RNA–Protein interactions for RNA: ENST00000565047.1

CLN3-213, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 461 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-213ENST00000565047 G6PC3Q9BUM1 346 aa13.53□□□□□ -0.24
CLN3-213ENST00000565047 MECRQ9BV79 373 aa13.53□□□□□ -0.24
CLN3-213ENST00000565047 TMEM109Q9BVC6 243 aa13.53□□□□□ -0.24
CLN3-213ENST00000565047 RTN4RQ9BZR6 473 aa13.53□□□□□ -0.24
CLN3-213ENST00000565047 ROPN1BQ9BZX4 212 aaPredicted RBP13.53□□□□□ -0.24
CLN3-213ENST00000565047 ROPN1Q9HAT0 212 aaPredicted RBP13.53□□□□□ -0.24
CLN3-213ENST00000565047 LRTM1Q9HBL6 345 aa13.53□□□□□ -0.24
CLN3-213ENST00000565047 SERHLQ9NQF3 203 aa13.53□□□□□ -0.24
CLN3-213ENST00000565047 GIMAP4Q9NUV9 329 aa13.53□□□□□ -0.24
CLN3-213ENST00000565047 TAS2R9Q9NYW1 312 aa13.53□□□□□ -0.24
CLN3-213ENST00000565047 NTMQ9P121 344 aa13.53□□□□□ -0.24
CLN3-213ENST00000565047 MAPRE3Q9UPY8 281 aa13.53□□□□□ -0.24
CLN3-213ENST00000565047 MRPS18CQ9Y3D5 142 aaKnown RBP13.53□□□□□ -0.24
CLN3-213ENST00000565047 L3MBTL1Q9Y468 752 aa13.53□□□□□ -0.24
CLN3-213ENST00000565047 MBD3L4A6NDZ8 208 aaPredicted RBP13.52□□□□□ -0.25
CLN3-213ENST00000565047 MBD3L3A6NE82 208 aaPredicted RBP13.52□□□□□ -0.25
CLN3-213ENST00000565047 MBD3L5A6NJ08 208 aaPredicted RBP13.52□□□□□ -0.25
CLN3-213ENST00000565047 CD8B2A6NJW9 211 aa13.52□□□□□ -0.25
CLN3-213ENST00000565047 HSPB2A8KAH6 182 aa13.52□□□□□ -0.25
CLN3-213ENST00000565047 TMEM233B4DJY2 109 aa13.52□□□□□ -0.25
CLN3-213ENST00000565047 FAM47E-STBD1D6RA91 191 aa13.52□□□□□ -0.25
CLN3-213ENST00000565047 SYT5O00445 386 aa13.52□□□□□ -0.25
CLN3-213ENST00000565047 TYROBPO43914 113 aa13.52□□□□□ -0.25
CLN3-213ENST00000565047 FADS1O60427 444 aa13.52□□□□□ -0.25
CLN3-213ENST00000565047 NPHS1O60500 1241 aa13.52□□□□□ -0.25
CLN3-213ENST00000565047 ACTL6AO96019 429 aa13.52□□□□□ -0.25
CLN3-213ENST00000565047 ETV4P43268 484 aa13.52□□□□□ -0.25
CLN3-213ENST00000565047 ZNF136P52737 540 aa13.52□□□□□ -0.25
CLN3-213ENST00000565047 TLE4Q04727 773 aa13.52□□□□□ -0.25
CLN3-213ENST00000565047 GAB1Q13480 694 aa13.52□□□□□ -0.25
CLN3-213ENST00000565047 EFR3AQ14156 821 aa13.52□□□□□ -0.25
CLN3-213ENST00000565047 HSPB2Q16082 182 aa13.52□□□□□ -0.25
CLN3-213ENST00000565047 SLC25A35Q3KQZ1 300 aa13.52□□□□□ -0.25
CLN3-213ENST00000565047 ZNF385BQ569K4 471 aa13.52□□□□□ -0.25
CLN3-213ENST00000565047 LARP4Q71RC2 724 aaKnown RBP eCLIP13.52□□□□□ -0.25
CLN3-213ENST00000565047 LACC1Q8IV20 430 aa13.52□□□□□ -0.25
CLN3-213ENST00000565047 PM20D2Q8IYS1 436 aa13.52□□□□□ -0.25
CLN3-213ENST00000565047 MBD3L2Q8NHZ7 208 aaPredicted RBP13.52□□□□□ -0.25
CLN3-213ENST00000565047 ZPLD1Q8TCW7 415 aa13.52□□□□□ -0.25
CLN3-213ENST00000565047 TCP10LQ8TDR4 215 aa13.52□□□□□ -0.25
CLN3-213ENST00000565047 ABTB1Q969K4 478 aaPredicted RBP13.52□□□□□ -0.25
CLN3-213ENST00000565047 FAM111AQ96PZ2 611 aa13.52□□□□□ -0.25
CLN3-213ENST00000565047 UCN2Q96RP3 112 aa13.52□□□□□ -0.25
CLN3-213ENST00000565047 CCT7Q99832 543 aa13.52□□□□□ -0.25
CLN3-213ENST00000565047 SH3GL2Q99962 352 aa13.52□□□□□ -0.25
CLN3-213ENST00000565047 LMF2Q9BU23 707 aaKnown RBP13.52□□□□□ -0.25
CLN3-213ENST00000565047 MIEF1Q9NQG6 463 aa13.52□□□□□ -0.25
CLN3-213ENST00000565047 KLRF1Q9NZS2 232 aa13.52□□□□□ -0.25
CLN3-213ENST00000565047 MID2Q9UJV3 735 aa13.52□□□□□ -0.25
CLN3-213ENST00000565047 WIF1Q9Y5W5 379 aa13.52□□□□□ -0.25
CLN3-213ENST00000565047 INTS1Q8N201 2190 aaKnown RBP13.51□□□□□ -0.25
CLN3-213ENST00000565047 MED12Q93074 2177 aa13.51□□□□□ -0.25
CLN3-213ENST00000565047 RGS14O43566 566 aa13.51□□□□□ -0.25
CLN3-213ENST00000565047 COQ9O75208 318 aa13.51□□□□□ -0.25
CLN3-213ENST00000565047 CRCPO75575 148 aa13.51□□□□□ -0.25
CLN3-213ENST00000565047 LINC00032P0C843 101 aa13.51□□□□□ -0.25
CLN3-213ENST00000565047 CYP4B1P13584 511 aa13.51□□□□□ -0.25
CLN3-213ENST00000565047 CAPN3P20807 821 aa13.51□□□□□ -0.25
CLN3-213ENST00000565047 LHX2P50458 406 aa13.51□□□□□ -0.25
CLN3-213ENST00000565047 B3GALT5-AS1P59052 145 aa13.51□□□□□ -0.25
CLN3-213ENST00000565047 FBXL19-AS1Q494R0 122 aa13.51□□□□□ -0.25
CLN3-213ENST00000565047 CYP27C1Q4G0S4 372 aa13.51□□□□□ -0.25
CLN3-213ENST00000565047 XKR7Q5GH72 579 aa13.51□□□□□ -0.25
CLN3-213ENST00000565047 EXOSC6Q5RKV6 272 aaKnown RBP13.51□□□□□ -0.25
CLN3-213ENST00000565047 CES4AQ5XG92 561 aa13.51□□□□□ -0.25
CLN3-213ENST00000565047 ANKRD26P1Q6NSI1 321 aa13.51□□□□□ -0.25
CLN3-213ENST00000565047 EMBQ6PCB8 327 aa13.51□□□□□ -0.25
CLN3-213ENST00000565047 ZNF551Q7Z340 670 aaPredicted RBP13.51□□□□□ -0.25
CLN3-213ENST00000565047 FADS6Q8N9I5 356 aa13.51□□□□□ -0.25
CLN3-213ENST00000565047 CDC26Q8NHZ8 85 aa13.51□□□□□ -0.25
CLN3-213ENST00000565047 EFHD2Q96C19 240 aaPredicted RBP13.51□□□□□ -0.25
CLN3-213ENST00000565047 CALHM2Q9HA72 323 aa13.51□□□□□ -0.25
CLN3-213ENST00000565047 FLRT3Q9NZU0 649 aa13.51□□□□□ -0.25
CLN3-213ENST00000565047 ZNF629Q9UEG4 869 aaPredicted RBP13.51□□□□□ -0.25
CLN3-213ENST00000565047 KCNN3Q9UGI6 736 aa13.51□□□□□ -0.25
CLN3-213ENST00000565047 BAIAP2L1Q9UHR4 511 aa13.51□□□□□ -0.25
CLN3-213ENST00000565047 TRAF6Q9Y4K3 522 aa13.51□□□□□ -0.25
CLN3-213ENST00000565047 GIMAP1-GIMAP5A0A087WTJ2 511 aa13.5□□□□□ -0.25
CLN3-213ENST00000565047 FAM221AA4D161 298 aa13.5□□□□□ -0.25
CLN3-213ENST00000565047 SPAG7O75391 227 aa13.5□□□□□ -0.25
CLN3-213ENST00000565047 IGKV1D-16P01601 117 aa13.5□□□□□ -0.25
CLN3-213ENST00000565047 NEFHP12036 1026 aa13.5□□□□□ -0.25
CLN3-213ENST00000565047 BCKDHAP12694 445 aa13.5□□□□□ -0.25
CLN3-213ENST00000565047 POU3F2P20265 443 aaPredicted RBP13.5□□□□□ -0.25
CLN3-213ENST00000565047 GRK2P25098 689 aa13.5□□□□□ -0.25
CLN3-213ENST00000565047 SRD5A2P31213 254 aa13.5□□□□□ -0.25
CLN3-213ENST00000565047 TESK1Q15569 626 aa13.5□□□□□ -0.25
CLN3-213ENST00000565047 OR5M10Q6IEU7 315 aa13.5□□□□□ -0.25
CLN3-213ENST00000565047 WDR53Q7Z5U6 358 aaPredicted RBP13.5□□□□□ -0.25
CLN3-213ENST00000565047 TRIM42Q8IWZ5 723 aa13.5□□□□□ -0.25
CLN3-213ENST00000565047 CLYBLQ8N0X4 340 aa13.5□□□□□ -0.25
CLN3-213ENST00000565047 MREGQ8N565 214 aa13.5□□□□□ -0.25
CLN3-213ENST00000565047 CIDECQ96AQ7 238 aaPredicted RBP13.5□□□□□ -0.25
CLN3-213ENST00000565047 GIMAP5Q96F15 307 aa13.5□□□□□ -0.25
CLN3-213ENST00000565047 C3orf30Q96M34 536 aa13.5□□□□□ -0.25
CLN3-213ENST00000565047 REEP4Q9H6H4 257 aa13.5□□□□□ -0.25
CLN3-213ENST00000565047 JKAMPQ9P055 326 aa13.5□□□□□ -0.25
CLN3-213ENST00000565047 CBLCQ9ULV8 474 aa13.5□□□□□ -0.25
CLN3-213ENST00000565047 TMED5Q9Y3A6 229 aa13.5□□□□□ -0.25
CLN3-213ENST00000565047 PIP5K1BO14986 540 aa13.49□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms