RNA–Protein interactions for RNA: ENST00000558013.5

LDLR-207, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LDLR, Length 3,144 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-207ENST00000558013 ZNF221Q9UK13 617 aa12.08□□□□□ -0.48
LDLR-207ENST00000558013 LINC01553A4QN01 128 aa12.08□□□□□ -0.48
LDLR-207ENST00000558013 CDC42EP2O14613 210 aa12.08□□□□□ -0.48
LDLR-207ENST00000558013 HRO43593 1189 aa12.08□□□□□ -0.48
LDLR-207ENST00000558013 NFATC1O95644 943 aa12.08□□□□□ -0.48
LDLR-207ENST00000558013 HNRNPA1P09651 372 aaKnown RBP eCLIP12.08□□□□□ -0.48
LDLR-207ENST00000558013 ACP2P11117 423 aa12.08□□□□□ -0.48
LDLR-207ENST00000558013 STXBP1P61764 594 aaKnown RBP12.08□□□□□ -0.48
LDLR-207ENST00000558013 TBRG1Q3YBR2 411 aa12.08□□□□□ -0.48
LDLR-207ENST00000558013 PYDC2Q56P42 97 aa12.08□□□□□ -0.48
LDLR-207ENST00000558013 PSRC1Q6PGN9 363 aaPredicted RBP12.08□□□□□ -0.48
LDLR-207ENST00000558013 GDPGP1Q6ZNW5 385 aa12.08□□□□□ -0.48
LDLR-207ENST00000558013 FAM92BQ6ZTR7 304 aa12.08□□□□□ -0.48
LDLR-207ENST00000558013 TRIM69Q86WT6 500 aa12.08□□□□□ -0.48
LDLR-207ENST00000558013 NRMQ8IXM6 262 aa12.08□□□□□ -0.48
LDLR-207ENST00000558013 NUP43Q8NFH3 380 aa12.08□□□□□ -0.48
LDLR-207ENST00000558013 TEX47Q8TBZ9 253 aa12.08□□□□□ -0.48
LDLR-207ENST00000558013 HDAC8Q9BY41 377 aa12.08□□□□□ -0.48
LDLR-207ENST00000558013 PRRG3Q9BZD7 231 aa12.08□□□□□ -0.48
LDLR-207ENST00000558013 C11orf49Q9H6J7 331 aa12.08□□□□□ -0.48
LDLR-207ENST00000558013 NUFIP1Q9UHK0 495 aaKnown RBP12.08□□□□□ -0.48
LDLR-207ENST00000558013 CES1P1Q9UKY3 287 aa12.08□□□□□ -0.48
LDLR-207ENST00000558013 ZNF232Q9UNY5 417 aa12.08□□□□□ -0.48
LDLR-207ENST00000558013 IQCMA0A1B0GVH7 501 aa12.07□□□□□ -0.48
LDLR-207ENST00000558013 SYNDIG1LA6NDD5 238 aa12.07□□□□□ -0.48
LDLR-207ENST00000558013 PLA2G10O15496 165 aa12.07□□□□□ -0.48
LDLR-207ENST00000558013 PRODHO43272 600 aa12.07□□□□□ -0.48
LDLR-207ENST00000558013 UBXN7O94888 489 aa12.07□□□□□ -0.48
LDLR-207ENST00000558013 NR2F6P10588 404 aa12.07□□□□□ -0.48
LDLR-207ENST00000558013 DRD2P14416 443 aa12.07□□□□□ -0.48
LDLR-207ENST00000558013 CELP19835 753 aa12.07□□□□□ -0.48
LDLR-207ENST00000558013 BTN3A2P78410 334 aa12.07□□□□□ -0.48
LDLR-207ENST00000558013 ID2Q02363 134 aa12.07□□□□□ -0.48
LDLR-207ENST00000558013 FAM214AQ32MH5 1076 aa12.07□□□□□ -0.48
LDLR-207ENST00000558013 PLK5Q496M5 336 aa12.07□□□□□ -0.48
LDLR-207ENST00000558013 CD300LDQ6UXZ3 194 aa12.07□□□□□ -0.48
LDLR-207ENST00000558013 OR2L3Q8NG85 312 aa12.07□□□□□ -0.48
LDLR-207ENST00000558013 SMAP2Q8WU79 429 aaPredicted RBP12.07□□□□□ -0.48
LDLR-207ENST00000558013 KCTD7Q96MP8 289 aa12.07□□□□□ -0.48
LDLR-207ENST00000558013 NECTIN4Q96NY8 510 aa12.07□□□□□ -0.48
LDLR-207ENST00000558013 TEX101Q9BY14 249 aa12.07□□□□□ -0.48
LDLR-207ENST00000558013 ENKD1Q9H0I2 346 aa12.07□□□□□ -0.48
LDLR-207ENST00000558013 PCBD2Q9H0N5 130 aa12.07□□□□□ -0.48
LDLR-207ENST00000558013 MED20Q9H944 212 aa12.07□□□□□ -0.48
LDLR-207ENST00000558013 BCL2L10Q9HD36 194 aa12.07□□□□□ -0.48
LDLR-207ENST00000558013 RANGRFQ9HD47 186 aaPredicted RBP12.07□□□□□ -0.48
LDLR-207ENST00000558013 NDRG2Q9UN36 371 aaKnown RBP12.07□□□□□ -0.48
LDLR-207ENST00000558013 LIPT1Q9Y234 373 aa12.07□□□□□ -0.48
LDLR-207ENST00000558013 ZBTB32Q9Y2Y4 487 aaPredicted RBP12.07□□□□□ -0.48
LDLR-207ENST00000558013 HPGDSO60760 199 aa12.07□□□□□ -0.48
LDLR-207ENST00000558013 SEC13P55735 322 aa12.07□□□□□ -0.48
LDLR-207ENST00000558013 BNC1Q01954 994 aa12.07□□□□□ -0.48
LDLR-207ENST00000558013 TGM3Q08188 693 aa12.07□□□□□ -0.48
LDLR-207ENST00000558013 KRR1Q13601 381 aaKnown RBP12.07□□□□□ -0.48
LDLR-207ENST00000558013 LRRC32Q14392 662 aa12.07□□□□□ -0.48
LDLR-207ENST00000558013 MLC1Q15049 377 aa12.07□□□□□ -0.48
LDLR-207ENST00000558013 CST6Q15828 149 aa12.07□□□□□ -0.48
LDLR-207ENST00000558013 ZIC1Q15915 447 aa12.07□□□□□ -0.48
LDLR-207ENST00000558013 PAMR1Q6UXH9 720 aa12.07□□□□□ -0.48
LDLR-207ENST00000558013 RAB43Q86YS6 212 aa12.07□□□□□ -0.48
LDLR-207ENST00000558013 OR4E2Q8NGC2 313 aa12.07□□□□□ -0.48
LDLR-207ENST00000558013 BBS10Q8TAM1 723 aa12.07□□□□□ -0.48
LDLR-207ENST00000558013 DIO2Q92813 273 aa12.07□□□□□ -0.48
LDLR-207ENST00000558013 NACC2Q96BF6 587 aa12.07□□□□□ -0.48
LDLR-207ENST00000558013 ELP4Q96EB1 424 aa12.07□□□□□ -0.48
LDLR-207ENST00000558013 SLC35A4Q96G79 324 aa12.07□□□□□ -0.48
LDLR-207ENST00000558013 TBX5Q99593 518 aa12.07□□□□□ -0.48
LDLR-207ENST00000558013 FAIM2Q9BWQ8 316 aa12.07□□□□□ -0.48
LDLR-207ENST00000558013 PCDHGB2Q9Y5G2 931 aa12.07□□□□□ -0.48
LDLR-207ENST00000558013 CD8B2A6NJW9 211 aa12.06□□□□□ -0.48
LDLR-207ENST00000558013 SOCS6O14544 535 aa12.06□□□□□ -0.48
LDLR-207ENST00000558013 IDH3BO43837 385 aa12.06□□□□□ -0.48
LDLR-207ENST00000558013 KAT7O95251 611 aa12.06□□□□□ -0.48
LDLR-207ENST00000558013 CEACAM5P06731 702 aa12.06□□□□□ -0.48
LDLR-207ENST00000558013 ASGR2P07307 311 aa12.06□□□□□ -0.48
LDLR-207ENST00000558013 CD8BP10966 210 aa12.06□□□□□ -0.48
LDLR-207ENST00000558013 GJA4P35212 333 aa12.06□□□□□ -0.48
LDLR-207ENST00000558013 KIR2DL3P43628 341 aa12.06□□□□□ -0.48
LDLR-207ENST00000558013 OMPP47874 163 aa12.06□□□□□ -0.48
LDLR-207ENST00000558013 SENP5Q96HI0 755 aaPredicted RBP12.06□□□□□ -0.48
LDLR-207ENST00000558013 ISG20L2Q9H9L3 353 aaKnown RBP12.06□□□□□ -0.48
LDLR-207ENST00000558013 ADAM29Q9UKF5 820 aa12.06□□□□□ -0.48
LDLR-207ENST00000558013 CA5BQ9Y2D0 317 aa12.06□□□□□ -0.48
LDLR-207ENST00000558013 A0A1B0GVC2 190 aa12.06□□□□□ -0.48
LDLR-207ENST00000558013 A6NIN4 97 aa12.06□□□□□ -0.48
LDLR-207ENST00000558013 CASKO14936 926 aa12.06□□□□□ -0.48
LDLR-207ENST00000558013 SLC31A1O15431 190 aa12.06□□□□□ -0.48
LDLR-207ENST00000558013 IL1AP01583 271 aa12.06□□□□□ -0.48
LDLR-207ENST00000558013 F3P13726 295 aa12.06□□□□□ -0.48
LDLR-207ENST00000558013 PRG2P13727 222 aa12.06□□□□□ -0.48
LDLR-207ENST00000558013 DDX5P17844 614 aaKnown RBP12.06□□□□□ -0.48
LDLR-207ENST00000558013 SLC9A3P48764 834 aa12.06□□□□□ -0.48
LDLR-207ENST00000558013 CDH11P55287 796 aa12.06□□□□□ -0.48
LDLR-207ENST00000558013 KHDRBS1Q07666 443 aaKnown RBP eCLIP12.06□□□□□ -0.48
LDLR-207ENST00000558013 AGERQ15109 404 aa12.06□□□□□ -0.48
LDLR-207ENST00000558013 C3orf38Q5JPI3 329 aa12.06□□□□□ -0.48
LDLR-207ENST00000558013 SLC35F1Q5T1Q4 408 aa12.06□□□□□ -0.48
LDLR-207ENST00000558013 PDZK1Q5T2W1 519 aa12.06□□□□□ -0.48
LDLR-207ENST00000558013 MRM1Q6IN84 353 aaKnown RBP12.06□□□□□ -0.48
LDLR-207ENST00000558013 KIAA1211LQ6NV74 962 aa12.06□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms