RNA–Protein interactions for RNA: ENST00000560858.1

SPG11-223, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 5

Gene SPG11, Length 447 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-223ENST00000560858 ZNF490Q9ULM2 529 aaPredicted RBP2.33□□□□□ -2.04
SPG11-223ENST00000560858 SNX6Q9UNH7 406 aa2.33□□□□□ -2.04
SPG11-223ENST00000560858 CORO2BQ9UQ03 480 aa2.33□□□□□ -2.04
SPG11-223ENST00000560858 ERVK-11Q9UQG0 969 aa2.33□□□□□ -2.04
SPG11-223ENST00000560858 RNF6Q9Y252 685 aa2.33□□□□□ -2.04
SPG11-223ENST00000560858 TRAPPC4Q9Y296 219 aa2.33□□□□□ -2.04
SPG11-223ENST00000560858 POFUT2Q9Y2G5 429 aa2.33□□□□□ -2.04
SPG11-223ENST00000560858 IFT52Q9Y366 437 aa2.33□□□□□ -2.04
SPG11-223ENST00000560858 PPIL1Q9Y3C6 166 aa2.33□□□□□ -2.04
SPG11-223ENST00000560858 GRIP1Q9Y3R0 1128 aa2.33□□□□□ -2.04
SPG11-223ENST00000560858 PCDHGB3Q9Y5G1 929 aa2.33□□□□□ -2.04
SPG11-223ENST00000560858 PCDHGA6Q9Y5G7 932 aa2.33□□□□□ -2.04
SPG11-223ENST00000560858 KLK4Q9Y5K2 254 aa2.33□□□□□ -2.04
SPG11-223ENST00000560858 GMPPBQ9Y5P6 360 aa2.33□□□□□ -2.04
SPG11-223ENST00000560858 LYVE1Q9Y5Y7 322 aa2.33□□□□□ -2.04
SPG11-223ENST00000560858 PRSS21Q9Y6M0 314 aa2.33□□□□□ -2.04
SPG11-223ENST00000560858 MDC1Q14676 2089 aaKnown RBP2.33□□□□□ -2.04
SPG11-223ENST00000560858 HEATR5BQ9P2D3 2071 aa2.33□□□□□ -2.04
SPG11-223ENST00000560858 DSPPQ9NZW4 1301 aa2.33□□□□□ -2.04
SPG11-223ENST00000560858 SNRNP200O75643 2136 aaKnown RBP2.32□□□□□ -2.04
SPG11-223ENST00000560858 GLYATL1P3A0A0U1RQE8 302 aa2.32□□□□□ -2.04
SPG11-223ENST00000560858 A0A0U1RQS6 177 aa2.32□□□□□ -2.04
SPG11-223ENST00000560858 PNMA8CA0A1B0GUJ8 204 aa2.32□□□□□ -2.04
SPG11-223ENST00000560858 IQCMA0A1B0GVH7 501 aa2.32□□□□□ -2.04
SPG11-223ENST00000560858 TSPAN11A1L157 253 aa2.32□□□□□ -2.04
SPG11-223ENST00000560858 ZNF840PA6NDX5 716 aa2.32□□□□□ -2.04
SPG11-223ENST00000560858 EFCAB10A6NFE3 127 aa2.32□□□□□ -2.04
SPG11-223ENST00000560858 NPIPB15A6NHN6 443 aaPredicted RBP2.32□□□□□ -2.04
SPG11-223ENST00000560858 CLCA1A8K7I4 914 aa2.32□□□□□ -2.04
SPG11-223ENST00000560858 MAGEB17A8MXT2 336 aa2.32□□□□□ -2.04
SPG11-223ENST00000560858 EVPLLA8MZ36 301 aa2.32□□□□□ -2.04
SPG11-223ENST00000560858 LOC730098B7Z3J9 87 aa2.32□□□□□ -2.04
SPG11-223ENST00000560858 PTGES3LE9PB15 166 aa2.32□□□□□ -2.04
SPG11-223ENST00000560858 LOC110117498-PIK3R3F6TDL0 507 aa2.32□□□□□ -2.04
SPG11-223ENST00000560858 H0YIV9 168 aa2.32□□□□□ -2.04
SPG11-223ENST00000560858 GFYI3L273 518 aa2.32□□□□□ -2.04
SPG11-223ENST00000560858 hCG_2039718K7EN88 272 aa2.32□□□□□ -2.04
SPG11-223ENST00000560858 AP4M1O00189 453 aa2.32□□□□□ -2.04
SPG11-223ENST00000560858 RFXANKO14593 260 aa2.32□□□□□ -2.04
SPG11-223ENST00000560858 FPGTO14772 594 aa2.32□□□□□ -2.04
SPG11-223ENST00000560858 HAT1O14929 419 aa2.32□□□□□ -2.04
SPG11-223ENST00000560858 KMOO15229 486 aa2.32□□□□□ -2.04
SPG11-223ENST00000560858 SEC14L5O43304 696 aa2.32□□□□□ -2.04
SPG11-223ENST00000560858 AIREO43918 545 aa2.32□□□□□ -2.04
SPG11-223ENST00000560858 GCM2O75603 506 aaPredicted RBP2.32□□□□□ -2.04
SPG11-223ENST00000560858 SLC25A14O95258 325 aaPredicted RBP2.32□□□□□ -2.04
SPG11-223ENST00000560858 OXSR1O95747 527 aaPredicted RBP2.32□□□□□ -2.04
SPG11-223ENST00000560858 ZNF682O95780 498 aa2.32□□□□□ -2.04
SPG11-223ENST00000560858 GUCA1CO95843 209 aa2.32□□□□□ -2.04
SPG11-223ENST00000560858 IGSF6O95976 241 aa2.32□□□□□ -2.04
SPG11-223ENST00000560858 PTHP01270 115 aa2.32□□□□□ -2.04
SPG11-223ENST00000560858 ASGR1P07306 291 aa2.32□□□□□ -2.04
SPG11-223ENST00000560858 ALPIP09923 528 aa2.32□□□□□ -2.04
SPG11-223ENST00000560858 ANXA8P13928 327 aa2.32□□□□□ -2.04
SPG11-223ENST00000560858 PLA2G2AP14555 144 aa2.32□□□□□ -2.04
SPG11-223ENST00000560858 HMGA1P17096 107 aaKnown RBP2.32□□□□□ -2.04
SPG11-223ENST00000560858 POLR2EP19388 210 aaKnown RBP2.32□□□□□ -2.04
SPG11-223ENST00000560858 CD22P20273 847 aa2.32□□□□□ -2.04
SPG11-223ENST00000560858 PRPS1L1P21108 318 aa2.32□□□□□ -2.04
SPG11-223ENST00000560858 CBLP22681 906 aa2.32□□□□□ -2.04
SPG11-223ENST00000560858 LHCGRP22888 699 aa2.32□□□□□ -2.04
SPG11-223ENST00000560858 S100A1P23297 94 aa2.32□□□□□ -2.04
SPG11-223ENST00000560858 GADD45AP24522 165 aa2.32□□□□□ -2.04
SPG11-223ENST00000560858 FPR3P25089 353 aa2.32□□□□□ -2.04
SPG11-223ENST00000560858 EPHA2P29317 976 aa2.32□□□□□ -2.04
SPG11-223ENST00000560858 RRM2P31350 389 aa2.32□□□□□ -2.04
SPG11-223ENST00000560858 TIA1P31483 386 aaKnown RBP eCLIP2.32□□□□□ -2.04
SPG11-223ENST00000560858 GRK5P34947 590 aa2.32□□□□□ -2.04
SPG11-223ENST00000560858 TGFBR1P36897 503 aa2.32□□□□□ -2.04
SPG11-223ENST00000560858 ARL1P40616 181 aaPredicted RBP2.32□□□□□ -2.04
SPG11-223ENST00000560858 HNF4AP41235 474 aa2.32□□□□□ -2.04
SPG11-223ENST00000560858 CSKP41240 450 aa2.32□□□□□ -2.04
SPG11-223ENST00000560858 NSG1P42857 185 aa2.32□□□□□ -2.04
SPG11-223ENST00000560858 SLC15A1P46059 708 aa2.32□□□□□ -2.04
SPG11-223ENST00000560858 XCR1P46094 333 aa2.32□□□□□ -2.04
SPG11-223ENST00000560858 ASMTP46597 345 aa2.32□□□□□ -2.04
SPG11-223ENST00000560858 OR1G1P47890 313 aa2.32□□□□□ -2.04
SPG11-223ENST00000560858 GSSP48637 474 aa2.32□□□□□ -2.04
SPG11-223ENST00000560858 SLC11A1P49279 550 aa2.32□□□□□ -2.04
SPG11-223ENST00000560858 CLK1P49759 484 aaKnown RBP2.32□□□□□ -2.04
SPG11-223ENST00000560858 ARHGDIAP52565 204 aa2.32□□□□□ -2.04
SPG11-223ENST00000560858 MVDP53602 400 aa2.32□□□□□ -2.04
SPG11-223ENST00000560858 LOXL3P58215 753 aa2.32□□□□□ -2.04
SPG11-223ENST00000560858 DCDC1P59894 354 aa2.32□□□□□ -2.04
SPG11-223ENST00000560858 KRTAP10-12P60413 245 aa2.32□□□□□ -2.04
SPG11-223ENST00000560858 PFN3P60673 137 aa2.32□□□□□ -2.04
SPG11-223ENST00000560858 RHOAP61586 193 aa2.32□□□□□ -2.04
SPG11-223ENST00000560858 RPP38P78345 283 aaKnown RBP2.32□□□□□ -2.04
SPG11-223ENST00000560858 OLR1P78380 273 aa2.32□□□□□ -2.04
SPG11-223ENST00000560858 RAE1P78406 368 aaKnown RBP2.32□□□□□ -2.04
SPG11-223ENST00000560858 HSF1Q00613 529 aa2.32□□□□□ -2.04
SPG11-223ENST00000560858 PLIN5Q00G26 463 aa2.32□□□□□ -2.04
SPG11-223ENST00000560858 CFHR1Q03591 330 aa2.32□□□□□ -2.04
SPG11-223ENST00000560858 EEF1A2Q05639 463 aaKnown RBP2.32□□□□□ -2.04
SPG11-223ENST00000560858 KHDRBS1Q07666 443 aaKnown RBP eCLIP2.32□□□□□ -2.04
SPG11-223ENST00000560858 RBBP4Q09028 425 aa2.32□□□□□ -2.04
SPG11-223ENST00000560858 TWF1Q12792 350 aa2.32□□□□□ -2.04
SPG11-223ENST00000560858 PPP1R8Q12972 351 aaKnown RBP2.32□□□□□ -2.04
SPG11-223ENST00000560858 PPIGQ13427 754 aaKnown RBP eCLIP2.32□□□□□ -2.04
SPG11-223ENST00000560858 GAB1Q13480 694 aa2.32□□□□□ -2.04
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms