RNA–Protein interactions for RNA: ENST00000556825.5

SHMT2-226, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 2,215 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-226ENST00000556825 HACL1Q9UJ83 578 aa13.04□□□□□ -0.32
SHMT2-226ENST00000556825 KCTD3Q9Y597 815 aa13.04□□□□□ -0.32
SHMT2-226ENST00000556825 TRAPPC13A5PLN9 417 aa13.03□□□□□ -0.32
SHMT2-226ENST00000556825 DDX39AO00148 427 aaKnown RBP13.03□□□□□ -0.32
SHMT2-226ENST00000556825 LDLRAD4O15165 306 aa13.03□□□□□ -0.32
SHMT2-226ENST00000556825 GATBO75879 557 aaKnown RBP13.03□□□□□ -0.32
SHMT2-226ENST00000556825 F12P00748 615 aaPredicted RBP13.03□□□□□ -0.32
SHMT2-226ENST00000556825 LINC00614P0C842 121 aa13.03□□□□□ -0.32
SHMT2-226ENST00000556825 HTR2AP28223 471 aa13.03□□□□□ -0.32
SHMT2-226ENST00000556825 FGF9P31371 208 aaPredicted RBP13.03□□□□□ -0.32
SHMT2-226ENST00000556825 PPM1AP35813 382 aa13.03□□□□□ -0.32
SHMT2-226ENST00000556825 CLDN8P56748 225 aa13.03□□□□□ -0.32
SHMT2-226ENST00000556825 NAE1Q13564 534 aa13.03□□□□□ -0.32
SHMT2-226ENST00000556825 CLINT1Q14677 625 aa13.03□□□□□ -0.32
SHMT2-226ENST00000556825 MSANTD1Q6ZTZ1 278 aa13.03□□□□□ -0.32
SHMT2-226ENST00000556825 GPRC5AQ8NFJ5 357 aa13.03□□□□□ -0.32
SHMT2-226ENST00000556825 SP7Q8TDD2 431 aaPredicted RBP13.03□□□□□ -0.32
SHMT2-226ENST00000556825 WFIKKN2Q8TEU8 576 aa13.03□□□□□ -0.32
SHMT2-226ENST00000556825 RSRP1Q9BUV0 290 aa13.03□□□□□ -0.32
SHMT2-226ENST00000556825 SEC11CQ9BY50 192 aa13.03□□□□□ -0.32
SHMT2-226ENST00000556825 OR51B6Q9H340 312 aa13.03□□□□□ -0.32
SHMT2-226ENST00000556825 SPACA1Q9HBV2 294 aa13.03□□□□□ -0.32
SHMT2-226ENST00000556825 FZD3Q9NPG1 666 aa13.03□□□□□ -0.32
SHMT2-226ENST00000556825 ACSS1Q9NUB1 689 aaPredicted RBP13.03□□□□□ -0.32
SHMT2-226ENST00000556825 C2orf42Q9NWW7 574 aa13.03□□□□□ -0.32
SHMT2-226ENST00000556825 TEX10Q9NXF1 929 aaPredicted RBP13.03□□□□□ -0.32
SHMT2-226ENST00000556825 FBXL3Q9UKT7 428 aa13.03□□□□□ -0.32
SHMT2-226ENST00000556825 PRKAB1Q9Y478 270 aa13.03□□□□□ -0.32
SHMT2-226ENST00000556825 OR10H1Q9Y4A9 318 aa13.03□□□□□ -0.32
SHMT2-226ENST00000556825 USP3Q9Y6I4 520 aa13.03□□□□□ -0.32
SHMT2-226ENST00000556825 TMEM150BA6NC51 233 aa13.03□□□□□ -0.32
SHMT2-226ENST00000556825 GLTPD2A6NH11 291 aa13.03□□□□□ -0.32
SHMT2-226ENST00000556825 DDTLA6NHG4 134 aaPredicted RBP13.03□□□□□ -0.32
SHMT2-226ENST00000556825 MKRN2OSH3BPM6 223 aa13.03□□□□□ -0.32
SHMT2-226ENST00000556825 MT-ND4LP03901 98 aa13.03□□□□□ -0.32
SHMT2-226ENST00000556825 IQCF3P0C7M6 154 aa13.03□□□□□ -0.32
SHMT2-226ENST00000556825 UROSP10746 265 aa13.03□□□□□ -0.32
SHMT2-226ENST00000556825 PSMA6P60900 246 aaKnown RBP13.03□□□□□ -0.32
SHMT2-226ENST00000556825 RPS25P62851 125 aaKnown RBP13.03□□□□□ -0.32
SHMT2-226ENST00000556825 INPP5JQ15735 1006 aaPredicted RBP13.03□□□□□ -0.32
SHMT2-226ENST00000556825 SLC30A6Q6NXT4 461 aa13.03□□□□□ -0.32
SHMT2-226ENST00000556825 PTCHD4Q6ZW05 846 aa13.03□□□□□ -0.32
SHMT2-226ENST00000556825 LAPTM4BQ86VI4 370 aa13.03□□□□□ -0.32
SHMT2-226ENST00000556825 GPR135Q8IZ08 494 aa13.03□□□□□ -0.32
SHMT2-226ENST00000556825 TOMM5Q8N4H5 51 aa13.03□□□□□ -0.32
SHMT2-226ENST00000556825 FAM46DQ8NEK8 389 aa13.03□□□□□ -0.32
SHMT2-226ENST00000556825 EXT2Q93063 718 aa13.03□□□□□ -0.32
SHMT2-226ENST00000556825 MED8Q96G25 268 aa13.03□□□□□ -0.32
SHMT2-226ENST00000556825 PIWIL1Q96J94 861 aaKnown RBP13.03□□□□□ -0.32
SHMT2-226ENST00000556825 CAMK1GQ96NX5 476 aa13.03□□□□□ -0.32
SHMT2-226ENST00000556825 NAA11Q9BSU3 229 aaPredicted RBP13.03□□□□□ -0.32
SHMT2-226ENST00000556825 CHST5Q9GZS9 411 aa13.03□□□□□ -0.32
SHMT2-226ENST00000556825 BCO1Q9HAY6 547 aa13.03□□□□□ -0.32
SHMT2-226ENST00000556825 CACYBPQ9HB71 228 aaKnown RBP13.03□□□□□ -0.32
SHMT2-226ENST00000556825 CA10Q9NS85 328 aa13.03□□□□□ -0.32
SHMT2-226ENST00000556825 TRBV5-3A0A0A0MS03 114 aa13.02□□□□□ -0.33
SHMT2-226ENST00000556825 A6NCN8 305 aa13.02□□□□□ -0.33
SHMT2-226ENST00000556825 GABRR3A8MPY1 467 aa13.02□□□□□ -0.33
SHMT2-226ENST00000556825 EIF4E2O60573 245 aaKnown RBP13.02□□□□□ -0.33
SHMT2-226ENST00000556825 OR4E1P0C645 316 aa13.02□□□□□ -0.33
SHMT2-226ENST00000556825 ZNF35P13682 527 aa13.02□□□□□ -0.33
SHMT2-226ENST00000556825 CPN1P15169 458 aa13.02□□□□□ -0.33
SHMT2-226ENST00000556825 S100A2P29034 98 aa13.02□□□□□ -0.33
SHMT2-226ENST00000556825 MPIP34949 423 aa13.02□□□□□ -0.33
SHMT2-226ENST00000556825 PITPNBP48739 271 aa13.02□□□□□ -0.33
SHMT2-226ENST00000556825 CARD18P57730 90 aa13.02□□□□□ -0.33
SHMT2-226ENST00000556825 SIM1P81133 766 aaPredicted RBP13.02□□□□□ -0.33
SHMT2-226ENST00000556825 GAB1Q13480 694 aa13.02□□□□□ -0.33
SHMT2-226ENST00000556825 NCMAPQ5T1S8 102 aa13.02□□□□□ -0.33
SHMT2-226ENST00000556825 CLEC9AQ6UXN8 241 aa13.02□□□□□ -0.33
SHMT2-226ENST00000556825 TMIGD1Q6UXZ0 262 aa13.02□□□□□ -0.33
SHMT2-226ENST00000556825 SIAH3Q8IW03 269 aa13.02□□□□□ -0.33
SHMT2-226ENST00000556825 SLC5A8Q8N695 610 aa13.02□□□□□ -0.33
SHMT2-226ENST00000556825 ZNF248Q8NDW4 579 aa13.02□□□□□ -0.33
SHMT2-226ENST00000556825 OR56A3Q8NH54 315 aa13.02□□□□□ -0.33
SHMT2-226ENST00000556825 ACOT12Q8WYK0 555 aa13.02□□□□□ -0.33
SHMT2-226ENST00000556825 SLC25A28Q96A46 364 aa13.02□□□□□ -0.33
SHMT2-226ENST00000556825 C3orf49Q96BT1 292 aa13.02□□□□□ -0.33
SHMT2-226ENST00000556825 CHFRQ96EP1 664 aa13.02□□□□□ -0.33
SHMT2-226ENST00000556825 C14orf79Q96F83 325 aa13.02□□□□□ -0.33
SHMT2-226ENST00000556825 FAM117AQ9C073 453 aa13.02□□□□□ -0.33
SHMT2-226ENST00000556825 NRBP2Q9NSY0 501 aa13.02□□□□□ -0.33
SHMT2-226ENST00000556825 NEU3Q9UQ49 428 aa13.02□□□□□ -0.33
SHMT2-226ENST00000556825 SF3B6Q9Y3B4 125 aaKnown RBP13.02□□□□□ -0.33
SHMT2-226ENST00000556825 TMEM184BQ9Y519 407 aaPredicted RBP13.02□□□□□ -0.33
SHMT2-226ENST00000556825 STYXL1Q9Y6J8 313 aa13.02□□□□□ -0.33
SHMT2-226ENST00000556825 NPM3O75607 178 aaKnown RBP13.01□□□□□ -0.33
SHMT2-226ENST00000556825 WISP3O95389 354 aaPredicted RBP13.01□□□□□ -0.33
SHMT2-226ENST00000556825 RHOP08100 348 aa13.01□□□□□ -0.33
SHMT2-226ENST00000556825 HOXB5P09067 269 aa13.01□□□□□ -0.33
SHMT2-226ENST00000556825 STAG3L1P0CL83 205 aa13.01□□□□□ -0.33
SHMT2-226ENST00000556825 ACPPP15309 386 aa13.01□□□□□ -0.33
SHMT2-226ENST00000556825 ZNF25P17030 456 aaPredicted RBP13.01□□□□□ -0.33
SHMT2-226ENST00000556825 GOT1P17174 413 aa13.01□□□□□ -0.33
SHMT2-226ENST00000556825 HOXA5P20719 270 aa13.01□□□□□ -0.33
SHMT2-226ENST00000556825 RBMS1P29558 406 aaKnown RBP13.01□□□□□ -0.33
SHMT2-226ENST00000556825 GKP32189 559 aa13.01□□□□□ -0.33
SHMT2-226ENST00000556825 AKR1C2P52895 323 aa13.01□□□□□ -0.33
SHMT2-226ENST00000556825 LSM6P62312 80 aaKnown RBP13.01□□□□□ -0.33
SHMT2-226ENST00000556825 AKR1C1Q04828 323 aa13.01□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 53.6 ms