RNA–Protein interactions for RNA: ENST00000563842.5

CLK3-213, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 860 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-213ENST00000563842 NPIPA2E9PIF3 369 aa12.26□□□□□ -0.45
CLK3-213ENST00000563842 NPIPA3F8WFD2 350 aa12.26□□□□□ -0.45
CLK3-213ENST00000563842 SLCO1B7G3V0H7 640 aa12.26□□□□□ -0.45
CLK3-213ENST00000563842 EMC8O43402 210 aa12.26□□□□□ -0.45
CLK3-213ENST00000563842 TSPAN2O60636 221 aa12.26□□□□□ -0.45
CLK3-213ENST00000563842 ICOSLGO75144 302 aa12.26□□□□□ -0.45
CLK3-213ENST00000563842 SOX30O94993 753 aa12.26□□□□□ -0.45
CLK3-213ENST00000563842 PSMG1O95456 288 aa12.26□□□□□ -0.45
CLK3-213ENST00000563842 CLDN8P56748 225 aa12.26□□□□□ -0.45
CLK3-213ENST00000563842 CORO7P57737 925 aa12.26□□□□□ -0.45
CLK3-213ENST00000563842 PSG6Q00889 435 aa12.26□□□□□ -0.45
CLK3-213ENST00000563842 PTGR1Q14914 329 aa12.26□□□□□ -0.45
CLK3-213ENST00000563842 ZNF385BQ569K4 471 aa12.26□□□□□ -0.45
CLK3-213ENST00000563842 WLSQ5T9L3 541 aa12.26□□□□□ -0.45
CLK3-213ENST00000563842 BICRALQ6AI39 1079 aa12.26□□□□□ -0.45
CLK3-213ENST00000563842 TIGD3Q6B0B8 471 aa12.26□□□□□ -0.45
CLK3-213ENST00000563842 ZCCHC12Q6PEW1 402 aa12.26□□□□□ -0.45
CLK3-213ENST00000563842 NPSR1Q6W5P4 371 aa12.26□□□□□ -0.45
CLK3-213ENST00000563842 HDXQ7Z353 690 aa12.26□□□□□ -0.45
CLK3-213ENST00000563842 FGD2Q7Z6J4 655 aa12.26□□□□□ -0.45
CLK3-213ENST00000563842 MRGPRGQ86SM5 289 aa12.26□□□□□ -0.45
CLK3-213ENST00000563842 CDRT4Q8N9R6 151 aa12.26□□□□□ -0.45
CLK3-213ENST00000563842 NUP43Q8NFH3 380 aa12.26□□□□□ -0.45
CLK3-213ENST00000563842 PHF12Q96QT6 1004 aa12.26□□□□□ -0.45
CLK3-213ENST00000563842 NODALQ96S42 347 aa12.26□□□□□ -0.45
CLK3-213ENST00000563842 ADOQ96SZ5 270 aa12.26□□□□□ -0.45
CLK3-213ENST00000563842 LMF2Q9BU23 707 aaKnown RBP12.26□□□□□ -0.45
CLK3-213ENST00000563842 C20orf27Q9GZN8 174 aa12.26□□□□□ -0.45
CLK3-213ENST00000563842 MANSC1Q9H8J5 431 aa12.26□□□□□ -0.45
CLK3-213ENST00000563842 ZNF395Q9H8N7 513 aaPredicted RBP12.26□□□□□ -0.45
CLK3-213ENST00000563842 AKTIPQ9H8T0 292 aa12.26□□□□□ -0.45
CLK3-213ENST00000563842 NTMQ9P121 344 aa12.26□□□□□ -0.45
CLK3-213ENST00000563842 ACAD8Q9UKU7 415 aa12.26□□□□□ -0.45
CLK3-213ENST00000563842 CBLCQ9ULV8 474 aa12.26□□□□□ -0.45
CLK3-213ENST00000563842 ABCA12Q86UK0 2595 aa12.26□□□□□ -0.45
CLK3-213ENST00000563842 PCNX3Q9H6A9 2034 aa12.25□□□□□ -0.45
CLK3-213ENST00000563842 CACNA1DQ01668 2161 aa12.25□□□□□ -0.45
CLK3-213ENST00000563842 TRPC5OSA6NMA1 111 aa12.25□□□□□ -0.45
CLK3-213ENST00000563842 SNPHO15079 494 aa12.25□□□□□ -0.45
CLK3-213ENST00000563842 CBR3O75828 277 aa12.25□□□□□ -0.45
CLK3-213ENST00000563842 TRAPPC6AO75865 159 aa12.25□□□□□ -0.45
CLK3-213ENST00000563842 KCNH1O95259 989 aa12.25□□□□□ -0.45
CLK3-213ENST00000563842 HOXD4P09016 255 aaPredicted RBP12.25□□□□□ -0.45
CLK3-213ENST00000563842 RFPL3SP0C7P2 107 aa12.25□□□□□ -0.45
CLK3-213ENST00000563842 G6PDP11413 515 aa12.25□□□□□ -0.45
CLK3-213ENST00000563842 LBPP18428 481 aa12.25□□□□□ -0.45
CLK3-213ENST00000563842 GCKP35557 465 aa12.25□□□□□ -0.45
CLK3-213ENST00000563842 PRIM2P49643 509 aa12.25□□□□□ -0.45
CLK3-213ENST00000563842 CLK3P49761 638 aaKnown RBP12.25□□□□□ -0.45
CLK3-213ENST00000563842 PRKAG1P54619 331 aa12.25□□□□□ -0.45
CLK3-213ENST00000563842 C21orf58P58505 322 aa12.25□□□□□ -0.45
CLK3-213ENST00000563842 ART3Q13508 389 aa12.25□□□□□ -0.45
CLK3-213ENST00000563842 TOMM20Q15388 145 aa12.25□□□□□ -0.45
CLK3-213ENST00000563842 GXYLT1Q4G148 440 aa12.25□□□□□ -0.45
CLK3-213ENST00000563842 ANGPTL8Q6UXH0 198 aa12.25□□□□□ -0.45
CLK3-213ENST00000563842 SZRD1Q7Z422 152 aa12.25□□□□□ -0.45
CLK3-213ENST00000563842 OR7A2PQ8NGA2 310 aa12.25□□□□□ -0.45
CLK3-213ENST00000563842 NEIL3Q8TAT5 605 aa12.25□□□□□ -0.45
CLK3-213ENST00000563842 OR5P2Q8WZ92 322 aa12.25□□□□□ -0.45
CLK3-213ENST00000563842 NTNG2Q96CW9 530 aa12.25□□□□□ -0.45
CLK3-213ENST00000563842 COQ8BQ96D53 544 aa12.25□□□□□ -0.45
CLK3-213ENST00000563842 PPP1R36Q96LQ0 422 aa12.25□□□□□ -0.45
CLK3-213ENST00000563842 MS4A4EQ96PG1 132 aa12.25□□□□□ -0.45
CLK3-213ENST00000563842 NUF2Q9BZD4 464 aa12.25□□□□□ -0.45
CLK3-213ENST00000563842 BHLHE41Q9C0J9 482 aaPredicted RBP12.25□□□□□ -0.45
CLK3-213ENST00000563842 MEAF6Q9HAF1 191 aa12.25□□□□□ -0.45
CLK3-213ENST00000563842 HHATLQ9HCP6 504 aa12.25□□□□□ -0.45
CLK3-213ENST00000563842 NEUROD4Q9HD90 331 aa12.25□□□□□ -0.45
CLK3-213ENST00000563842 SDHAF3Q9NRP4 125 aa12.25□□□□□ -0.45
CLK3-213ENST00000563842 COQ3Q9NZJ6 369 aa12.25□□□□□ -0.45
CLK3-213ENST00000563842 C15orf41Q9Y2V0 281 aa12.25□□□□□ -0.45
CLK3-213ENST00000563842 PCDHGB3Q9Y5G1 929 aa12.25□□□□□ -0.45
CLK3-213ENST00000563842 KLF2Q9Y5W3 355 aaPredicted RBP12.25□□□□□ -0.45
CLK3-213ENST00000563842 LIPGQ9Y5X9 500 aa12.25□□□□□ -0.45
CLK3-213ENST00000563842 GNB5O14775 395 aa12.24□□□□□ -0.45
CLK3-213ENST00000563842 HDAC3O15379 428 aa12.24□□□□□ -0.45
CLK3-213ENST00000563842 WDR1O75083 606 aa12.24□□□□□ -0.45
CLK3-213ENST00000563842 SNNO75324 88 aaPredicted RBP12.24□□□□□ -0.45
CLK3-213ENST00000563842 CLDN1O95832 211 aa12.24□□□□□ -0.45
CLK3-213ENST00000563842 HPNP05981 417 aa12.24□□□□□ -0.45
CLK3-213ENST00000563842 CELA3AP09093 270 aa12.24□□□□□ -0.45
CLK3-213ENST00000563842 LAMP1P11279 417 aa12.24□□□□□ -0.45
CLK3-213ENST00000563842 GABRA1P14867 456 aa12.24□□□□□ -0.45
CLK3-213ENST00000563842 GABRA3P34903 492 aa12.24□□□□□ -0.45
CLK3-213ENST00000563842 CDK9P50750 372 aaKnown RBP12.24□□□□□ -0.45
CLK3-213ENST00000563842 GAB1Q13480 694 aa12.24□□□□□ -0.45
CLK3-213ENST00000563842 SF3B4Q15427 424 aaKnown RBP eCLIP12.24□□□□□ -0.453e-6■■■■□ 21.5
CLK3-213ENST00000563842 BHLHB9Q6PI77 547 aa12.24□□□□□ -0.45
CLK3-213ENST00000563842 ACAD11Q709F0 780 aa12.24□□□□□ -0.45
CLK3-213ENST00000563842 CAMKMTQ7Z624 323 aa12.24□□□□□ -0.45
CLK3-213ENST00000563842 RIMKLAQ8IXN7 391 aa12.24□□□□□ -0.45
CLK3-213ENST00000563842 VPS37AQ8NEZ2 397 aa12.24□□□□□ -0.45
CLK3-213ENST00000563842 GPR151Q8TDV0 419 aa12.24□□□□□ -0.45
CLK3-213ENST00000563842 ITLN2Q8WWU7 325 aaPredicted RBP12.24□□□□□ -0.45
CLK3-213ENST00000563842 MOAP1Q96BY2 351 aa12.24□□□□□ -0.45
CLK3-213ENST00000563842 EFHD2Q96C19 240 aaPredicted RBP12.24□□□□□ -0.45
CLK3-213ENST00000563842 ATP6V1G3Q96LB4 118 aa12.24□□□□□ -0.45
CLK3-213ENST00000563842 GNRHR2Q96P88 292 aa12.24□□□□□ -0.45
CLK3-213ENST00000563842 DMRTA2Q96SC8 542 aa12.24□□□□□ -0.45
CLK3-213ENST00000563842 DUSP26Q9BV47 211 aa12.24□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 53.1 ms