RNA–Protein interactions for RNA: ENST00000563874.5

CLN3-210, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 3,081 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-210ENST00000563874 CACUL1Q86Y37 369 aa12.4□□□□□ -0.42
CLN3-210ENST00000563874 NRSN1Q8IZ57 195 aa12.4□□□□□ -0.42
CLN3-210ENST00000563874 ARIH2OSQ8N7S6 290 aa12.4□□□□□ -0.42
CLN3-210ENST00000563874 ZNF485Q8NCK3 441 aa12.4□□□□□ -0.42
CLN3-210ENST00000563874 OR5H6Q8NGV6 325 aa12.4□□□□□ -0.42
CLN3-210ENST00000563874 OR4Q3Q8NH05 313 aa12.4□□□□□ -0.42
CLN3-210ENST00000563874 RGMAQ96B86 450 aa12.4□□□□□ -0.42
CLN3-210ENST00000563874 ARMC5Q96C12 935 aa12.4□□□□□ -0.42
CLN3-210ENST00000563874 SECISBP2Q96T21 854 aaKnown RBP12.4□□□□□ -0.42
CLN3-210ENST00000563874 SMAD5Q99717 465 aaKnown RBP12.4□□□□□ -0.42
CLN3-210ENST00000563874 SOSTQ9BQB4 213 aa12.4□□□□□ -0.42
CLN3-210ENST00000563874 RHBGQ9H310 441 aa12.4□□□□□ -0.42
CLN3-210ENST00000563874 DPEP2Q9H4A9 486 aa12.4□□□□□ -0.42
CLN3-210ENST00000563874 KLHL31Q9H511 634 aa12.4□□□□□ -0.42
CLN3-210ENST00000563874 ISG20L2Q9H9L3 353 aaKnown RBP12.4□□□□□ -0.42
CLN3-210ENST00000563874 TEKT2Q9UIF3 430 aa12.4□□□□□ -0.42
CLN3-210ENST00000563874 MYO10Q9HD67 2058 aa12.4□□□□□ -0.42
CLN3-210ENST00000563874 MEN1O00255 615 aa12.39□□□□□ -0.43
CLN3-210ENST00000563874 LANCL1O43813 399 aa12.39□□□□□ -0.43
CLN3-210ENST00000563874 LILRB3O75022 631 aa12.39□□□□□ -0.43
CLN3-210ENST00000563874 PAHP00439 452 aa12.39□□□□□ -0.43
CLN3-210ENST00000563874 FGBP02675 491 aa12.39□□□□□ -0.43
CLN3-210ENST00000563874 C1QBP02746 253 aa12.39□□□□□ -0.43
CLN3-210ENST00000563874 ACP5P13686 325 aa12.39□□□□□ -0.43
CLN3-210ENST00000563874 HOXB3P14651 431 aaPredicted RBP12.39□□□□□ -0.43
CLN3-210ENST00000563874 ELK1P19419 428 aa12.39□□□□□ -0.43
CLN3-210ENST00000563874 GSTM3P21266 225 aa12.39□□□□□ -0.43
CLN3-210ENST00000563874 CLDN20P56880 219 aa12.39□□□□□ -0.43
CLN3-210ENST00000563874 TCEAL5Q5H9L2 206 aa12.39□□□□□ -0.43
CLN3-210ENST00000563874 NR2C2APQ86WQ0 139 aa12.39□□□□□ -0.43
CLN3-210ENST00000563874 NKAIN4Q8IVV8 208 aa12.39□□□□□ -0.43
CLN3-210ENST00000563874 DCUN1D3Q8IWE4 304 aa12.39□□□□□ -0.43
CLN3-210ENST00000563874 DNAJC5GQ8N7S2 189 aa12.39□□□□□ -0.43
CLN3-210ENST00000563874 SLC37A3Q8NCC5 494 aa12.39□□□□□ -0.43
CLN3-210ENST00000563874 DUSP18Q8NEJ0 188 aa12.39□□□□□ -0.43
CLN3-210ENST00000563874 ARRDC3Q96B67 414 aa12.39□□□□□ -0.43
CLN3-210ENST00000563874 ZSWIM3Q96MP5 696 aa12.39□□□□□ -0.43
CLN3-210ENST00000563874 XKR8Q9H6D3 395 aa12.39□□□□□ -0.43
CLN3-210ENST00000563874 SLC35C2Q9NQQ7 365 aa12.39□□□□□ -0.43
CLN3-210ENST00000563874 DENND4CQ5VZ89 1909 aa12.39□□□□□ -0.43
CLN3-210ENST00000563874 ZC3H12DA2A288 527 aaKnown RBP12.39□□□□□ -0.43
CLN3-210ENST00000563874 INMT-MINDY4F8WBC2 141 aa12.39□□□□□ -0.43
CLN3-210ENST00000563874 PROM1O43490 865 aa12.39□□□□□ -0.43
CLN3-210ENST00000563874 HLA-DQB1P01920 261 aa12.39□□□□□ -0.43
CLN3-210ENST00000563874 HLA-DPB1P04440 258 aa12.39□□□□□ -0.43
CLN3-210ENST00000563874 TRHRP34981 398 aaPredicted RBP12.39□□□□□ -0.43
CLN3-210ENST00000563874 RRAS2P62070 204 aaPredicted RBP12.39□□□□□ -0.43
CLN3-210ENST00000563874 ZNF311Q5JNZ3 666 aa12.39□□□□□ -0.43
CLN3-210ENST00000563874 KIAA1211LQ6NV74 962 aa12.39□□□□□ -0.43
CLN3-210ENST00000563874 ING5Q8WYH8 240 aa12.39□□□□□ -0.43
CLN3-210ENST00000563874 PPP1R16AQ96I34 528 aa12.39□□□□□ -0.43
CLN3-210ENST00000563874 DDX31Q9H8H2 851 aaKnown RBP12.39□□□□□ -0.43
CLN3-210ENST00000563874 MRPS18AQ9NVS2 196 aaKnown RBP12.39□□□□□ -0.43
CLN3-210ENST00000563874 EXTL2Q9UBQ6 330 aa12.39□□□□□ -0.43
CLN3-210ENST00000563874 PCDHGB7Q9Y5F8 929 aa12.39□□□□□ -0.43
CLN3-210ENST00000563874 IRAK3Q9Y616 596 aa12.39□□□□□ -0.43
CLN3-210ENST00000563874 CHD7Q9P2D1 2997 aa12.39□□□□□ -0.43
CLN3-210ENST00000563874 GTPBP1O00178 669 aaKnown RBP12.39□□□□□ -0.43
CLN3-210ENST00000563874 SOCS6O14544 535 aa12.39□□□□□ -0.43
CLN3-210ENST00000563874 ORC5O43913 435 aa12.39□□□□□ -0.43
CLN3-210ENST00000563874 CXCL14O95715 111 aa12.39□□□□□ -0.43
CLN3-210ENST00000563874 DUSP6Q16828 381 aa12.39□□□□□ -0.43
CLN3-210ENST00000563874 FAM46CQ5VWP2 391 aa12.39□□□□□ -0.43
CLN3-210ENST00000563874 VASNQ6EMK4 673 aa12.39□□□□□ -0.43
CLN3-210ENST00000563874 AMZ2Q86W34 360 aa12.39□□□□□ -0.43
CLN3-210ENST00000563874 C12orf40Q86WS4 652 aa12.39□□□□□ -0.43
CLN3-210ENST00000563874 TIGD4Q8IY51 512 aa12.39□□□□□ -0.43
CLN3-210ENST00000563874 OR51G2Q8NGK0 314 aa12.39□□□□□ -0.43
CLN3-210ENST00000563874 SMG7Q92540 1137 aaKnown RBP12.39□□□□□ -0.43
CLN3-210ENST00000563874 PHF21AQ96BD5 680 aa12.39□□□□□ -0.43
CLN3-210ENST00000563874 FCRL4Q96PJ5 515 aa12.39□□□□□ -0.43
CLN3-210ENST00000563874 AICDAQ9GZX7 198 aa12.39□□□□□ -0.43
CLN3-210ENST00000563874 ACSS1Q9NUB1 689 aaPredicted RBP12.39□□□□□ -0.43
CLN3-210ENST00000563874 ZFR2Q9UPR6 939 aaKnown RBP12.39□□□□□ -0.43
CLN3-210ENST00000563874 COL4A6Q14031 1691 aa12.38□□□□□ -0.43
CLN3-210ENST00000563874 HEATR5BQ9P2D3 2071 aa12.38□□□□□ -0.43
CLN3-210ENST00000563874 ANTXRLA6NF34 631 aa12.38□□□□□ -0.43
CLN3-210ENST00000563874 KDM4EB2RXH2 506 aaPredicted RBP12.38□□□□□ -0.43
CLN3-210ENST00000563874 LATO43561 262 aa12.38□□□□□ -0.43
CLN3-210ENST00000563874 PIP5K1CO60331 668 aa12.38□□□□□ -0.43
CLN3-210ENST00000563874 FGF18O76093 207 aa12.38□□□□□ -0.43
CLN3-210ENST00000563874 LAG3P18627 525 aa12.38□□□□□ -0.43
CLN3-210ENST00000563874 KHKP50053 298 aa12.38□□□□□ -0.43
CLN3-210ENST00000563874 ST8SIA6P61647 398 aa12.38□□□□□ -0.43
CLN3-210ENST00000563874 FAM27D1Q5T7N8 215 aa12.38□□□□□ -0.43
CLN3-210ENST00000563874 OR4C11Q6IEV9 310 aa12.38□□□□□ -0.43
CLN3-210ENST00000563874 TMEM91Q6ZNR0 172 aa12.38□□□□□ -0.43
CLN3-210ENST00000563874 OR8K5Q8NH50 307 aa12.38□□□□□ -0.43
CLN3-210ENST00000563874 VWCEQ96DN2 955 aa12.38□□□□□ -0.43
CLN3-210ENST00000563874 MARVELD1Q9BSK0 173 aa12.38□□□□□ -0.43
CLN3-210ENST00000563874 PTGFRNQ9P2B2 879 aa12.38□□□□□ -0.43
CLN3-210ENST00000563874 SLC23A1Q9UHI7 598 aa12.38□□□□□ -0.43
CLN3-210ENST00000563874 SLC13A4Q9UKG4 626 aa12.38□□□□□ -0.43
CLN3-210ENST00000563874 AKAP8O43823 692 aaKnown RBP12.38□□□□□ -0.43
CLN3-210ENST00000563874 MOSPD3O75425 235 aa12.38□□□□□ -0.43
CLN3-210ENST00000563874 TSPAN31Q12999 210 aa12.38□□□□□ -0.43
CLN3-210ENST00000563874 MRPL28Q13084 256 aaKnown RBP12.38□□□□□ -0.43
CLN3-210ENST00000563874 LILRA6Q6PI73 481 aa12.38□□□□□ -0.43
CLN3-210ENST00000563874 PLCZ1Q86YW0 608 aa12.38□□□□□ -0.43
CLN3-210ENST00000563874 NRMQ8IXM6 262 aa12.38□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms