RNA–Protein interactions for RNA: ENST00000568612.5

VPS35-208, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 697 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-208ENST00000568612 HYLS1Q96M11 299 aa3.06□□□□□ -1.92
VPS35-208ENST00000568612 GLT1D1Q96MS3 346 aa3.06□□□□□ -1.92
VPS35-208ENST00000568612 ZNF48Q96MX3 618 aaPredicted RBP3.06□□□□□ -1.92
VPS35-208ENST00000568612 WFIKKN1Q96NZ8 548 aa3.06□□□□□ -1.92
VPS35-208ENST00000568612 ARHGEF17Q96PE2 2063 aaPredicted RBP3.06□□□□□ -1.92
VPS35-208ENST00000568612 FYTTD1Q96QD9 318 aaKnown RBP3.06□□□□□ -1.92
VPS35-208ENST00000568612 KCNK16Q96T55 309 aa3.06□□□□□ -1.92
VPS35-208ENST00000568612 KLF6Q99612 283 aaPredicted RBP3.06□□□□□ -1.92
VPS35-208ENST00000568612 P2RY13Q9BPV8 354 aa3.06□□□□□ -1.92
VPS35-208ENST00000568612 FAM118BQ9BPY3 351 aa3.06□□□□□ -1.92
VPS35-208ENST00000568612 APOL2Q9BQE5 337 aa3.06□□□□□ -1.92
VPS35-208ENST00000568612 ZNF577Q9BSK1 485 aa3.06□□□□□ -1.92
VPS35-208ENST00000568612 MTG1Q9BT17 334 aaPredicted RBP3.06□□□□□ -1.92
VPS35-208ENST00000568612 CRB3Q9BUF7 120 aa3.06□□□□□ -1.92
VPS35-208ENST00000568612 TMED9Q9BVK6 235 aa3.06□□□□□ -1.92
VPS35-208ENST00000568612 FSD1LQ9BXM9 530 aa3.06□□□□□ -1.92
VPS35-208ENST00000568612 POLDIP3Q9BY77 421 aaKnown RBP3.06□□□□□ -1.92
VPS35-208ENST00000568612 MRPL13Q9BYD1 178 aaKnown RBP3.06□□□□□ -1.92
VPS35-208ENST00000568612 REG4Q9BYZ8 158 aa3.06□□□□□ -1.92
VPS35-208ENST00000568612 TRIM31Q9BZY9 425 aa3.06□□□□□ -1.92
VPS35-208ENST00000568612 ARHGAP39Q9C0H5 1083 aa3.06□□□□□ -1.92
VPS35-208ENST00000568612 ST6GALNAC4Q9H4F1 302 aa3.06□□□□□ -1.92
VPS35-208ENST00000568612 RANGRFQ9HD47 186 aaPredicted RBP3.06□□□□□ -1.92
VPS35-208ENST00000568612 MID1IP1Q9NPA3 183 aa3.06□□□□□ -1.92
VPS35-208ENST00000568612 SLCO1B3Q9NPD5 702 aa3.06□□□□□ -1.92
VPS35-208ENST00000568612 SPAG4Q9NPE6 437 aa3.06□□□□□ -1.92
VPS35-208ENST00000568612 NECTIN3Q9NQS3 549 aa3.06□□□□□ -1.92
VPS35-208ENST00000568612 FBXO6Q9NRD1 293 aaPredicted RBP3.06□□□□□ -1.92
VPS35-208ENST00000568612 SNTG1Q9NSN8 517 aa3.06□□□□□ -1.92
VPS35-208ENST00000568612 FAM49BQ9NUQ9 324 aa3.06□□□□□ -1.92
VPS35-208ENST00000568612 GRHL1Q9NZI5 618 aa3.06□□□□□ -1.92
VPS35-208ENST00000568612 VAPAQ9P0L0 249 aa3.06□□□□□ -1.92
VPS35-208ENST00000568612 HEY2Q9UBP5 337 aa3.06□□□□□ -1.92
VPS35-208ENST00000568612 METTL1Q9UBP6 276 aaKnown RBP3.06□□□□□ -1.92
VPS35-208ENST00000568612 GHRLQ9UBU3 117 aa3.06□□□□□ -1.92
VPS35-208ENST00000568612 AASSQ9UDR5 926 aa3.06□□□□□ -1.92
VPS35-208ENST00000568612 TBC1D29Q9UFV1 150 aa3.06□□□□□ -1.92
VPS35-208ENST00000568612 ARMCX3Q9UH62 379 aaPredicted RBP3.06□□□□□ -1.92
VPS35-208ENST00000568612 SLCO3A1Q9UIG8 710 aa3.06□□□□□ -1.92
VPS35-208ENST00000568612 SCP2D1Q9UJQ7 156 aa3.06□□□□□ -1.92
VPS35-208ENST00000568612 ITGA11Q9UKX5 1188 aa3.06□□□□□ -1.92
VPS35-208ENST00000568612 KCNJ14Q9UNX9 436 aa3.06□□□□□ -1.92
VPS35-208ENST00000568612 POMPQ9Y244 141 aa3.06□□□□□ -1.92
VPS35-208ENST00000568612 KCNIP3Q9Y2W7 256 aa3.06□□□□□ -1.92
VPS35-208ENST00000568612 HSPB11Q9Y547 144 aa3.06□□□□□ -1.92
VPS35-208ENST00000568612 CHD5Q8TDI0 1954 aa3.05□□□□□ -1.92
VPS35-208ENST00000568612 OTOFQ9HC10 1997 aa3.05□□□□□ -1.92
VPS35-208ENST00000568612 MTCL1Q9Y4B5 1905 aaKnown RBP3.05□□□□□ -1.92
VPS35-208ENST00000568612 CCDC88AQ3V6T2 1871 aa3.05□□□□□ -1.92
VPS35-208ENST00000568612 ADAMTSL3P82987 1691 aa3.05□□□□□ -1.92
VPS35-208ENST00000568612 SETBP1Q9Y6X0 1596 aa3.05□□□□□ -1.92
VPS35-208ENST00000568612 ADAMTS13Q76LX8 1427 aa3.05□□□□□ -1.92
VPS35-208ENST00000568612 A0A087X0M5 115 aa3.05□□□□□ -1.92
VPS35-208ENST00000568612 A0A0G2JND7 137 aa3.05□□□□□ -1.92
VPS35-208ENST00000568612 A0A0U1RQS6 177 aa3.05□□□□□ -1.92
VPS35-208ENST00000568612 A0A1B0GX30 115 aa3.05□□□□□ -1.92
VPS35-208ENST00000568612 A0A1W2PPH5 198 aa3.05□□□□□ -1.92
VPS35-208ENST00000568612 SLC5A10A0PJK1 596 aa3.05□□□□□ -1.92
VPS35-208ENST00000568612 C5orf52A6NGY3 159 aa3.05□□□□□ -1.92
VPS35-208ENST00000568612 MYMKA6NI61 221 aa3.05□□□□□ -1.92
VPS35-208ENST00000568612 AGAP5A6NIR3 686 aa3.05□□□□□ -1.92
VPS35-208ENST00000568612 FAM74A7A6NL05 159 aa3.05□□□□□ -1.92
VPS35-208ENST00000568612 DUXAA6NLW8 204 aa3.05□□□□□ -1.92
VPS35-208ENST00000568612 ARHGEF33A8MVX0 844 aa3.05□□□□□ -1.92
VPS35-208ENST00000568612 KCNU1A8MYU2 1149 aa3.05□□□□□ -1.92
VPS35-208ENST00000568612 E7ESA3 106 aa3.05□□□□□ -1.92
VPS35-208ENST00000568612 LRRN3E7EW58 273 aa3.05□□□□□ -1.92
VPS35-208ENST00000568612 POC1B-GALNT4F8VUJ3 575 aa3.05□□□□□ -1.92
VPS35-208ENST00000568612 H0YAE9 185 aa3.05□□□□□ -1.92
VPS35-208ENST00000568612 GTPBP1O00178 669 aaKnown RBP3.05□□□□□ -1.92
VPS35-208ENST00000568612 PRMT5O14744 637 aaPredicted RBP3.05□□□□□ -1.92
VPS35-208ENST00000568612 LRRTM2O43300 516 aa3.05□□□□□ -1.92
VPS35-208ENST00000568612 COCHO43405 550 aa3.05□□□□□ -1.92
VPS35-208ENST00000568612 PRKAB2O43741 272 aa3.05□□□□□ -1.92
VPS35-208ENST00000568612 FADS1O60427 444 aa3.05□□□□□ -1.92
VPS35-208ENST00000568612 RAD1O60671 282 aa3.05□□□□□ -1.92
VPS35-208ENST00000568612 SDC3O75056 442 aa3.05□□□□□ -1.92
VPS35-208ENST00000568612 BCAS2O75934 225 aaPredicted RBP3.05□□□□□ -1.92
VPS35-208ENST00000568612 SORBS2O94875 1100 aaKnown RBP3.05□□□□□ -1.92
VPS35-208ENST00000568612 VAPBO95292 243 aa3.05□□□□□ -1.92
VPS35-208ENST00000568612 MLYCDO95822 493 aa3.05□□□□□ -1.92
VPS35-208ENST00000568612 MOCS2O96007 188 aaPredicted RBP3.05□□□□□ -1.92
VPS35-208ENST00000568612 CSF2P04141 144 aa3.05□□□□□ -1.92
VPS35-208ENST00000568612 LIPFP07098 398 aa3.05□□□□□ -1.92
VPS35-208ENST00000568612 ABHD2P08910 425 aa3.05□□□□□ -1.92
VPS35-208ENST00000568612 FGF2P09038 288 aa3.05□□□□□ -1.92
VPS35-208ENST00000568612 TMIGD3P0DMS9 266 aaPredicted RBP3.05□□□□□ -1.92
VPS35-208ENST00000568612 SPP1P10451 314 aa3.05□□□□□ -1.92
VPS35-208ENST00000568612 HGFP14210 728 aa3.05□□□□□ -1.92
VPS35-208ENST00000568612 DAOP14920 347 aa3.05□□□□□ -1.92
VPS35-208ENST00000568612 MYOGP15173 224 aa3.05□□□□□ -1.92
VPS35-208ENST00000568612 CREB1P16220 341 aa3.05□□□□□ -1.92
VPS35-208ENST00000568612 TPH1P17752 444 aa3.05□□□□□ -1.92
VPS35-208ENST00000568612 NELFEP18615 380 aaKnown RBP3.05□□□□□ -1.92
VPS35-208ENST00000568612 IL11P20809 199 aa3.05□□□□□ -1.92
VPS35-208ENST00000568612 ATP6V1B2P21281 511 aa3.05□□□□□ -1.92
VPS35-208ENST00000568612 TGM2P21980 687 aa3.05□□□□□ -1.92
VPS35-208ENST00000568612 ME2P23368 584 aa3.05□□□□□ -1.92
VPS35-208ENST00000568612 RPS3P23396 243 aaKnown RBP eCLIP3.05□□□□□ -1.92
VPS35-208ENST00000568612 DTYMKP23919 212 aa3.05□□□□□ -1.92
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms