RNA–Protein interactions for RNA: ENST00000561818.1

VPS39-204, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-204ENST00000561818 SMYD1Q8NB12 490 aa7.02□□□□□ -1.29
VPS39-204ENST00000561818 OR7G2Q8NG99 324 aa7.02□□□□□ -1.29
VPS39-204ENST00000561818 WDR36Q8NI36 951 aaKnown RBP7.02□□□□□ -1.29
VPS39-204ENST00000561818 TEX47Q8TBZ9 253 aa7.02□□□□□ -1.29
VPS39-204ENST00000561818 GPR151Q8TDV0 419 aa7.02□□□□□ -1.29
VPS39-204ENST00000561818 PATE1Q8WXA2 126 aa7.02□□□□□ -1.29
VPS39-204ENST00000561818 JPH3Q8WXH2 748 aaPredicted RBP7.02□□□□□ -1.29
VPS39-204ENST00000561818 SLC9A6Q92581 669 aa7.02□□□□□ -1.29
VPS39-204ENST00000561818 RORBQ92753 470 aa7.02□□□□□ -1.29
VPS39-204ENST00000561818 RAB8BQ92930 207 aa7.02□□□□□ -1.29
VPS39-204ENST00000561818 DTNBP1Q96EV8 351 aa7.02□□□□□ -1.29
VPS39-204ENST00000561818 MMABQ96EY8 250 aaPredicted RBP7.02□□□□□ -1.29
VPS39-204ENST00000561818 SLC19A3Q9BZV2 496 aa7.02□□□□□ -1.29
VPS39-204ENST00000561818 TRIM2Q9C040 744 aa7.02□□□□□ -1.29
VPS39-204ENST00000561818 DUSP21Q9H596 190 aa7.02□□□□□ -1.29
VPS39-204ENST00000561818 CXorf21Q9HAI6 301 aa7.02□□□□□ -1.29
VPS39-204ENST00000561818 TMEM27Q9HBJ8 222 aa7.02□□□□□ -1.29
VPS39-204ENST00000561818 C5AR2Q9P296 337 aa7.02□□□□□ -1.29
VPS39-204ENST00000561818 SEC14L4Q9UDX3 406 aa7.02□□□□□ -1.29
VPS39-204ENST00000561818 C19orf25Q9UFG5 118 aaPredicted RBP7.02□□□□□ -1.29
VPS39-204ENST00000561818 PILRBQ9UKJ0 227 aa7.02□□□□□ -1.29
VPS39-204ENST00000561818 KLHL20Q9Y2M5 609 aa7.02□□□□□ -1.29
VPS39-204ENST00000561818 RPL36Q9Y3U8 105 aaKnown RBP7.02□□□□□ -1.29
VPS39-204ENST00000561818 PCDHGB6Q9Y5F9 930 aa7.02□□□□□ -1.29
VPS39-204ENST00000561818 PCDHGB2Q9Y5G2 931 aa7.02□□□□□ -1.29
VPS39-204ENST00000561818 PCDHGA5Q9Y5G8 931 aa7.02□□□□□ -1.29
VPS39-204ENST00000561818 RNF215Q9Y6U7 377 aa7.02□□□□□ -1.29
VPS39-204ENST00000561818 MDC1Q14676 2089 aaKnown RBP7.02□□□□□ -1.29
VPS39-204ENST00000561818 ZAR1LA6NP61 321 aa7.01□□□□□ -1.29
VPS39-204ENST00000561818 CLCA1A8K7I4 914 aa7.01□□□□□ -1.29
VPS39-204ENST00000561818 C4orf51C9J302 202 aa7.01□□□□□ -1.29
VPS39-204ENST00000561818 SGK494L7N484 410 aa7.01□□□□□ -1.29
VPS39-204ENST00000561818 SOX1O00570 391 aaPredicted RBP7.01□□□□□ -1.29
VPS39-204ENST00000561818 SLC22A1O15245 554 aa7.01□□□□□ -1.29
VPS39-204ENST00000561818 FAM20BO75063 409 aa7.01□□□□□ -1.29
VPS39-204ENST00000561818 RDH16O75452 317 aa7.01□□□□□ -1.29
VPS39-204ENST00000561818 PPM1BO75688 479 aa7.01□□□□□ -1.29
VPS39-204ENST00000561818 CYP7B1O75881 506 aa7.01□□□□□ -1.29
VPS39-204ENST00000561818 SEC24DO94855 1032 aaPredicted RBP7.01□□□□□ -1.29
VPS39-204ENST00000561818 HMGN1P05114 100 aa7.01□□□□□ -1.29
VPS39-204ENST00000561818 GP1BAP07359 652 aa7.01□□□□□ -1.29
VPS39-204ENST00000561818 CELA2BP08218 269 aaPredicted RBP7.01□□□□□ -1.29
VPS39-204ENST00000561818 PVRP15151 417 aa7.01□□□□□ -1.29
VPS39-204ENST00000561818 HPGDP15428 266 aa7.01□□□□□ -1.29
VPS39-204ENST00000561818 FBLP22087 321 aaKnown RBP7.01□□□□□ -1.29
VPS39-204ENST00000561818 CD1CP29017 333 aa7.01□□□□□ -1.29
VPS39-204ENST00000561818 GSTT1P30711 240 aa7.01□□□□□ -1.29
VPS39-204ENST00000561818 PIGAP37287 484 aa7.01□□□□□ -1.29
VPS39-204ENST00000561818 ADH7P40394 386 aa7.01□□□□□ -1.29
VPS39-204ENST00000561818 MAP3K8P41279 467 aa7.01□□□□□ -1.29
VPS39-204ENST00000561818 SLC6A8P48029 635 aa7.01□□□□□ -1.29
VPS39-204ENST00000561818 GABRA4P48169 554 aa7.01□□□□□ -1.29
VPS39-204ENST00000561818 FNTBP49356 437 aa7.01□□□□□ -1.29
VPS39-204ENST00000561818 DHPSP49366 369 aaPredicted RBP7.01□□□□□ -1.29
VPS39-204ENST00000561818 CSNK1EP49674 416 aaKnown RBP7.01□□□□□ -1.29
VPS39-204ENST00000561818 GPR143P51810 404 aa7.01□□□□□ -1.29
VPS39-204ENST00000561818 CRISP1P54107 249 aa7.01□□□□□ -1.29
VPS39-204ENST00000561818 COPZ1P61923 177 aa7.01□□□□□ -1.29
VPS39-204ENST00000561818 RPS26P62854 115 aaKnown RBP7.01□□□□□ -1.29
VPS39-204ENST00000561818 SLC35A2P78381 396 aa7.01□□□□□ -1.29
VPS39-204ENST00000561818 ROR2Q01974 943 aaKnown RBP7.01□□□□□ -1.29
VPS39-204ENST00000561818 CD47Q08722 323 aa7.01□□□□□ -1.29
VPS39-204ENST00000561818 TSPAN31Q12999 210 aa7.01□□□□□ -1.29
VPS39-204ENST00000561818 TARDBPQ13148 414 aaKnown RBP eCLIP7.01□□□□□ -1.29
VPS39-204ENST00000561818 RAPSNQ13702 412 aa7.01□□□□□ -1.29
VPS39-204ENST00000561818 IL11RAQ14626 422 aa7.01□□□□□ -1.29
VPS39-204ENST00000561818 PUM1Q14671 1186 aaKnown RBP eCLIP7.01□□□□□ -1.29
VPS39-204ENST00000561818 C16orf72Q14CZ0 275 aa7.01□□□□□ -1.29
VPS39-204ENST00000561818 NPTX1Q15818 432 aa7.01□□□□□ -1.29
VPS39-204ENST00000561818 ZNF141Q15928 474 aa7.01□□□□□ -1.29
VPS39-204ENST00000561818 FLYWCH1Q4VC44 716 aa7.01□□□□□ -1.29
VPS39-204ENST00000561818 ENTPD8Q5MY95 495 aa7.01□□□□□ -1.29
VPS39-204ENST00000561818 TMEM201Q5SNT2 666 aa7.01□□□□□ -1.29
VPS39-204ENST00000561818 ZNF770Q6IQ21 691 aaPredicted RBP7.01□□□□□ -1.29
VPS39-204ENST00000561818 C5orf46Q6UWT4 87 aa7.01□□□□□ -1.29
VPS39-204ENST00000561818 ZNF730Q6ZMV8 503 aa7.01□□□□□ -1.29
VPS39-204ENST00000561818 FRRS1Q6ZNA5 592 aa7.01□□□□□ -1.29
VPS39-204ENST00000561818 RASSF6Q6ZTQ3 369 aa7.01□□□□□ -1.29
VPS39-204ENST00000561818 KCTD8Q6ZWB6 473 aa7.01□□□□□ -1.29
VPS39-204ENST00000561818 CEP68Q76N32 757 aa7.01□□□□□ -1.29
VPS39-204ENST00000561818 SATL1Q86VE3 508 aa7.01□□□□□ -1.29
VPS39-204ENST00000561818 C1orf210Q8IVY1 113 aa7.01□□□□□ -1.29
VPS39-204ENST00000561818 FAM20CQ8IXL6 584 aa7.01□□□□□ -1.29
VPS39-204ENST00000561818 GALNT15Q8N3T1 639 aa7.01□□□□□ -1.29
VPS39-204ENST00000561818 SLC5A8Q8N695 610 aa7.01□□□□□ -1.29
VPS39-204ENST00000561818 AMER3Q8N944 861 aa7.01□□□□□ -1.29
VPS39-204ENST00000561818 MORN4Q8NDC4 146 aa7.01□□□□□ -1.29
VPS39-204ENST00000561818 ZNF540Q8NDQ6 660 aa7.01□□□□□ -1.29
VPS39-204ENST00000561818 GPR32P1Q8NGA4 272 aa7.01□□□□□ -1.29
VPS39-204ENST00000561818 OR52L1Q8NGH7 329 aa7.01□□□□□ -1.29
VPS39-204ENST00000561818 OR5D16Q8NGK9 328 aa7.01□□□□□ -1.29
VPS39-204ENST00000561818 OR9Q1Q8NGQ5 310 aa7.01□□□□□ -1.29
VPS39-204ENST00000561818 OR51Q1Q8NH59 317 aa7.01□□□□□ -1.29
VPS39-204ENST00000561818 RHOXF1Q8NHV9 184 aa7.01□□□□□ -1.29
VPS39-204ENST00000561818 FAM81AQ8TBF8 368 aa7.01□□□□□ -1.29
VPS39-204ENST00000561818 DNAJA4Q8WW22 397 aaPredicted RBP7.01□□□□□ -1.29
VPS39-204ENST00000561818 CSF3RQ99062 836 aa7.01□□□□□ -1.29
VPS39-204ENST00000561818 SDF2Q99470 211 aa7.01□□□□□ -1.29
VPS39-204ENST00000561818 DOK1Q99704 481 aa7.01□□□□□ -1.29
VPS39-204ENST00000561818 ALOXE3Q9BYJ1 711 aa7.01□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms