RNA–Protein interactions for RNA: ENST00000568076.6

CLN3-230, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,968 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-230ENST00000568076 PUS10Q3MIT2 529 aaKnown RBP18.94■□□□□ 0.62
CLN3-230ENST00000568076 SOWAHCQ53LP3 525 aaPredicted RBP18.94■□□□□ 0.62
CLN3-230ENST00000568076 EXOSC6Q5RKV6 272 aaKnown RBP18.94■□□□□ 0.62
CLN3-230ENST00000568076 CCNJQ5T5M9 372 aa18.94■□□□□ 0.62
CLN3-230ENST00000568076 CA13Q8N1Q1 262 aa18.94■□□□□ 0.62
CLN3-230ENST00000568076 Q96MT0 163 aa18.94■□□□□ 0.62
CLN3-230ENST00000568076 OR51E2Q9H255 320 aa18.94■□□□□ 0.62
CLN3-230ENST00000568076 FAM60AQ9NP50 221 aa18.94■□□□□ 0.62
CLN3-230ENST00000568076 ETAA1Q9NY74 926 aa18.94■□□□□ 0.62
CLN3-230ENST00000568076 ZNF443Q9Y2A4 671 aaPredicted RBP18.94■□□□□ 0.62
CLN3-230ENST00000568076 IFT52Q9Y366 437 aa18.94■□□□□ 0.62
CLN3-230ENST00000568076 SCN2AQ99250 2005 aa18.94■□□□□ 0.62
CLN3-230ENST00000568076 CLDN25C9JDP6 229 aa18.93■□□□□ 0.62
CLN3-230ENST00000568076 ATP1B1P05026 303 aa18.93■□□□□ 0.62
CLN3-230ENST00000568076 ST6GAL1P15907 406 aa18.93■□□□□ 0.62
CLN3-230ENST00000568076 ZNF91Q05481 1191 aa18.93■□□□□ 0.62
CLN3-230ENST00000568076 MANEAQ5SRI9 462 aa18.93■□□□□ 0.62
CLN3-230ENST00000568076 MFSD4BQ5TF39 518 aa18.93■□□□□ 0.62
CLN3-230ENST00000568076 LINC00299Q6ZSB3 139 aa18.93■□□□□ 0.62
CLN3-230ENST00000568076 OOSP2Q86WS3 158 aa18.93■□□□□ 0.62
CLN3-230ENST00000568076 OR6Q1Q8NGQ2 317 aa18.93■□□□□ 0.62
CLN3-230ENST00000568076 WDR36Q8NI36 951 aaKnown RBP18.93■□□□□ 0.62
CLN3-230ENST00000568076 FGF11Q92914 225 aa18.93■□□□□ 0.62
CLN3-230ENST00000568076 POLDIP3Q9BY77 421 aaKnown RBP18.93■□□□□ 0.62
CLN3-230ENST00000568076 DCSTAMPQ9H295 470 aa18.93■□□□□ 0.62
CLN3-230ENST00000568076 RNF167Q9H6Y7 350 aa18.93■□□□□ 0.62
CLN3-230ENST00000568076 EGLN3Q9H6Z9 239 aa18.93■□□□□ 0.62
CLN3-230ENST00000568076 MTHFD2LQ9H903 347 aaPredicted RBP18.93■□□□□ 0.62
CLN3-230ENST00000568076 ADAP2Q9NPF8 381 aa18.93■□□□□ 0.62
CLN3-230ENST00000568076 WDR45Q9Y484 360 aa18.93■□□□□ 0.62
CLN3-230ENST00000568076 PCDHGA3Q9Y5H0 932 aa18.93■□□□□ 0.62
CLN3-230ENST00000568076 ANKRD33BA6NCL7 494 aa18.93■□□□□ 0.62
CLN3-230ENST00000568076 AGR2O95994 175 aa18.93■□□□□ 0.62
CLN3-230ENST00000568076 RPLP0P05388 317 aaKnown RBP18.93■□□□□ 0.62
CLN3-230ENST00000568076 CCNYL3P0C7X3 344 aa18.93■□□□□ 0.62
CLN3-230ENST00000568076 UGT2B10P36537 528 aa18.93■□□□□ 0.62
CLN3-230ENST00000568076 PCYT1AP49585 367 aa18.93■□□□□ 0.62
CLN3-230ENST00000568076 EFNB1P98172 346 aa18.93■□□□□ 0.62
CLN3-230ENST00000568076 TRAM2Q15035 370 aa18.93■□□□□ 0.62
CLN3-230ENST00000568076 OCLNQ16625 522 aa18.93■□□□□ 0.62
CLN3-230ENST00000568076 DEFB110Q30KQ9 67 aa18.93■□□□□ 0.62
CLN3-230ENST00000568076 ZNF836Q6ZNA1 936 aa18.93■□□□□ 0.62
CLN3-230ENST00000568076 LSRQ86X29 649 aaPredicted RBP18.93■□□□□ 0.62
CLN3-230ENST00000568076 NKAIN4Q8IVV8 208 aa18.93■□□□□ 0.62
CLN3-230ENST00000568076 ZNF655Q8N720 491 aaPredicted RBP18.93■□□□□ 0.62
CLN3-230ENST00000568076 ZDHHC1Q8WTX9 485 aa18.93■□□□□ 0.62
CLN3-230ENST00000568076 MSANTD3Q96H12 275 aa18.93■□□□□ 0.62
CLN3-230ENST00000568076 SDF2Q99470 211 aa18.93■□□□□ 0.62
CLN3-230ENST00000568076 LRRC61Q9BV99 259 aa18.93■□□□□ 0.62
CLN3-230ENST00000568076 TSSK6Q9BXA6 273 aa18.93■□□□□ 0.62
CLN3-230ENST00000568076 TTYH1Q9H313 450 aaPredicted RBP18.93■□□□□ 0.62
CLN3-230ENST00000568076 DSN1Q9H410 356 aa18.93■□□□□ 0.62
CLN3-230ENST00000568076 FBXO8Q9NRD0 319 aa18.93■□□□□ 0.62
CLN3-230ENST00000568076 FAM170BA6NMN3 283 aa18.92■□□□□ 0.62
CLN3-230ENST00000568076 MBTPS2O43462 519 aa18.92■□□□□ 0.62
CLN3-230ENST00000568076 TLX2O43763 284 aaPredicted RBP18.92■□□□□ 0.62
CLN3-230ENST00000568076 GPR75O95800 540 aa18.92■□□□□ 0.62
CLN3-230ENST00000568076 DBTP11182 482 aaKnown RBP18.92■□□□□ 0.62
CLN3-230ENST00000568076 SERPINB10P48595 397 aa18.92■□□□□ 0.62
CLN3-230ENST00000568076 RGS8P57771 180 aaPredicted RBP18.92■□□□□ 0.62
CLN3-230ENST00000568076 ZNF846Q147U1 533 aa18.92■□□□□ 0.62
CLN3-230ENST00000568076 MED22Q15528 200 aa18.92■□□□□ 0.62
CLN3-230ENST00000568076 SYT13Q7L8C5 426 aa18.92■□□□□ 0.62
CLN3-230ENST00000568076 MFSD4AQ8N468 514 aa18.92■□□□□ 0.62
CLN3-230ENST00000568076 FAM26EQ8N5C1 309 aa18.92■□□□□ 0.62
CLN3-230ENST00000568076 TMCO5AQ8N6Q1 288 aa18.92■□□□□ 0.62
CLN3-230ENST00000568076 NR4A3Q92570 626 aa18.92■□□□□ 0.62
CLN3-230ENST00000568076 MGLLQ99685 303 aa18.92■□□□□ 0.62
CLN3-230ENST00000568076 PIGUQ9H490 435 aa18.92■□□□□ 0.62
CLN3-230ENST00000568076 GALNT8Q9NY28 637 aa18.92■□□□□ 0.62
CLN3-230ENST00000568076 CNIH4Q9P003 139 aa18.92■□□□□ 0.62
CLN3-230ENST00000568076 CLEC2DQ9UHP7 191 aa18.92■□□□□ 0.62
CLN3-230ENST00000568076 POMT2Q9UKY4 750 aa18.92■□□□□ 0.62
CLN3-230ENST00000568076 LSM2Q9Y333 95 aaKnown RBP18.92■□□□□ 0.62
CLN3-230ENST00000568076 KRBA1A5PL33 1030 aa18.92■□□□□ 0.62
CLN3-230ENST00000568076 B4DGG1 531 aa18.92■□□□□ 0.62
CLN3-230ENST00000568076 SGK494L7N484 410 aa18.92■□□□□ 0.62
CLN3-230ENST00000568076 CT62P0C5K7 136 aa18.92■□□□□ 0.62
CLN3-230ENST00000568076 GSTM3P21266 225 aa18.92■□□□□ 0.62
CLN3-230ENST00000568076 OMPP47874 163 aa18.92■□□□□ 0.62
CLN3-230ENST00000568076 MGAT2Q10469 447 aa18.92■□□□□ 0.62
CLN3-230ENST00000568076 ST3GAL3Q11203 375 aa18.92■□□□□ 0.62
CLN3-230ENST00000568076 GAS6Q14393 721 aa18.92■□□□□ 0.62
CLN3-230ENST00000568076 PRICKLE4Q2TBC4 344 aa18.92■□□□□ 0.62
CLN3-230ENST00000568076 MEDAGQ5VYS4 303 aa18.92■□□□□ 0.62
CLN3-230ENST00000568076 ZNF730Q6ZMV8 503 aa18.92■□□□□ 0.62
CLN3-230ENST00000568076 PARGQ86W56 976 aa18.92■□□□□ 0.62
CLN3-230ENST00000568076 ARHGEF39Q8N4T4 335 aa18.92■□□□□ 0.62
CLN3-230ENST00000568076 OR8D4Q8NGM9 314 aa18.92■□□□□ 0.62
CLN3-230ENST00000568076 GNPDA2Q8TDQ7 276 aa18.92■□□□□ 0.62
CLN3-230ENST00000568076 KLHDC7BQ96G42 594 aa18.92■□□□□ 0.62
CLN3-230ENST00000568076 MCHR1Q99705 422 aa18.92■□□□□ 0.62
CLN3-230ENST00000568076 TPSD1Q9BZJ3 242 aa18.92■□□□□ 0.62
CLN3-230ENST00000568076 KLHL28Q9NXS3 571 aa18.92■□□□□ 0.62
CLN3-230ENST00000568076 RPL36Q9Y3U8 105 aaKnown RBP18.92■□□□□ 0.62
CLN3-230ENST00000568076 PLOD3O60568 738 aa18.91■□□□□ 0.62
CLN3-230ENST00000568076 BMP4P12644 408 aa18.91■□□□□ 0.62
CLN3-230ENST00000568076 NT5EP21589 574 aa18.91■□□□□ 0.62
CLN3-230ENST00000568076 BMP8BP34820 402 aa18.91■□□□□ 0.62
CLN3-230ENST00000568076 MLLT1Q03111 559 aaPredicted RBP18.91■□□□□ 0.62
Retrieved 100 of 20,778 RNA–protein pairs in 47.8 ms