RNA–Protein interactions for RNA: ENST00000564172.1

GDE1-203, Transcript of glycerophosphodiester phosphodiesterase 1, humanhuman

TSL 1 (best)

Gene GDE1, Length 2,238 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GDE1-203ENST00000564172 MTX3Q5HYI7 312 aa16.59■□□□□ 0.25
GDE1-203ENST00000564172 PIWIL3Q7Z3Z3 882 aaKnown RBP16.59■□□□□ 0.25
GDE1-203ENST00000564172 BPIFB6Q8NFQ5 453 aa16.59■□□□□ 0.25
GDE1-203ENST00000564172 OR5T3Q8NGG3 340 aa16.59■□□□□ 0.25
GDE1-203ENST00000564172 C10orf90Q96M02 699 aa16.59■□□□□ 0.25
GDE1-203ENST00000564172 BBS4Q96RK4 519 aa16.59■□□□□ 0.25
GDE1-203ENST00000564172 NUDT22Q9BRQ3 303 aa16.59■□□□□ 0.25
GDE1-203ENST00000564172 SIRT3Q9NTG7 399 aaPredicted RBP16.59■□□□□ 0.25
GDE1-203ENST00000564172 B3GNT2Q9NY97 397 aa16.59■□□□□ 0.25
GDE1-203ENST00000564172 SPTBP11277 2137 aa16.59■□□□□ 0.25
GDE1-203ENST00000564172 MYO1GB0I1T2 1018 aa16.58■□□□□ 0.25
GDE1-203ENST00000564172 CXCR6O00574 342 aa16.58■□□□□ 0.25
GDE1-203ENST00000564172 HSD11B2P80365 405 aa16.58■□□□□ 0.25
GDE1-203ENST00000564172 KCNAB1Q14722 419 aa16.58■□□□□ 0.25
GDE1-203ENST00000564172 ZNF750Q32MQ0 723 aa16.58■□□□□ 0.25
GDE1-203ENST00000564172 CPZQ66K79 652 aa16.58■□□□□ 0.25
GDE1-203ENST00000564172 XAF1Q6GPH4 301 aa16.58■□□□□ 0.25
GDE1-203ENST00000564172 ANGPTL8Q6UXH0 198 aa16.58■□□□□ 0.25
GDE1-203ENST00000564172 SLC16A12Q6ZSM3 486 aa16.58■□□□□ 0.25
GDE1-203ENST00000564172 SPATC1Q76KD6 591 aa16.58■□□□□ 0.25
GDE1-203ENST00000564172 LIX1LQ8IVB5 337 aa16.58■□□□□ 0.25
GDE1-203ENST00000564172 UBQLNLQ8IYU4 475 aa16.58■□□□□ 0.25
GDE1-203ENST00000564172 SHISA5Q8N114 240 aa16.58■□□□□ 0.25
GDE1-203ENST00000564172 SVOPQ8N4V2 548 aa16.58■□□□□ 0.25
GDE1-203ENST00000564172 PSMA8Q8TAA3 256 aa16.58■□□□□ 0.25
GDE1-203ENST00000564172 FANK1Q8TC84 345 aa16.58■□□□□ 0.25
GDE1-203ENST00000564172 LOXL4Q96JB6 756 aa16.58■□□□□ 0.25
GDE1-203ENST00000564172 LHPPQ9H008 270 aa16.58■□□□□ 0.25
GDE1-203ENST00000564172 CHST8Q9H2A9 424 aa16.58■□□□□ 0.25
GDE1-203ENST00000564172 ZNF556Q9HAH1 456 aa16.58■□□□□ 0.25
GDE1-203ENST00000564172 ZC4H2Q9NQZ6 224 aa16.58■□□□□ 0.25
GDE1-203ENST00000564172 MKL2Q9ULH7 1088 aa16.58■□□□□ 0.25
GDE1-203ENST00000564172 GRIP1Q9Y3R0 1128 aa16.58■□□□□ 0.25
GDE1-203ENST00000564172 DHRS12A0PJE2 317 aa16.58■□□□□ 0.24
GDE1-203ENST00000564172 SGK494L7N484 410 aa16.58■□□□□ 0.24
GDE1-203ENST00000564172 MED26O95402 600 aa16.58■□□□□ 0.24
GDE1-203ENST00000564172 C8orf89P0DMQ9 161 aa16.58■□□□□ 0.24
GDE1-203ENST00000564172 NTSP30990 170 aa16.58■□□□□ 0.24
GDE1-203ENST00000564172 TLX1P31314 330 aaPredicted RBP16.58■□□□□ 0.24
GDE1-203ENST00000564172 CHI3L1P36222 383 aaPredicted RBP16.58■□□□□ 0.24
GDE1-203ENST00000564172 NCBP2P52298 156 aaKnown RBP eCLIP16.58■□□□□ 0.24
GDE1-203ENST00000564172 TOP3AQ13472 1001 aaPredicted RBP16.58■□□□□ 0.24
GDE1-203ENST00000564172 SQSTM1Q13501 440 aa16.58■□□□□ 0.24
GDE1-203ENST00000564172 MFSD13AQ14CX5 517 aa16.58■□□□□ 0.24
GDE1-203ENST00000564172 CEBPEQ15744 281 aa16.58■□□□□ 0.24
GDE1-203ENST00000564172 MAPK11Q15759 364 aa16.58■□□□□ 0.24
GDE1-203ENST00000564172 TCTE1Q5JU00 501 aa16.58■□□□□ 0.24
GDE1-203ENST00000564172 XKRXQ6PP77 449 aa16.58■□□□□ 0.24
GDE1-203ENST00000564172 PTOV1Q86YD1 416 aa16.58■□□□□ 0.24
GDE1-203ENST00000564172 ZZZ3Q8IYH5 903 aa16.58■□□□□ 0.24
GDE1-203ENST00000564172 CCDC116Q8IYX3 515 aa16.58■□□□□ 0.24
GDE1-203ENST00000564172 OR52N2Q8NGI0 321 aa16.58■□□□□ 0.24
GDE1-203ENST00000564172 OR9A4Q8NGU2 314 aa16.58■□□□□ 0.24
GDE1-203ENST00000564172 SUN3Q8TAQ9 357 aa16.58■□□□□ 0.24
GDE1-203ENST00000564172 ZNF681Q96N22 645 aa16.58■□□□□ 0.24
GDE1-203ENST00000564172 DACH2Q96NX9 599 aa16.58■□□□□ 0.24
GDE1-203ENST00000564172 DPH2Q9BQC3 489 aaPredicted RBP16.58■□□□□ 0.24
GDE1-203ENST00000564172 TMEM121BQ9BXQ6 578 aaPredicted RBP16.58■□□□□ 0.24
GDE1-203ENST00000564172 EPS8L2Q9H6S3 715 aa16.58■□□□□ 0.24
GDE1-203ENST00000564172 NECTIN3Q9NQS3 549 aa16.58■□□□□ 0.24
GDE1-203ENST00000564172 CCM2LQ9NUG4 571 aaPredicted RBP16.58■□□□□ 0.24
GDE1-203ENST00000564172 EMC3Q9P0I2 261 aa16.58■□□□□ 0.24
GDE1-203ENST00000564172 ENTPD4Q9Y227 616 aa16.58■□□□□ 0.24
GDE1-203ENST00000564172 KLF2Q9Y5W3 355 aaPredicted RBP16.58■□□□□ 0.24
GDE1-203ENST00000564172 A0A1W2PS29 197 aa16.57■□□□□ 0.24
GDE1-203ENST00000564172 FAM86C2PA6NEL3 165 aa16.57■□□□□ 0.24
GDE1-203ENST00000564172 SOCS2O14508 198 aa16.57■□□□□ 0.24
GDE1-203ENST00000564172 RETP07949 1114 aa16.57■□□□□ 0.24
GDE1-203ENST00000564172 NUDT7P0C024 238 aa16.57■□□□□ 0.24
GDE1-203ENST00000564172 FEN1P39748 380 aaKnown RBP16.57■□□□□ 0.24
GDE1-203ENST00000564172 ARL4DP49703 201 aa16.57■□□□□ 0.24
GDE1-203ENST00000564172 DUSP2Q05923 314 aa16.57■□□□□ 0.24
GDE1-203ENST00000564172 NDUFA9Q16795 377 aa16.57■□□□□ 0.24
GDE1-203ENST00000564172 VMACQ2NL98 169 aa16.57■□□□□ 0.24
GDE1-203ENST00000564172 COX20Q5RI15 118 aa16.57■□□□□ 0.24
GDE1-203ENST00000564172 TMEM71Q6P5X7 295 aa16.57■□□□□ 0.24
GDE1-203ENST00000564172 PRSS42Q7Z5A4 293 aa16.57■□□□□ 0.24
GDE1-203ENST00000564172 SLC41A2Q96JW4 573 aa16.57■□□□□ 0.24
GDE1-203ENST00000564172 SPRTNQ9H040 489 aaPredicted RBP16.57■□□□□ 0.24
GDE1-203ENST00000564172 FANCFQ9NPI8 374 aa16.57■□□□□ 0.24
GDE1-203ENST00000564172 GLTPQ9NZD2 209 aa16.57■□□□□ 0.24
GDE1-203ENST00000564172 IFT80Q9P2H3 777 aaPredicted RBP16.57■□□□□ 0.24
GDE1-203ENST00000564172 R4GN57 208 aa16.57■□□□□ 0.24
GDE1-203ENST00000564172 RNF103-CHMP3A0A140T963 221 aa16.57■□□□□ 0.24
GDE1-203ENST00000564172 HYKKA2RU49 373 aa16.57■□□□□ 0.24
GDE1-203ENST00000564172 FOXS1O43638 330 aa16.57■□□□□ 0.24
GDE1-203ENST00000564172 CSNK2A2P19784 350 aaPredicted RBP16.57■□□□□ 0.24
GDE1-203ENST00000564172 IL10P22301 178 aa16.57■□□□□ 0.24
GDE1-203ENST00000564172 POLR2IP36954 125 aaKnown RBP16.57■□□□□ 0.24
GDE1-203ENST00000564172 CRATP43155 626 aa16.57■□□□□ 0.24
GDE1-203ENST00000564172 CASP9P55211 416 aa16.57■□□□□ 0.24
GDE1-203ENST00000564172 SIM1P81133 766 aaPredicted RBP16.57■□□□□ 0.24
GDE1-203ENST00000564172 FAM53BQ14153 422 aa16.57■□□□□ 0.24
GDE1-203ENST00000564172 TBRG1Q3YBR2 411 aa16.57■□□□□ 0.24
GDE1-203ENST00000564172 TCEAL6Q6IPX3 200 aa16.57■□□□□ 0.24
GDE1-203ENST00000564172 HMBOX1Q6NT76 420 aa16.57■□□□□ 0.24
GDE1-203ENST00000564172 ERICH5Q6P6B1 374 aa16.57■□□□□ 0.24
GDE1-203ENST00000564172 NOXA1Q86UR1 476 aa16.57■□□□□ 0.24
GDE1-203ENST00000564172 RNF130Q86XS8 419 aa16.57■□□□□ 0.24
GDE1-203ENST00000564172 CA13Q8N1Q1 262 aa16.57■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 39.6 ms