RNA–Protein interactions for RNA: ENST00000558285.5

USP3-208, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best) BASIC

Gene USP3, Length 1,742 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-208ENST00000558285 LSM12Q3MHD2 195 aaKnown RBP7.98□□□□□ -1.13
USP3-208ENST00000558285 ZNF468Q5VIY5 522 aaPredicted RBP7.98□□□□□ -1.13
USP3-208ENST00000558285 CLEC6AQ6EIG7 209 aa7.98□□□□□ -1.13
USP3-208ENST00000558285 FJX1Q86VR8 437 aa7.98□□□□□ -1.13
USP3-208ENST00000558285 TICAM1Q8IUC6 712 aa7.98□□□□□ -1.13
USP3-208ENST00000558285 CCDC116Q8IYX3 515 aa7.98□□□□□ -1.13
USP3-208ENST00000558285 VPS37AQ8NEZ2 397 aa7.98□□□□□ -1.13
USP3-208ENST00000558285 ADCY4Q8NFM4 1077 aa7.98□□□□□ -1.13
USP3-208ENST00000558285 RAB3IL1Q8TBN0 382 aa7.98□□□□□ -1.13
USP3-208ENST00000558285 PHF10Q8WUB8 498 aaKnown RBP7.98□□□□□ -1.13
USP3-208ENST00000558285 JSRP1Q96MG2 331 aaPredicted RBP7.98□□□□□ -1.13
USP3-208ENST00000558285 VKORC1Q9BQB6 163 aa7.98□□□□□ -1.13
USP3-208ENST00000558285 TTTY12Q9BZ98 90 aa7.98□□□□□ -1.13
USP3-208ENST00000558285 REEP4Q9H6H4 257 aa7.98□□□□□ -1.13
USP3-208ENST00000558285 MAT2BQ9NZL9 334 aa7.98□□□□□ -1.13
USP3-208ENST00000558285 KLRF1Q9NZS2 232 aa7.98□□□□□ -1.13
USP3-208ENST00000558285 ERRFI1Q9UJM3 462 aaPredicted RBP7.98□□□□□ -1.13
USP3-208ENST00000558285 POLR3HQ9Y535 204 aaPredicted RBP7.98□□□□□ -1.13
USP3-208ENST00000558285 PCDHGB3Q9Y5G1 929 aa7.98□□□□□ -1.13
USP3-208ENST00000558285 ATMQ13315 3056 aa7.98□□□□□ -1.13
USP3-208ENST00000558285 NBASA2RRP1 2371 aa7.98□□□□□ -1.13
USP3-208ENST00000558285 A0A1B0GTL3 188 aa7.98□□□□□ -1.13
USP3-208ENST00000558285 HTR3EA5X5Y0 456 aa7.98□□□□□ -1.13
USP3-208ENST00000558285 TYROBPO43914 113 aa7.98□□□□□ -1.13
USP3-208ENST00000558285 PRKNO60260 465 aaPredicted RBP7.98□□□□□ -1.13
USP3-208ENST00000558285 TBX19O60806 448 aa7.98□□□□□ -1.13
USP3-208ENST00000558285 ERN1O75460 977 aaKnown RBP7.98□□□□□ -1.13
USP3-208ENST00000558285 KCNH1O95259 989 aa7.98□□□□□ -1.13
USP3-208ENST00000558285 F12P00748 615 aaPredicted RBP7.98□□□□□ -1.13
USP3-208ENST00000558285 LDLRP01130 860 aa7.98□□□□□ -1.13
USP3-208ENST00000558285 TPOP07202 933 aa7.98□□□□□ -1.13
USP3-208ENST00000558285 LINC00032P0C843 101 aa7.98□□□□□ -1.13
USP3-208ENST00000558285 GABRA1P14867 456 aa7.98□□□□□ -1.13
USP3-208ENST00000558285 PRPS1L1P21108 318 aa7.98□□□□□ -1.13
USP3-208ENST00000558285 GPX3P22352 226 aa7.98□□□□□ -1.13
USP3-208ENST00000558285 MST1P26927 711 aa7.98□□□□□ -1.13
USP3-208ENST00000558285 MANFP55145 182 aaKnown RBP7.98□□□□□ -1.13
USP3-208ENST00000558285 STX3Q13277 289 aa7.98□□□□□ -1.13
USP3-208ENST00000558285 TP53BP2Q13625 1128 aa7.98□□□□□ -1.13
USP3-208ENST00000558285 CEBPEQ15744 281 aa7.98□□□□□ -1.13
USP3-208ENST00000558285 ZNF750Q32MQ0 723 aa7.98□□□□□ -1.13
USP3-208ENST00000558285 CYP27C1Q4G0S4 372 aa7.98□□□□□ -1.13
USP3-208ENST00000558285 C1QL3Q5VWW1 255 aa7.98□□□□□ -1.13
USP3-208ENST00000558285 FAM91A1Q658Y4 838 aa7.98□□□□□ -1.13
USP3-208ENST00000558285 THOC7Q6I9Y2 204 aaKnown RBP7.98□□□□□ -1.13
USP3-208ENST00000558285 FAM71E1Q6IPT2 247 aa7.98□□□□□ -1.13
USP3-208ENST00000558285 TMEM81Q6P7N7 255 aa7.98□□□□□ -1.13
USP3-208ENST00000558285 Q6ZPB1 254 aaPredicted RBP7.98□□□□□ -1.13
USP3-208ENST00000558285 MDGA2Q7Z553 956 aa7.98□□□□□ -1.13
USP3-208ENST00000558285 PM20D2Q8IYS1 436 aa7.98□□□□□ -1.13
USP3-208ENST00000558285 SHISA5Q8N114 240 aa7.98□□□□□ -1.13
USP3-208ENST00000558285 ZNF321PQ8N8H1 164 aa7.98□□□□□ -1.13
USP3-208ENST00000558285 ZNF615Q8N8J6 731 aa7.98□□□□□ -1.13
USP3-208ENST00000558285 SCAIQ8N9R8 606 aa7.98□□□□□ -1.13
USP3-208ENST00000558285 FNDC5Q8NAU1 212 aa7.98□□□□□ -1.13
USP3-208ENST00000558285 OR52R1Q8NGF1 315 aa7.98□□□□□ -1.13
USP3-208ENST00000558285 FNDC8Q8TC99 324 aa7.98□□□□□ -1.13
USP3-208ENST00000558285 SPPL2AQ8TCT8 520 aa7.98□□□□□ -1.13
USP3-208ENST00000558285 ASB5Q8WWX0 329 aa7.98□□□□□ -1.13
USP3-208ENST00000558285 MOAP1Q96BY2 351 aa7.98□□□□□ -1.13
USP3-208ENST00000558285 TUBGCP3Q96CW5 907 aa7.98□□□□□ -1.13
USP3-208ENST00000558285 CNRIP1Q96F85 164 aaPredicted RBP7.98□□□□□ -1.13
USP3-208ENST00000558285 HES7Q9BYE0 225 aa7.98□□□□□ -1.13
USP3-208ENST00000558285 LIN28AQ9H9Z2 209 aaKnown RBP7.98□□□□□ -1.13
USP3-208ENST00000558285 ACSS1Q9NUB1 689 aaPredicted RBP7.98□□□□□ -1.13
USP3-208ENST00000558285 SH3BP4Q9P0V3 963 aa7.98□□□□□ -1.13
USP3-208ENST00000558285 SLC17A7Q9P2U7 560 aa7.98□□□□□ -1.13
USP3-208ENST00000558285 PLEKHB1Q9UF11 243 aaPredicted RBP7.98□□□□□ -1.13
USP3-208ENST00000558285 ACAD8Q9UKU7 415 aa7.98□□□□□ -1.13
USP3-208ENST00000558285 PCDHGB4Q9UN71 923 aa7.98□□□□□ -1.13
USP3-208ENST00000558285 RAP2CQ9Y3L5 183 aa7.98□□□□□ -1.13
USP3-208ENST00000558285 DNAJC15Q9Y5T4 150 aa7.98□□□□□ -1.13
USP3-208ENST00000558285 GCN1Q92616 2671 aaKnown RBP7.97□□□□□ -1.13
USP3-208ENST00000558285 LOC400499M0QZD8 3231 aa7.97□□□□□ -1.13
USP3-208ENST00000558285 TRGV5A0A0B4J1U4 118 aa7.97□□□□□ -1.13
USP3-208ENST00000558285 OR6C70A6NIJ9 312 aa7.97□□□□□ -1.13
USP3-208ENST00000558285 TMEM200CA6NKL6 621 aa7.97□□□□□ -1.13
USP3-208ENST00000558285 TRPC5OSA6NMA1 111 aa7.97□□□□□ -1.13
USP3-208ENST00000558285 MYO1GB0I1T2 1018 aa7.97□□□□□ -1.13
USP3-208ENST00000558285 PLOD2O00469 737 aa7.97□□□□□ -1.13
USP3-208ENST00000558285 AQP7O14520 342 aa7.97□□□□□ -1.13
USP3-208ENST00000558285 TO15178 435 aa7.97□□□□□ -1.13
USP3-208ENST00000558285 WDR1O75083 606 aa7.97□□□□□ -1.13
USP3-208ENST00000558285 REM1O75628 298 aa7.97□□□□□ -1.13
USP3-208ENST00000558285 GDF1P27539 372 aa7.97□□□□□ -1.13
USP3-208ENST00000558285 ABCD3P28288 659 aa7.97□□□□□ -1.13
USP3-208ENST00000558285 PRIM2P49643 509 aa7.97□□□□□ -1.13
USP3-208ENST00000558285 RPL14P50914 215 aaKnown RBP7.97□□□□□ -1.13
USP3-208ENST00000558285 FOXA1P55317 472 aa7.97□□□□□ -1.13
USP3-208ENST00000558285 ABCE1P61221 599 aaKnown RBP7.97□□□□□ -1.13
USP3-208ENST00000558285 RAE1P78406 368 aaKnown RBP7.97□□□□□ -1.13
USP3-208ENST00000558285 ART3Q13508 389 aa7.97□□□□□ -1.13
USP3-208ENST00000558285 TOMM20Q15388 145 aa7.97□□□□□ -1.13
USP3-208ENST00000558285 CHI3L2Q15782 390 aa7.97□□□□□ -1.13
USP3-208ENST00000558285 ZNF628Q5EBL2 1059 aa7.97□□□□□ -1.13
USP3-208ENST00000558285 ZCCHC12Q6PEW1 402 aa7.97□□□□□ -1.13
USP3-208ENST00000558285 SIAH3Q8IW03 269 aa7.97□□□□□ -1.13
USP3-208ENST00000558285 SLC15A3Q8IY34 581 aa7.97□□□□□ -1.13
USP3-208ENST00000558285 ZNF441Q8N8Z8 693 aa7.97□□□□□ -1.13
USP3-208ENST00000558285 OR5M3Q8NGP4 307 aa7.97□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms