RNA–Protein interactions for RNA: ENST00000550611.1

LIMA1-206, Transcript of LIM domain and actin binding 1, humanhuman

TSL 4

Gene LIMA1, Length 543 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-206ENST00000550611 PAMR1Q6UXH9 720 aa3.26□□□□□ -1.89
LIMA1-206ENST00000550611 CYHR1Q6ZMK1 362 aa3.26□□□□□ -1.89
LIMA1-206ENST00000550611 ZNF813Q6ZN06 617 aa3.26□□□□□ -1.89
LIMA1-206ENST00000550611 MDGA2Q7Z553 956 aa3.26□□□□□ -1.89
LIMA1-206ENST00000550611 LDB1Q86U70 411 aaPredicted RBP3.26□□□□□ -1.89
LIMA1-206ENST00000550611 LRRC6Q86X45 466 aa3.26□□□□□ -1.89
LIMA1-206ENST00000550611 PLD3Q8IV08 490 aa3.26□□□□□ -1.89
LIMA1-206ENST00000550611 CDKL3Q8IVW4 592 aaPredicted RBP3.26□□□□□ -1.89
LIMA1-206ENST00000550611 CCDC28AQ8IWP9 274 aa3.26□□□□□ -1.89
LIMA1-206ENST00000550611 GALNT4Q8N4A0 578 aa3.26□□□□□ -1.89
LIMA1-206ENST00000550611 NKAPQ8N5F7 415 aaKnown RBP3.26□□□□□ -1.89
LIMA1-206ENST00000550611 APCDD1LQ8NCL9 501 aa3.26□□□□□ -1.89
LIMA1-206ENST00000550611 MAPK1IP1LQ8NDC0 245 aa3.26□□□□□ -1.89
LIMA1-206ENST00000550611 OR8K1Q8NGG5 319 aa3.26□□□□□ -1.89
LIMA1-206ENST00000550611 OR52K1Q8NGK4 314 aa3.26□□□□□ -1.89
LIMA1-206ENST00000550611 MAGEC3Q8TD91 643 aa3.26□□□□□ -1.89
LIMA1-206ENST00000550611 FAM222BQ8WU58 562 aa3.26□□□□□ -1.89
LIMA1-206ENST00000550611 PEX13Q92968 403 aa3.26□□□□□ -1.89
LIMA1-206ENST00000550611 TSLPQ969D9 159 aa3.26□□□□□ -1.89
LIMA1-206ENST00000550611 RMND5BQ96G75 393 aaPredicted RBP3.26□□□□□ -1.89
LIMA1-206ENST00000550611 PRAP1Q96NZ9 151 aa3.26□□□□□ -1.89
LIMA1-206ENST00000550611 BIRC8Q96P09 236 aa3.26□□□□□ -1.89
LIMA1-206ENST00000550611 OR1F2PQ96R84 312 aa3.26□□□□□ -1.89
LIMA1-206ENST00000550611 PKP4Q99569 1192 aa3.26□□□□□ -1.89
LIMA1-206ENST00000550611 LPAR4Q99677 370 aa3.26□□□□□ -1.89
LIMA1-206ENST00000550611 SH3GL2Q99962 352 aa3.26□□□□□ -1.89
LIMA1-206ENST00000550611 MACROD1Q9BQ69 325 aa3.26□□□□□ -1.89
LIMA1-206ENST00000550611 FERMT1Q9BQL6 677 aa3.26□□□□□ -1.89
LIMA1-206ENST00000550611 ACAT2Q9BWD1 397 aa3.26□□□□□ -1.89
LIMA1-206ENST00000550611 SORBS1Q9BX66 1292 aaKnown RBP3.26□□□□□ -1.89
LIMA1-206ENST00000550611 TSSK1BQ9BXA7 367 aa3.26□□□□□ -1.89
LIMA1-206ENST00000550611 OSBPL8Q9BZF1 889 aa3.26□□□□□ -1.89
LIMA1-206ENST00000550611 NAT10Q9H0A0 1025 aaKnown RBP3.26□□□□□ -1.89
LIMA1-206ENST00000550611 DEFB127Q9H1M4 99 aa3.26□□□□□ -1.89
LIMA1-206ENST00000550611 GOLPH3Q9H4A6 298 aa3.26□□□□□ -1.89
LIMA1-206ENST00000550611 LRRC40Q9H9A6 602 aa3.26□□□□□ -1.89
LIMA1-206ENST00000550611 PNPLA3Q9NST1 481 aa3.26□□□□□ -1.89
LIMA1-206ENST00000550611 TMEM184CQ9NVA4 438 aa3.26□□□□□ -1.89
LIMA1-206ENST00000550611 HCN3Q9P1Z3 774 aa3.26□□□□□ -1.89
LIMA1-206ENST00000550611 MARCH4Q9P2E8 410 aaPredicted RBP3.26□□□□□ -1.89
LIMA1-206ENST00000550611 GALPQ9UBC7 116 aa3.26□□□□□ -1.89
LIMA1-206ENST00000550611 TAC3Q9UHF0 121 aa3.26□□□□□ -1.89
LIMA1-206ENST00000550611 PCYOX1Q9UHG3 505 aa3.26□□□□□ -1.89
LIMA1-206ENST00000550611 ZNF223Q9UK11 482 aaPredicted RBP3.26□□□□□ -1.89
LIMA1-206ENST00000550611 PPIEQ9UNP9 301 aaKnown RBP3.26□□□□□ -1.89
LIMA1-206ENST00000550611 RUVBL2Q9Y230 463 aaKnown RBP3.26□□□□□ -1.89
LIMA1-206ENST00000550611 KLF13Q9Y2Y9 288 aaPredicted RBP3.26□□□□□ -1.89
LIMA1-206ENST00000550611 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP3.26□□□□□ -1.894e-6■■■■□ 22
LIMA1-206ENST00000550611 SLC22A7Q9Y694 548 aa3.26□□□□□ -1.89
LIMA1-206ENST00000550611 NUP210LQ5VU65 1888 aa3.26□□□□□ -1.89
LIMA1-206ENST00000550611 IGKV3D-11A0A0A0MRZ8 115 aa3.25□□□□□ -1.89
LIMA1-206ENST00000550611 A0A0G2JK05 382 aa3.25□□□□□ -1.89
LIMA1-206ENST00000550611 A0A1W2PPR1 153 aa3.25□□□□□ -1.89
LIMA1-206ENST00000550611 SAGE2PA6NJ88 616 aa3.25□□□□□ -1.89
LIMA1-206ENST00000550611 NPIPA2E9PIF3 369 aa3.25□□□□□ -1.89
LIMA1-206ENST00000550611 NPIPA3F8WFD2 350 aa3.25□□□□□ -1.89
LIMA1-206ENST00000550611 GFYI3L273 518 aa3.25□□□□□ -1.89
LIMA1-206ENST00000550611 BCKDKO14874 412 aa3.25□□□□□ -1.89
LIMA1-206ENST00000550611 CD3EAPO15446 510 aaKnown RBP3.25□□□□□ -1.89
LIMA1-206ENST00000550611 CDC40O60508 579 aaKnown RBP eCLIP3.25□□□□□ -1.89
LIMA1-206ENST00000550611 ZNF189O75820 626 aaPredicted RBP3.25□□□□□ -1.89
LIMA1-206ENST00000550611 CCNDBP1O95273 360 aa3.25□□□□□ -1.89
LIMA1-206ENST00000550611 SLC16A8O95907 504 aa3.25□□□□□ -1.89
LIMA1-206ENST00000550611 FHP07954 510 aa3.25□□□□□ -1.89
LIMA1-206ENST00000550611 SMIM10L1P0DMW3 83 aa3.25□□□□□ -1.89
LIMA1-206ENST00000550611 IL1RNP18510 177 aa3.25□□□□□ -1.89
LIMA1-206ENST00000550611 HRH2P25021 359 aa3.25□□□□□ -1.89
LIMA1-206ENST00000550611 PPIFP30405 207 aaKnown RBP3.25□□□□□ -1.89
LIMA1-206ENST00000550611 CEACAM8P31997 349 aaPredicted RBP3.25□□□□□ -1.89
LIMA1-206ENST00000550611 CTNNA1P35221 906 aaKnown RBP3.25□□□□□ -1.89
LIMA1-206ENST00000550611 RPA3P35244 121 aaPredicted RBP3.25□□□□□ -1.89
LIMA1-206ENST00000550611 PPARGP37231 505 aaPredicted RBP3.25□□□□□ -1.89
LIMA1-206ENST00000550611 SKIV2L2P42285 1042 aaKnown RBP3.25□□□□□ -1.89
LIMA1-206ENST00000550611 TTPAP49638 278 aa3.25□□□□□ -1.89
LIMA1-206ENST00000550611 PNLIPRP1P54315 467 aa3.25□□□□□ -1.89
LIMA1-206ENST00000550611 ADARP55265 1226 aaKnown RBP3.25□□□□□ -1.89
LIMA1-206ENST00000550611 RPS15AP62244 130 aaKnown RBP3.25□□□□□ -1.89
LIMA1-206ENST00000550611 PPIAP62937 165 aaKnown RBP3.25□□□□□ -1.89
LIMA1-206ENST00000550611 BTG2P78543 158 aa3.25□□□□□ -1.89
LIMA1-206ENST00000550611 CDH17Q12864 832 aa3.25□□□□□ -1.89
LIMA1-206ENST00000550611 KCNJ11Q14654 390 aa3.25□□□□□ -1.89
LIMA1-206ENST00000550611 TMED2Q15363 201 aa3.25□□□□□ -1.89
LIMA1-206ENST00000550611 RPS6KA1Q15418 735 aa3.25□□□□□ -1.89
LIMA1-206ENST00000550611 TYSND1Q2T9J0 566 aa3.25□□□□□ -1.89
LIMA1-206ENST00000550611 P3H1Q32P28 736 aa3.25□□□□□ -1.89
LIMA1-206ENST00000550611 FASTKD1Q53R41 847 aaKnown RBP3.25□□□□□ -1.89
LIMA1-206ENST00000550611 ACSBG2Q5FVE4 666 aa3.25□□□□□ -1.89
LIMA1-206ENST00000550611 CTSL3PQ5NE16 218 aa3.25□□□□□ -1.89
LIMA1-206ENST00000550611 SHEQ5VZ18 495 aa3.25□□□□□ -1.89
LIMA1-206ENST00000550611 PTRHD1Q6GMV3 140 aaKnown RBP3.25□□□□□ -1.89
LIMA1-206ENST00000550611 MRNIPQ6NTE8 343 aa3.25□□□□□ -1.89
LIMA1-206ENST00000550611 C11orf63Q6NUN7 778 aa3.25□□□□□ -1.89
LIMA1-206ENST00000550611 AADACL2Q6P093 401 aa3.25□□□□□ -1.89
LIMA1-206ENST00000550611 KLHL17Q6TDP4 642 aa3.25□□□□□ -1.89
LIMA1-206ENST00000550611 B3GNT6Q6ZMB0 384 aa3.25□□□□□ -1.89
LIMA1-206ENST00000550611 QSOX2Q6ZRP7 698 aa3.25□□□□□ -1.89
LIMA1-206ENST00000550611 RGS9BPQ6ZS82 235 aa3.25□□□□□ -1.89
LIMA1-206ENST00000550611 TRILQ7L0X0 811 aa3.25□□□□□ -1.89
LIMA1-206ENST00000550611 OTOAQ7RTW8 1153 aa3.25□□□□□ -1.89
LIMA1-206ENST00000550611 MAVSQ7Z434 540 aa3.25□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms