RNA–Protein interactions for RNA: ENST00000563984.1

VPS35-205, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 775 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-205ENST00000563984 PFKFB1P16118 471 aa4.75□□□□□ -1.65
VPS35-205ENST00000563984 ZNF18P17022 549 aa4.75□□□□□ -1.65
VPS35-205ENST00000563984 CEBPBP17676 345 aa4.75□□□□□ -1.65
VPS35-205ENST00000563984 GLRA1P23415 457 aa4.75□□□□□ -1.65
VPS35-205ENST00000563984 PRKCHP24723 683 aa4.75□□□□□ -1.65
VPS35-205ENST00000563984 CALML3P27482 149 aa4.75□□□□□ -1.65
VPS35-205ENST00000563984 DPP4P27487 766 aa4.75□□□□□ -1.65
VPS35-205ENST00000563984 FDFT1P37268 417 aa4.75□□□□□ -1.65
VPS35-205ENST00000563984 VHLP40337 213 aa4.75□□□□□ -1.65
VPS35-205ENST00000563984 MAP3K8P41279 467 aa4.75□□□□□ -1.65
VPS35-205ENST00000563984 MAGEA3P43357 314 aa4.75□□□□□ -1.65
VPS35-205ENST00000563984 NAMPTP43490 491 aa4.75□□□□□ -1.65
VPS35-205ENST00000563984 BRCC3P46736 316 aa4.75□□□□□ -1.65
VPS35-205ENST00000563984 CXCR3P49682 368 aa4.75□□□□□ -1.65
VPS35-205ENST00000563984 CCR8P51685 355 aa4.75□□□□□ -1.65
VPS35-205ENST00000563984 PRKXP51817 358 aa4.75□□□□□ -1.65
VPS35-205ENST00000563984 ARSFP54793 590 aa4.75□□□□□ -1.65
VPS35-205ENST00000563984 ADPRHP54922 357 aa4.75□□□□□ -1.65
VPS35-205ENST00000563984 MLLT10P55197 1068 aa4.75□□□□□ -1.65
VPS35-205ENST00000563984 MYL7Q01449 175 aa4.75□□□□□ -1.65
VPS35-205ENST00000563984 CDR2Q01850 454 aa4.75□□□□□ -1.65
VPS35-205ENST00000563984 SP3Q02447 781 aa4.75□□□□□ -1.65
VPS35-205ENST00000563984 ZNF91Q05481 1191 aa4.75□□□□□ -1.65
VPS35-205ENST00000563984 FOXM1Q08050 763 aa4.75□□□□□ -1.65
VPS35-205ENST00000563984 BST1Q10588 318 aa4.75□□□□□ -1.65
VPS35-205ENST00000563984 PMPCAQ10713 525 aa4.75□□□□□ -1.65
VPS35-205ENST00000563984 AQP6Q13520 282 aa4.75□□□□□ -1.65
VPS35-205ENST00000563984 BAATQ14032 418 aaPredicted RBP4.75□□□□□ -1.65
VPS35-205ENST00000563984 SELPLGQ14242 412 aa4.75□□□□□ -1.65
VPS35-205ENST00000563984 PTPRCAPQ14761 206 aa4.75□□□□□ -1.65
VPS35-205ENST00000563984 ACOX1Q15067 660 aa4.75□□□□□ -1.65
VPS35-205ENST00000563984 SLC9A3R2Q15599 337 aa4.75□□□□□ -1.65
VPS35-205ENST00000563984 SLC1A5Q15758 541 aa4.75□□□□□ -1.65
VPS35-205ENST00000563984 CCDC6Q16204 474 aa4.75□□□□□ -1.65
VPS35-205ENST00000563984 BSXQ3C1V8 233 aa4.75□□□□□ -1.65
VPS35-205ENST00000563984 RNF212Q495C1 297 aa4.75□□□□□ -1.65
VPS35-205ENST00000563984 ARHGAP15Q53QZ3 475 aa4.75□□□□□ -1.65
VPS35-205ENST00000563984 TMEM41BQ5BJD5 291 aa4.75□□□□□ -1.65
VPS35-205ENST00000563984 C9orf50Q5SZB4 431 aa4.75□□□□□ -1.65
VPS35-205ENST00000563984 CYB5R2Q6BCY4 276 aa4.75□□□□□ -1.65
VPS35-205ENST00000563984 ABLIM2Q6H8Q1 611 aa4.75□□□□□ -1.65
VPS35-205ENST00000563984 NADSYN1Q6IA69 706 aa4.75□□□□□ -1.65
VPS35-205ENST00000563984 NCEH1Q6PIU2 408 aa4.75□□□□□ -1.65
VPS35-205ENST00000563984 FIGLAQ6QHK4 219 aa4.75□□□□□ -1.65
VPS35-205ENST00000563984 ZNF767PQ75MW2 155 aa4.75□□□□□ -1.65
VPS35-205ENST00000563984 GPR180Q86V85 440 aa4.75□□□□□ -1.65
VPS35-205ENST00000563984 PAQR7Q86WK9 346 aa4.75□□□□□ -1.65
VPS35-205ENST00000563984 PHF13Q86YI8 300 aaPredicted RBP4.75□□□□□ -1.65
VPS35-205ENST00000563984 RIBC1Q8N443 379 aaPredicted RBP4.75□□□□□ -1.65
VPS35-205ENST00000563984 WDSUB1Q8N9V3 476 aa4.75□□□□□ -1.65
VPS35-205ENST00000563984 DBF4BQ8NFT6 615 aa4.75□□□□□ -1.65
VPS35-205ENST00000563984 OR4D6Q8NGJ1 314 aa4.75□□□□□ -1.65
VPS35-205ENST00000563984 GRAPLQ8TC17 118 aaPredicted RBP4.75□□□□□ -1.65
VPS35-205ENST00000563984 ABHD5Q8WTS1 349 aa4.75□□□□□ -1.65
VPS35-205ENST00000563984 CA5BP1Q8WTZ4 195 aa4.75□□□□□ -1.65
VPS35-205ENST00000563984 ARNTL2Q8WYA1 636 aa4.75□□□□□ -1.65
VPS35-205ENST00000563984 SMPDL3AQ92484 453 aa4.75□□□□□ -1.65
VPS35-205ENST00000563984 GTF2H4Q92759 462 aa4.75□□□□□ -1.65
VPS35-205ENST00000563984 COQ8BQ96D53 544 aa4.75□□□□□ -1.65
VPS35-205ENST00000563984 OR5B2Q96R09 309 aa4.75□□□□□ -1.65
VPS35-205ENST00000563984 GPA33Q99795 319 aa4.75□□□□□ -1.65
VPS35-205ENST00000563984 UTP23Q9BRU9 249 aaKnown RBP4.75□□□□□ -1.65
VPS35-205ENST00000563984 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP4.75□□□□□ -1.65
VPS35-205ENST00000563984 FNDC11Q9BVV2 318 aa4.75□□□□□ -1.65
VPS35-205ENST00000563984 GTPBP2Q9BX10 602 aaKnown RBP4.75□□□□□ -1.65
VPS35-205ENST00000563984 TM6SF2Q9BZW4 377 aa4.75□□□□□ -1.65
VPS35-205ENST00000563984 SLC38A1Q9H2H9 487 aa4.75□□□□□ -1.65
VPS35-205ENST00000563984 SLC32A1Q9H598 525 aa4.75□□□□□ -1.65
VPS35-205ENST00000563984 MED20Q9H944 212 aa4.75□□□□□ -1.65
VPS35-205ENST00000563984 LPAR2Q9HBW0 351 aa4.75□□□□□ -1.65
VPS35-205ENST00000563984 FBXO8Q9NRD0 319 aa4.75□□□□□ -1.65
VPS35-205ENST00000563984 IMP3Q9NV31 184 aaKnown RBP4.75□□□□□ -1.65
VPS35-205ENST00000563984 DPP3Q9NY33 737 aa4.75□□□□□ -1.65
VPS35-205ENST00000563984 ELOVL5Q9NYP7 299 aa4.75□□□□□ -1.65
VPS35-205ENST00000563984 USE1Q9NZ43 259 aa4.75□□□□□ -1.65
VPS35-205ENST00000563984 NLGN3Q9NZ94 848 aa4.75□□□□□ -1.65
VPS35-205ENST00000563984 TREM2Q9NZC2 230 aa4.75□□□□□ -1.65
VPS35-205ENST00000563984 AHSPQ9NZD4 102 aa4.75□□□□□ -1.65
VPS35-205ENST00000563984 SPG21Q9NZD8 308 aa4.75□□□□□ -1.65
VPS35-205ENST00000563984 SEMA5BQ9P283 1151 aa4.75□□□□□ -1.65
VPS35-205ENST00000563984 SLC12A6Q9UHW9 1150 aa4.75□□□□□ -1.65
VPS35-205ENST00000563984 CRLS1Q9UJA2 301 aa4.75□□□□□ -1.65
VPS35-205ENST00000563984 POU2F3Q9UKI9 436 aa4.75□□□□□ -1.65
VPS35-205ENST00000563984 NDRG2Q9UN36 371 aaKnown RBP4.75□□□□□ -1.65
VPS35-205ENST00000563984 PPP1R3CQ9UQK1 317 aa4.75□□□□□ -1.65
VPS35-205ENST00000563984 NIP7Q9Y221 180 aaKnown RBP eCLIP4.75□□□□□ -1.65
VPS35-205ENST00000563984 SLC22A13Q9Y226 551 aa4.75□□□□□ -1.65
VPS35-205ENST00000563984 CA5BQ9Y2D0 317 aa4.75□□□□□ -1.65
VPS35-205ENST00000563984 MMACHCQ9Y4U1 282 aa4.75□□□□□ -1.65
VPS35-205ENST00000563984 LIPGQ9Y5X9 500 aa4.75□□□□□ -1.65
VPS35-205ENST00000563984 MSH6P52701 1360 aa4.75□□□□□ -1.65
VPS35-205ENST00000563984 TCOF1Q13428 1488 aaKnown RBP4.75□□□□□ -1.65
VPS35-205ENST00000563984 FYCO1Q9BQS8 1478 aa4.75□□□□□ -1.65
VPS35-205ENST00000563984 CCDC187A0A096LP49 1063 aa4.74□□□□□ -1.65
VPS35-205ENST00000563984 A0A1B0GV72 72 aa4.74□□□□□ -1.65
VPS35-205ENST00000563984 A0A1W2PPC1 479 aa4.74□□□□□ -1.65
VPS35-205ENST00000563984 CCDC160A6NGH7 325 aa4.74□□□□□ -1.65
VPS35-205ENST00000563984 ARPC3O15145 178 aa4.74□□□□□ -1.65
VPS35-205ENST00000563984 CHADO15335 359 aa4.74□□□□□ -1.65
VPS35-205ENST00000563984 KLK10O43240 276 aa4.74□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms