480 aaPredicted RBP6.8□□□□□ -1.32
NUP88-205ENST00000572809 SPAG7O75391 227 aa6.8□□□□□ -1.32
NUP88-205ENST00000572809 TRAPPC6AO75865 159 aa6.8□□□□□ -1.32
NUP88-205ENST00000572809 RSL1D1O76021 490 aaKnown RBP6.8□□□□□ -1.32
NUP88-205ENST00000572809 FGF4P08620 206 aa6.8□□□□□ -1.32
NUP88-205ENST00000572809 HOXD4P09016 255 aaPredicted RBP6.8□□□□□ -1.32
NUP88-205ENST00000572809 COX6B1P14854 86 aa6.8□□□□□ -1.32
NUP88-205ENST00000572809 DDCP20711 480 aa6.8□□□□□ -1.32
NUP88-205ENST00000572809 ACVR2AP27037 513 aa6.8□□□□□ -1.32
NUP88-205ENST00000572809 GDF1P27539 372 aa6.8□□□□□ -1.32
NUP88-205ENST00000572809 KIR3DL1P43629 444 aa6.8□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 44.8 ms