RNA–Protein interactions for RNA: ENST00000557005.1

SYNE2-223, Transcript of spectrin repeat containing nuclear envelope protein 2, human

TSL 2

Gene SYNE2, Length 5,804 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SYNE2-223	ENST00000557005	CSTF2T	Q9H0L4	616 aa	Known RBP eCLIP	4.71	□□□□□ -1.65
SYNE2-223	ENST00000557005	ADAP2	Q9NPF8	381 aa		4.71	□□□□□ -1.65
SYNE2-223	ENST00000557005	MAN2C1	Q9NTJ4	1040 aa		4.71	□□□□□ -1.65
SYNE2-223	ENST00000557005	SLC23A1	Q9UHI7	598 aa		4.71	□□□□□ -1.65
SYNE2-223	ENST00000557005	ASB4	Q9Y574	426 aa		4.71	□□□□□ -1.65
SYNE2-223	ENST00000557005	LGALS8	O00214	317 aa		4.71	□□□□□ -1.66
SYNE2-223	ENST00000557005	IL1A	P01583	271 aa		4.71	□□□□□ -1.66
SYNE2-223	ENST00000557005	PRNP	P04156	253 aa		4.71	□□□□□ -1.66
SYNE2-223	ENST00000557005	TP53	P04637	393 aa	Predicted RBP	4.71	□□□□□ -1.66
SYNE2-223	ENST00000557005	EIF4E	P06730	217 aa	Known RBP	4.71	□□□□□ -1.66
SYNE2-223	ENST00000557005	TACSTD2	P09758	323 aa		4.71	□□□□□ -1.66
SYNE2-223	ENST00000557005	CSF3	P09919	207 aa		4.71	□□□□□ -1.66
SYNE2-223	ENST00000557005	LIPC	P11150	499 aa		4.71	□□□□□ -1.66
SYNE2-223	ENST00000557005	CERS1	P27544	350 aa		4.71	□□□□□ -1.66
SYNE2-223	ENST00000557005	PKLR	P30613	574 aa		4.71	□□□□□ -1.66
SYNE2-223	ENST00000557005	HOXD11	P31277	338 aa	Predicted RBP	4.71	□□□□□ -1.66
SYNE2-223	ENST00000557005	GRK6	P43250	576 aa		4.71	□□□□□ -1.66
SYNE2-223	ENST00000557005	GCGR	P47871	477 aa		4.71	□□□□□ -1.66
SYNE2-223	ENST00000557005	RPL34	P49207	117 aa	Known RBP	4.71	□□□□□ -1.66
SYNE2-223	ENST00000557005	YBX1	P67809	324 aa	Known RBP	4.71	□□□□□ -1.66
SYNE2-223	ENST00000557005	HBA1	P69905	142 aa		4.71	□□□□□ -1.66
SYNE2-223	ENST00000557005	C18orf63	Q68DL7	685 aa		4.71	□□□□□ -1.66
SYNE2-223	ENST00000557005	ALKAL2	Q6UX46	152 aa		4.71	□□□□□ -1.66
SYNE2-223	ENST00000557005	KIAA1324	Q6UXG2	1013 aa	Known RBP	4.71	□□□□□ -1.66
SYNE2-223	ENST00000557005	HSD11B1L	Q7Z5J1	315 aa		4.71	□□□□□ -1.66
SYNE2-223	ENST00000557005	TMCO2	Q7Z6W1	182 aa	Predicted RBP	4.71	□□□□□ -1.66
SYNE2-223	ENST00000557005	TMEM173	Q86WV6	379 aa	Predicted RBP	4.71	□□□□□ -1.66
SYNE2-223	ENST00000557005	OR4N5	Q8IXE1	308 aa		4.71	□□□□□ -1.66
SYNE2-223	ENST00000557005	OR4E2	Q8NGC2	313 aa		4.71	□□□□□ -1.66
SYNE2-223	ENST00000557005	ADAMTS19	Q8TE59	1207 aa		4.71	□□□□□ -1.66
SYNE2-223	ENST00000557005	KCNN1	Q92952	543 aa		4.71	□□□□□ -1.66
SYNE2-223	ENST00000557005	AHCYL2	Q96HN2	611 aa	Known RBP	4.71	□□□□□ -1.66
SYNE2-223	ENST00000557005	ZBED3	Q96IU2	234 aa	Predicted RBP	4.71	□□□□□ -1.66
SYNE2-223	ENST00000557005	MAP6	Q96JE9	813 aa		4.71	□□□□□ -1.66
SYNE2-223	ENST00000557005	QRSL1	Q9H0R6	528 aa	Known RBP	4.71	□□□□□ -1.66
SYNE2-223	ENST00000557005	METTL17	Q9H7H0	456 aa	Predicted RBP	4.71	□□□□□ -1.66
SYNE2-223	ENST00000557005	RC3H2	Q9HBD1	1191 aa	Known RBP	4.71	□□□□□ -1.66
SYNE2-223	ENST00000557005	AP1M2	Q9Y6Q5	423 aa		4.71	□□□□□ -1.66
SYNE2-223	ENST00000557005	TBC1D3D	A0A087WVF3	549 aa		4.71	□□□□□ -1.66
SYNE2-223	ENST00000557005	TBC1D3I	A0A087WXS9	549 aa		4.71	□□□□□ -1.66
SYNE2-223	ENST00000557005	TBC1D3E	A0A087X179	549 aa		4.71	□□□□□ -1.66
SYNE2-223	ENST00000557005	TBC1D3K	A0A087X1G2	549 aa		4.71	□□□□□ -1.66
SYNE2-223	ENST00000557005	TBC1D3F	A6NER0	549 aa	Predicted RBP	4.71	□□□□□ -1.66
SYNE2-223	ENST00000557005	TBC1D3L	B9A6J9	549 aa		4.71	□□□□□ -1.66
SYNE2-223	ENST00000557005	EEF1E1-BLOC1S5	C9J1V9	151 aa		4.71	□□□□□ -1.66
SYNE2-223	ENST00000557005		H7C2Y5	167 aa		4.71	□□□□□ -1.66
SYNE2-223	ENST00000557005	RAD1	O60671	282 aa		4.71	□□□□□ -1.66
SYNE2-223	ENST00000557005	GYPB	P06028	91 aa		4.71	□□□□□ -1.66
SYNE2-223	ENST00000557005	PROS1	P07225	676 aa		4.71	□□□□□ -1.66
SYNE2-223	ENST00000557005	TBC1D3H	P0C7X1	549 aa		4.71	□□□□□ -1.66
SYNE2-223	ENST00000557005	SNRPB	P14678	240 aa	Known RBP	4.71	□□□□□ -1.66
SYNE2-223	ENST00000557005	ZNF30	P17039	623 aa		4.71	□□□□□ -1.66
SYNE2-223	ENST00000557005	AOAH	P28039	575 aa		4.71	□□□□□ -1.66
SYNE2-223	ENST00000557005	IL12B	P29460	328 aa		4.71	□□□□□ -1.66
SYNE2-223	ENST00000557005	LSS	P48449	732 aa		4.71	□□□□□ -1.66
SYNE2-223	ENST00000557005	SLC35A2	P78381	396 aa		4.71	□□□□□ -1.66
SYNE2-223	ENST00000557005	VEZF1	Q14119	521 aa		4.71	□□□□□ -1.66
SYNE2-223	ENST00000557005	TOMM20	Q15388	145 aa		4.71	□□□□□ -1.66
SYNE2-223	ENST00000557005	OCLN	Q16625	522 aa		4.71	□□□□□ -1.66
SYNE2-223	ENST00000557005	LRRC26	Q2I0M4	334 aa		4.71	□□□□□ -1.66
SYNE2-223	ENST00000557005	ENTPD8	Q5MY95	495 aa		4.71	□□□□□ -1.66
SYNE2-223	ENST00000557005	RTP2	Q5QGT7	225 aa		4.71	□□□□□ -1.66
SYNE2-223	ENST00000557005	MANEAL	Q5VSG8	457 aa		4.71	□□□□□ -1.66
SYNE2-223	ENST00000557005	TBC1D3G	Q6DHY5	549 aa		4.71	□□□□□ -1.66
SYNE2-223	ENST00000557005	TBC1D3C	Q6IPX1	549 aa		4.71	□□□□□ -1.66
SYNE2-223	ENST00000557005	TBC1D3	Q8IZP1	549 aa	Predicted RBP	4.71	□□□□□ -1.66
SYNE2-223	ENST00000557005	HDDC3	Q8N4P3	179 aa		4.71	□□□□□ -1.66
SYNE2-223	ENST00000557005	NANOGP1	Q8N7R0	232 aa		4.71	□□□□□ -1.66
SYNE2-223	ENST00000557005	ZFAND1	Q8TCF1	268 aa		4.71	□□□□□ -1.66
SYNE2-223	ENST00000557005	OVCA2	Q8WZ82	227 aa		4.71	□□□□□ -1.66
SYNE2-223	ENST00000557005	CDS1	Q92903	461 aa		4.71	□□□□□ -1.66
SYNE2-223	ENST00000557005	HSPA12B	Q96MM6	686 aa		4.71	□□□□□ -1.66
SYNE2-223	ENST00000557005	GAL3ST4	Q96RP7	486 aa		4.71	□□□□□ -1.66
SYNE2-223	ENST00000557005	TMEM175	Q9BSA9	504 aa		4.71	□□□□□ -1.66
SYNE2-223	ENST00000557005	NOX3	Q9HBY0	568 aa		4.71	□□□□□ -1.66
SYNE2-223	ENST00000557005	CSNK1G1	Q9HCP0	422 aa		4.71	□□□□□ -1.66
SYNE2-223	ENST00000557005	CD93	Q9NPY3	652 aa		4.71	□□□□□ -1.66
SYNE2-223	ENST00000557005	GSKIP	Q9P0R6	139 aa		4.71	□□□□□ -1.66
SYNE2-223	ENST00000557005	CXXC1	Q9P0U4	656 aa	Predicted RBP	4.71	□□□□□ -1.66
SYNE2-223	ENST00000557005	NDRG4	Q9ULP0	352 aa	Known RBP	4.71	□□□□□ -1.66
SYNE2-223	ENST00000557005	ARID2	Q68CP9	1835 aa		4.71	□□□□□ -1.66
SYNE2-223	ENST00000557005	DNAJC25-GNG10	A0A024R161	153 aa		4.71	□□□□□ -1.66
SYNE2-223	ENST00000557005		A0A1B0GV50	99 aa		4.71	□□□□□ -1.66
SYNE2-223	ENST00000557005	hCG_1807616	A0A1W2PRN6	198 aa		4.71	□□□□□ -1.66
SYNE2-223	ENST00000557005	ZNF840P	A6NDX5	716 aa		4.71	□□□□□ -1.66
SYNE2-223	ENST00000557005	FZD7	O75084	574 aa		4.71	□□□□□ -1.66
SYNE2-223	ENST00000557005	SLC35G6	P0C7Q6	338 aa		4.71	□□□□□ -1.66
SYNE2-223	ENST00000557005	ADH5	P11766	374 aa		4.71	□□□□□ -1.66
SYNE2-223	ENST00000557005	MTHFD2	P13995	350 aa		4.71	□□□□□ -1.66
SYNE2-223	ENST00000557005	TYR	P14679	529 aa		4.71	□□□□□ -1.66
SYNE2-223	ENST00000557005	ELK1	P19419	428 aa		4.71	□□□□□ -1.66
SYNE2-223	ENST00000557005	AK4	P27144	223 aa	Predicted RBP	4.71	□□□□□ -1.66
SYNE2-223	ENST00000557005	PSMB5	P28074	263 aa		4.71	□□□□□ -1.66
SYNE2-223	ENST00000557005	ACADL	P28330	430 aa		4.71	□□□□□ -1.66
SYNE2-223	ENST00000557005	EPHA2	P29317	976 aa		4.71	□□□□□ -1.66
SYNE2-223	ENST00000557005	GABRA5	P31644	462 aa		4.71	□□□□□ -1.66
SYNE2-223	ENST00000557005	SOX18	P35713	384 aa		4.71	□□□□□ -1.66
SYNE2-223	ENST00000557005	TAS2R38	P59533	333 aa		4.71	□□□□□ -1.66
SYNE2-223	ENST00000557005	ADAM8	P78325	824 aa		4.71	□□□□□ -1.66
SYNE2-223	ENST00000557005	E2F1	Q01094	437 aa		4.71	□□□□□ -1.66

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