RNA–Protein interactions for RNA: ENST00000559556.5

TPM1-220, Transcript of tropomyosin 1, humanhuman

APPRIS ALT1 TSL 2 BASIC

Gene TPM1, Length 977 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-220ENST00000559556 ARSGQ96EG1 525 aa11.85□□□□□ -0.51
TPM1-220ENST00000559556 SFXN2Q96NB2 322 aa11.85□□□□□ -0.51
TPM1-220ENST00000559556 ADOQ96SZ5 270 aa11.85□□□□□ -0.51
TPM1-220ENST00000559556 HBEGFQ99075 208 aa11.85□□□□□ -0.51
TPM1-220ENST00000559556 PAFAH2Q99487 392 aa11.85□□□□□ -0.51
TPM1-220ENST00000559556 PIP5K1AQ99755 562 aa11.85□□□□□ -0.51
TPM1-220ENST00000559556 MRPL46Q9H2W6 279 aaKnown RBP11.85□□□□□ -0.51
TPM1-220ENST00000559556 ANKRA2Q9H9E1 313 aa11.85□□□□□ -0.51
TPM1-220ENST00000559556 VPS29Q9UBQ0 182 aa11.85□□□□□ -0.51
TPM1-220ENST00000559556 MCM8Q9UJA3 840 aa11.85□□□□□ -0.51
TPM1-220ENST00000559556 DKKL1Q9UK85 242 aa11.85□□□□□ -0.51
TPM1-220ENST00000559556 CUBNO60494 3623 aa11.84□□□□□ -0.51
TPM1-220ENST00000559556 DEFB108AA8MXU0 73 aa11.84□□□□□ -0.51
TPM1-220ENST00000559556 CASKO14936 926 aa11.84□□□□□ -0.51
TPM1-220ENST00000559556 ARHGEF9O43307 516 aa11.84□□□□□ -0.51
TPM1-220ENST00000559556 CTIFO43310 598 aaKnown RBP11.84□□□□□ -0.51
TPM1-220ENST00000559556 OR4F21O95013 312 aa11.84□□□□□ -0.51
TPM1-220ENST00000559556 IL3P08700 152 aa11.84□□□□□ -0.51
TPM1-220ENST00000559556 DPP4P27487 766 aa11.84□□□□□ -0.51
TPM1-220ENST00000559556 IL12BP29460 328 aa11.84□□□□□ -0.51
TPM1-220ENST00000559556 CCKARP32238 428 aa11.84□□□□□ -0.51
TPM1-220ENST00000559556 KRT20P35900 424 aa11.84□□□□□ -0.51
TPM1-220ENST00000559556 PNLIPRP2P54317 469 aa11.84□□□□□ -0.51
TPM1-220ENST00000559556 CDH13P55290 713 aa11.84□□□□□ -0.51
TPM1-220ENST00000559556 SLC7A5Q01650 507 aa11.84□□□□□ -0.51
TPM1-220ENST00000559556 ERCC6LQ2NKX8 1250 aa11.84□□□□□ -0.51
TPM1-220ENST00000559556 C8orf74Q6P047 294 aa11.84□□□□□ -0.51
TPM1-220ENST00000559556 CLEC9AQ6UXN8 241 aa11.84□□□□□ -0.51
TPM1-220ENST00000559556 Q71RC1 249 aaPredicted RBP11.84□□□□□ -0.51
TPM1-220ENST00000559556 LARP4Q71RC2 724 aaKnown RBP eCLIP11.84□□□□□ -0.51
TPM1-220ENST00000559556 TAOK1Q7L7X3 1001 aa11.84□□□□□ -0.51
TPM1-220ENST00000559556 SAMD14Q8IZD0 417 aaPredicted RBP11.84□□□□□ -0.51
TPM1-220ENST00000559556 TMEM151AQ8N4L1 468 aa11.84□□□□□ -0.51
TPM1-220ENST00000559556 ZNF592Q92610 1267 aa11.84□□□□□ -0.51
TPM1-220ENST00000559556 KAT2AQ92830 837 aa11.84□□□□□ -0.51
TPM1-220ENST00000559556 STARD4Q96DR4 205 aa11.84□□□□□ -0.51
TPM1-220ENST00000559556 COX4I2Q96KJ9 171 aa11.84□□□□□ -0.51
TPM1-220ENST00000559556 CDC42EP4Q9H3Q1 356 aaKnown RBP11.84□□□□□ -0.51
TPM1-220ENST00000559556 FOLH1BQ9HBA9 442 aa11.84□□□□□ -0.51
TPM1-220ENST00000559556 SLC22A20A6NK97 555 aa11.83□□□□□ -0.52
TPM1-220ENST00000559556 FAM171A2A8MVW0 826 aa11.83□□□□□ -0.52
TPM1-220ENST00000559556 MANBAO00462 879 aa11.83□□□□□ -0.52
TPM1-220ENST00000559556 PCDH7O60245 1069 aa11.83□□□□□ -0.52
TPM1-220ENST00000559556 PLOD3O60568 738 aa11.83□□□□□ -0.52
TPM1-220ENST00000559556 CTAGE8P0CG41 777 aa11.83□□□□□ -0.52
TPM1-220ENST00000559556 PEPDP12955 493 aa11.83□□□□□ -0.52
TPM1-220ENST00000559556 TSPAN8P19075 237 aa11.83□□□□□ -0.52
TPM1-220ENST00000559556 CRYGSP22914 178 aa11.83□□□□□ -0.52
TPM1-220ENST00000559556 CASQ1P31415 396 aa11.83□□□□□ -0.52
TPM1-220ENST00000559556 EVI2BP34910 448 aa11.83□□□□□ -0.52
TPM1-220ENST00000559556 HSD17B3P37058 310 aa11.83□□□□□ -0.52
TPM1-220ENST00000559556 CD79BP40259 229 aa11.83□□□□□ -0.52
TPM1-220ENST00000559556 MC3RP41968 323 aa11.83□□□□□ -0.52
TPM1-220ENST00000559556 DSCR4P56555 118 aaPredicted RBP11.83□□□□□ -0.52
TPM1-220ENST00000559556 ETF1P62495 437 aaKnown RBP11.83□□□□□ -0.52
TPM1-220ENST00000559556 RAE1P78406 368 aaKnown RBP11.83□□□□□ -0.52
TPM1-220ENST00000559556 RASA2Q15283 850 aa11.83□□□□□ -0.52
TPM1-220ENST00000559556 Q5PR19 223 aa11.83□□□□□ -0.52
TPM1-220ENST00000559556 TCHHL1Q5QJ38 904 aaPredicted RBP11.83□□□□□ -0.52
TPM1-220ENST00000559556 OR5M10Q6IEU7 315 aa11.83□□□□□ -0.52
TPM1-220ENST00000559556 VWA1Q6PCB0 445 aa11.83□□□□□ -0.52
TPM1-220ENST00000559556 CTAGE4Q8IX94 777 aa11.83□□□□□ -0.52
TPM1-220ENST00000559556 CCDC116Q8IYX3 515 aa11.83□□□□□ -0.52
TPM1-220ENST00000559556 FADS6Q8N9I5 356 aa11.83□□□□□ -0.52
TPM1-220ENST00000559556 OR9A2Q8NGT5 310 aa11.83□□□□□ -0.52
TPM1-220ENST00000559556 PIGTQ969N2 578 aa11.83□□□□□ -0.52
TPM1-220ENST00000559556 TRIM44Q96DX7 344 aaPredicted RBP11.83□□□□□ -0.52
TPM1-220ENST00000559556 C11orf24Q96F05 449 aaPredicted RBP11.83□□□□□ -0.52
TPM1-220ENST00000559556 SHCBP1LQ9BZQ2 653 aa11.83□□□□□ -0.52
TPM1-220ENST00000559556 PFDN4Q9NQP4 134 aa11.83□□□□□ -0.52
TPM1-220ENST00000559556 C6orf203Q9P0P8 240 aaPredicted RBP11.83□□□□□ -0.52
TPM1-220ENST00000559556 ZNF180Q9UJW8 692 aa11.83□□□□□ -0.52
TPM1-220ENST00000559556 C17orf51A8MQB3 221 aa11.82□□□□□ -0.52
TPM1-220ENST00000559556 TRIM49D1C9J1S8 452 aa11.82□□□□□ -0.52
TPM1-220ENST00000559556 SMPD2O60906 423 aa11.82□□□□□ -0.52
TPM1-220ENST00000559556 NME6O75414 186 aaPredicted RBP11.82□□□□□ -0.52
TPM1-220ENST00000559556 SMNDC1O75940 238 aaKnown RBP eCLIP11.82□□□□□ -0.521e-8■■□□□ 11.9
TPM1-220ENST00000559556 ESRRBO95718 433 aa11.82□□□□□ -0.52
TPM1-220ENST00000559556 KRT6AP02538 564 aa11.82□□□□□ -0.52
TPM1-220ENST00000559556 KRT6BP04259 564 aa11.82□□□□□ -0.52
TPM1-220ENST00000559556 KRT6CP48668 564 aa11.82□□□□□ -0.52
TPM1-220ENST00000559556 CLDN15P56746 228 aa11.82□□□□□ -0.52
TPM1-220ENST00000559556 MRPS22P82650 360 aaKnown RBP11.82□□□□□ -0.52
TPM1-220ENST00000559556 CLCQ05315 142 aa11.82□□□□□ -0.52
TPM1-220ENST00000559556 FAM27E3Q08E93 113 aa11.82□□□□□ -0.52
TPM1-220ENST00000559556 GANABQ14697 944 aaKnown RBP11.82□□□□□ -0.52
TPM1-220ENST00000559556 SPIN4Q56A73 249 aa11.82□□□□□ -0.52
TPM1-220ENST00000559556 P4HA3Q7Z4N8 544 aa11.82□□□□□ -0.52
TPM1-220ENST00000559556 CDYL2Q8N8U2 506 aa11.82□□□□□ -0.52
TPM1-220ENST00000559556 CNEP1R1Q8N9A8 125 aa11.82□□□□□ -0.52
TPM1-220ENST00000559556 OR7G2Q8NG99 324 aa11.82□□□□□ -0.52
TPM1-220ENST00000559556 OR4K17Q8NGC6 315 aa11.82□□□□□ -0.52
TPM1-220ENST00000559556 DCAKDQ8WVC6 231 aa11.82□□□□□ -0.52
TPM1-220ENST00000559556 EXOSC8Q96B26 276 aaKnown RBP11.82□□□□□ -0.52
TPM1-220ENST00000559556 EFHD2Q96C19 240 aaPredicted RBP11.82□□□□□ -0.52
TPM1-220ENST00000559556 MARK4Q96L34 752 aa11.82□□□□□ -0.52
TPM1-220ENST00000559556 WFIKKN1Q96NZ8 548 aa11.82□□□□□ -0.52
TPM1-220ENST00000559556 ZNF382Q96SR6 550 aa11.82□□□□□ -0.52
TPM1-220ENST00000559556 ACPTQ9BZG2 426 aa11.82□□□□□ -0.52
TPM1-220ENST00000559556 STMN4Q9H169 189 aaPredicted RBP11.82□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms