RNA–Protein interactions for RNA: ENST00000566824.6

CLN3-225, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,326 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-225ENST00000566824 ZAR1Q86SH2 424 aa17.95■□□□□ 0.46
CLN3-225ENST00000566824 FBXW8Q8N3Y1 598 aa17.95■□□□□ 0.46
CLN3-225ENST00000566824 CDRT4Q8N9R6 151 aa17.95■□□□□ 0.46
CLN3-225ENST00000566824 OR56A1Q8NGH5 318 aa17.95■□□□□ 0.46
CLN3-225ENST00000566824 GPR151Q8TDV0 419 aa17.95■□□□□ 0.46
CLN3-225ENST00000566824 NTNG2Q96CW9 530 aa17.95■□□□□ 0.46
CLN3-225ENST00000566824 COL21A1Q96P44 957 aa17.95■□□□□ 0.46
CLN3-225ENST00000566824 TUBA8Q9NY65 449 aaPredicted RBP17.95■□□□□ 0.46
CLN3-225ENST00000566824 KLHL14Q9P2G3 628 aa17.95■□□□□ 0.46
CLN3-225ENST00000566824 CBLCQ9ULV8 474 aa17.95■□□□□ 0.46
CLN3-225ENST00000566824 ZGRF1Q86YA3 2104 aa17.94■□□□□ 0.46
CLN3-225ENST00000566824 HELZ2Q9BYK8 2649 aaKnown RBP17.94■□□□□ 0.46
CLN3-225ENST00000566824 C2orf72A6NCS6 295 aa17.94■□□□□ 0.46
CLN3-225ENST00000566824 CCDC154A6NI56 674 aa17.94■□□□□ 0.46
CLN3-225ENST00000566824 C17orf51A8MQB3 221 aa17.94■□□□□ 0.46
CLN3-225ENST00000566824 P04436 131 aa17.94■□□□□ 0.46
CLN3-225ENST00000566824 CYP4B1P13584 511 aa17.94■□□□□ 0.46
CLN3-225ENST00000566824 DRD4P21917 467 aa17.94■□□□□ 0.46
CLN3-225ENST00000566824 UQCRC2P22695 453 aa17.94■□□□□ 0.46
CLN3-225ENST00000566824 PTPN6P29350 595 aa17.94■□□□□ 0.46
CLN3-225ENST00000566824 PTGDSP41222 190 aa17.94■□□□□ 0.46
CLN3-225ENST00000566824 GNGT1P63211 74 aa17.94■□□□□ 0.46
CLN3-225ENST00000566824 FOXO1Q12778 655 aa17.94■□□□□ 0.46
CLN3-225ENST00000566824 RCAN2Q14206 197 aa17.94■□□□□ 0.46
CLN3-225ENST00000566824 ZNHIT3Q15649 155 aaPredicted RBP17.94■□□□□ 0.46
CLN3-225ENST00000566824 INAQ16352 499 aa17.94■□□□□ 0.46
CLN3-225ENST00000566824 VPS26BQ4G0F5 336 aa17.94■□□□□ 0.46
CLN3-225ENST00000566824 CCNJQ5T5M9 372 aa17.94■□□□□ 0.46
CLN3-225ENST00000566824 NUP54Q7Z3B4 507 aa17.94■□□□□ 0.46
CLN3-225ENST00000566824 VPS37AQ8NEZ2 397 aa17.94■□□□□ 0.46
CLN3-225ENST00000566824 OR5D16Q8NGK9 328 aa17.94■□□□□ 0.46
CLN3-225ENST00000566824 FAR1Q8WVX9 515 aa17.94■□□□□ 0.46
CLN3-225ENST00000566824 JADE3Q92613 823 aa17.94■□□□□ 0.46
CLN3-225ENST00000566824 DIO2Q92813 273 aa17.94■□□□□ 0.46
CLN3-225ENST00000566824 CDS1Q92903 461 aa17.94■□□□□ 0.46
CLN3-225ENST00000566824 RMND5BQ96G75 393 aaPredicted RBP17.94■□□□□ 0.46
CLN3-225ENST00000566824 PANX1Q96RD7 426 aa17.94■□□□□ 0.46
CLN3-225ENST00000566824 RABEP2Q9H5N1 569 aa17.94■□□□□ 0.46
CLN3-225ENST00000566824 PCDHGB4Q9UN71 923 aa17.94■□□□□ 0.46
CLN3-225ENST00000566824 PCNX3Q9H6A9 2034 aa17.93■□□□□ 0.46
CLN3-225ENST00000566824 GCN1Q92616 2671 aaKnown RBP17.93■□□□□ 0.46
CLN3-225ENST00000566824 OR6C70A6NIJ9 312 aa17.93■□□□□ 0.46
CLN3-225ENST00000566824 ADAM10O14672 748 aa17.93■□□□□ 0.46
CLN3-225ENST00000566824 ALOX5P09917 674 aa17.93■□□□□ 0.46
CLN3-225ENST00000566824 CASP3P42574 277 aa17.93■□□□□ 0.46
CLN3-225ENST00000566824 RFX3P48380 749 aa17.93■□□□□ 0.46
CLN3-225ENST00000566824 PRIM2P49643 509 aa17.93■□□□□ 0.46
CLN3-225ENST00000566824 MRPS22P82650 360 aaKnown RBP17.93■□□□□ 0.46
CLN3-225ENST00000566824 FOXK1P85037 733 aa17.93■□□□□ 0.46
CLN3-225ENST00000566824 UBAP2LQ14157 1087 aaKnown RBP17.93■□□□□ 0.46
CLN3-225ENST00000566824 CYP27C1Q4G0S4 372 aa17.93■□□□□ 0.46
CLN3-225ENST00000566824 SAXO2Q658L1 398 aa17.93■□□□□ 0.46
CLN3-225ENST00000566824 CDC73Q6P1J9 531 aa17.93■□□□□ 0.46
CLN3-225ENST00000566824 FIGNL1Q6PIW4 674 aa17.93■□□□□ 0.46
CLN3-225ENST00000566824 FAM180AQ6UWF9 173 aa17.93■□□□□ 0.46
CLN3-225ENST00000566824 OLIG3Q7RTU3 272 aa17.93■□□□□ 0.46
CLN3-225ENST00000566824 SIAH3Q8IW03 269 aa17.93■□□□□ 0.46
CLN3-225ENST00000566824 DND1Q8IYX4 353 aaKnown RBP17.93■□□□□ 0.46
CLN3-225ENST00000566824 ZFP62Q8NB50 900 aaPredicted RBP17.93■□□□□ 0.46
CLN3-225ENST00000566824 GTF2H4Q92759 462 aa17.93■□□□□ 0.46
CLN3-225ENST00000566824 OR7D2Q96RA2 312 aa17.93■□□□□ 0.46
CLN3-225ENST00000566824 SLC35A5Q9BS91 424 aa17.93■□□□□ 0.46
CLN3-225ENST00000566824 ACTRT3Q9BYD9 372 aa17.93■□□□□ 0.46
CLN3-225ENST00000566824 FAM107BQ9H098 131 aa17.93■□□□□ 0.46
CLN3-225ENST00000566824 GALNT9Q9HCQ5 603 aa17.93■□□□□ 0.46
CLN3-225ENST00000566824 Q9N2J8 555 aa17.93■□□□□ 0.46
CLN3-225ENST00000566824 ZNF407Q9C0G0 2248 aa17.93■□□□□ 0.46
CLN3-225ENST00000566824 MYO18BQ8IUG5 2567 aa17.92■□□□□ 0.46
CLN3-225ENST00000566824 FLNCQ14315 2725 aa17.92■□□□□ 0.46
CLN3-225ENST00000566824 TENM4Q6N022 2769 aa17.92■□□□□ 0.46
CLN3-225ENST00000566824 LRRC3CA6NJW4 275 aa17.92■□□□□ 0.46
CLN3-225ENST00000566824 FAM166BA8MTA8 275 aa17.92■□□□□ 0.46
CLN3-225ENST00000566824 CAPN14A8MX76 684 aa17.92■□□□□ 0.46
CLN3-225ENST00000566824 KLRC4-KLRK1H3BQV0 150 aa17.92■□□□□ 0.46
CLN3-225ENST00000566824 TP53I11O14683 189 aa17.92■□□□□ 0.46
CLN3-225ENST00000566824 ZNHIT1O43257 154 aa17.92■□□□□ 0.46
CLN3-225ENST00000566824 KCNK2O95069 426 aa17.92■□□□□ 0.46
CLN3-225ENST00000566824 HOXB9P17482 250 aaPredicted RBP17.92■□□□□ 0.46
CLN3-225ENST00000566824 TMED10P49755 219 aaKnown RBP17.92■□□□□ 0.46
CLN3-225ENST00000566824 TDGF1P3P51864 188 aa17.92■□□□□ 0.46
CLN3-225ENST00000566824 PAGE3Q5JUK9 113 aa17.92■□□□□ 0.46
CLN3-225ENST00000566824 FNDC7Q5VTL7 733 aa17.92■□□□□ 0.46
CLN3-225ENST00000566824 METTL21CQ5VZV1 264 aa17.92■□□□□ 0.46
CLN3-225ENST00000566824 ZCCHC12Q6PEW1 402 aa17.92■□□□□ 0.46
CLN3-225ENST00000566824 ZNF621Q6ZSS3 439 aa17.92■□□□□ 0.46
CLN3-225ENST00000566824 FAM110BQ8TC76 370 aa17.92■□□□□ 0.46
CLN3-225ENST00000566824 NR4A3Q92570 626 aa17.92■□□□□ 0.46
CLN3-225ENST00000566824 MOAP1Q96BY2 351 aa17.92■□□□□ 0.46
CLN3-225ENST00000566824 SPDL1Q96EA4 605 aa17.92■□□□□ 0.46
CLN3-225ENST00000566824 SLC35G5Q96KT7 338 aa17.92■□□□□ 0.46
CLN3-225ENST00000566824 ELAC2Q9BQ52 826 aaKnown RBP17.92■□□□□ 0.46
CLN3-225ENST00000566824 SLX1AQ9BQ83 275 aa17.92■□□□□ 0.46
CLN3-225ENST00000566824 FAM173AQ9BQD7 235 aa17.92■□□□□ 0.46
CLN3-225ENST00000566824 ANGPTL4Q9BY76 406 aa17.92■□□□□ 0.46
CLN3-225ENST00000566824 RTN4RQ9BZR6 473 aa17.92■□□□□ 0.46
CLN3-225ENST00000566824 PAIP1Q9H074 479 aaKnown RBP17.92■□□□□ 0.46
CLN3-225ENST00000566824 PIGUQ9H490 435 aa17.92■□□□□ 0.46
CLN3-225ENST00000566824 OLAHQ9NV23 265 aa17.92■□□□□ 0.46
CLN3-225ENST00000566824 CNIH4Q9P003 139 aa17.92■□□□□ 0.46
CLN3-225ENST00000566824 SLAMF8Q9P0V8 285 aa17.92■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 50.3 ms