RNA–Protein interactions for RNA: ENST00000550331.1

NEK3-201, Transcript of NIMA related kinase 3, humanhuman

TSL 2

Gene NEK3, Length 733 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3-201ENST00000550331 INHBAP08476 426 aa6.92□□□□□ -1.3
NEK3-201ENST00000550331 HSD3B1P14060 373 aa6.92□□□□□ -1.3
NEK3-201ENST00000550331 HSD3B2P26439 372 aa6.92□□□□□ -1.3
NEK3-201ENST00000550331 CNTFP26441 200 aa6.92□□□□□ -1.3
NEK3-201ENST00000550331 CASQ1P31415 396 aa6.92□□□□□ -1.3
NEK3-201ENST00000550331 SOX18P35713 384 aa6.92□□□□□ -1.3
NEK3-201ENST00000550331 FEN1P39748 380 aaKnown RBP6.92□□□□□ -1.3
NEK3-201ENST00000550331 SLCO1A2P46721 670 aa6.92□□□□□ -1.3
NEK3-201ENST00000550331 PCYT1AP49585 367 aa6.92□□□□□ -1.3
NEK3-201ENST00000550331 EMDP50402 254 aa6.92□□□□□ -1.3
NEK3-201ENST00000550331 SERPINB9P50453 376 aa6.92□□□□□ -1.3
NEK3-201ENST00000550331 GFRA1P56159 465 aa6.92□□□□□ -1.3
NEK3-201ENST00000550331 RAC1P63000 192 aa6.92□□□□□ -1.3
NEK3-201ENST00000550331 HMGCS1Q01581 520 aa6.92□□□□□ -1.3
NEK3-201ENST00000550331 GAB1Q13480 694 aa6.92□□□□□ -1.3
NEK3-201ENST00000550331 EXOSC7Q15024 291 aaKnown RBP6.92□□□□□ -1.3
NEK3-201ENST00000550331 SGO1Q5FBB7 561 aa6.92□□□□□ -1.3
NEK3-201ENST00000550331 C8orf74Q6P047 294 aa6.92□□□□□ -1.3
NEK3-201ENST00000550331 LETMD1Q6P1Q0 360 aa6.92□□□□□ -1.3
NEK3-201ENST00000550331 AAGABQ6PD74 315 aa6.92□□□□□ -1.3
NEK3-201ENST00000550331 FAM111BQ6SJ93 734 aa6.92□□□□□ -1.3
NEK3-201ENST00000550331 IFNEQ86WN2 208 aa6.92□□□□□ -1.3
NEK3-201ENST00000550331 PLCZ1Q86YW0 608 aa6.92□□□□□ -1.3
NEK3-201ENST00000550331 SAMD14Q8IZD0 417 aaPredicted RBP6.92□□□□□ -1.3
NEK3-201ENST00000550331 WDSUB1Q8N9V3 476 aa6.92□□□□□ -1.3
NEK3-201ENST00000550331 OR52R1Q8NGF1 315 aa6.92□□□□□ -1.3
NEK3-201ENST00000550331 OR14L1PQ8NHC6 308 aa6.92□□□□□ -1.3
NEK3-201ENST00000550331 LINC01560Q8TB33 94 aa6.92□□□□□ -1.3
NEK3-201ENST00000550331 ZNF675Q8TD23 568 aa6.92□□□□□ -1.3
NEK3-201ENST00000550331 ZNF483Q8TF39 744 aaPredicted RBP6.92□□□□□ -1.3
NEK3-201ENST00000550331 SELENOMQ8WWX9 145 aa6.92□□□□□ -1.3
NEK3-201ENST00000550331 TM4SF18Q96CE8 201 aa6.92□□□□□ -1.3
NEK3-201ENST00000550331 TMCO6Q96DC7 493 aa6.92□□□□□ -1.3
NEK3-201ENST00000550331 ERP27Q96DN0 273 aa6.92□□□□□ -1.3
NEK3-201ENST00000550331 ARSGQ96EG1 525 aa6.92□□□□□ -1.3
NEK3-201ENST00000550331 CNRIP1Q96F85 164 aaPredicted RBP6.92□□□□□ -1.3
NEK3-201ENST00000550331 SLC35A4Q96G79 324 aa6.92□□□□□ -1.3
NEK3-201ENST00000550331 ZNF681Q96N22 645 aa6.92□□□□□ -1.3
NEK3-201ENST00000550331 COL21A1Q96P44 957 aa6.92□□□□□ -1.3
NEK3-201ENST00000550331 BTBD9Q96Q07 612 aa6.92□□□□□ -1.3
NEK3-201ENST00000550331 MRPL57Q9BQC6 102 aaKnown RBP6.92□□□□□ -1.3
NEK3-201ENST00000550331 TUBA1CQ9BQE3 449 aa6.92□□□□□ -1.3
NEK3-201ENST00000550331 YIPF4Q9BSR8 244 aa6.92□□□□□ -1.3
NEK3-201ENST00000550331 RBM24Q9BX46 236 aaKnown RBP6.92□□□□□ -1.3
NEK3-201ENST00000550331 SHCBP1LQ9BZQ2 653 aa6.92□□□□□ -1.3
NEK3-201ENST00000550331 TSPYL1Q9H0U9 437 aa6.92□□□□□ -1.3
NEK3-201ENST00000550331 MRPL46Q9H2W6 279 aaKnown RBP6.92□□□□□ -1.3
NEK3-201ENST00000550331 PIGMQ9H3S5 423 aa6.92□□□□□ -1.3
NEK3-201ENST00000550331 SERHLQ9NQF3 203 aa6.92□□□□□ -1.3
NEK3-201ENST00000550331 FARSBQ9NSD9 589 aaKnown RBP6.92□□□□□ -1.3
NEK3-201ENST00000550331 BEX4Q9NWD9 120 aaPredicted RBP6.92□□□□□ -1.3
NEK3-201ENST00000550331 GALNT8Q9NY28 637 aa6.92□□□□□ -1.3
NEK3-201ENST00000550331 TAS2R10Q9NYW0 307 aa6.92□□□□□ -1.3
NEK3-201ENST00000550331 NINJ2Q9NZG7 142 aa6.92□□□□□ -1.3
NEK3-201ENST00000550331 CLCF1Q9UBD9 225 aa6.92□□□□□ -1.3
NEK3-201ENST00000550331 TRPS1Q9UHF7 1281 aa6.92□□□□□ -1.3
NEK3-201ENST00000550331 MAPRE3Q9UPY8 281 aa6.92□□□□□ -1.3
NEK3-201ENST00000550331 GPR55Q9Y2T6 319 aaPredicted RBP6.92□□□□□ -1.3
NEK3-201ENST00000550331 MRPS18CQ9Y3D5 142 aaKnown RBP6.92□□□□□ -1.3
NEK3-201ENST00000550331 ZNF780BQ9Y6R6 833 aa6.92□□□□□ -1.3
NEK3-201ENST00000550331 HCRTR2O43614 444 aa6.91□□□□□ -1.3
NEK3-201ENST00000550331 BCAS2O75934 225 aaPredicted RBP6.91□□□□□ -1.3
NEK3-201ENST00000550331 KRT6AP02538 564 aa6.91□□□□□ -1.3
NEK3-201ENST00000550331 HRGP04196 525 aa6.91□□□□□ -1.3
NEK3-201ENST00000550331 KRT6BP04259 564 aa6.91□□□□□ -1.3
NEK3-201ENST00000550331 CT45A8P0DMV1 189 aa6.91□□□□□ -1.3
NEK3-201ENST00000550331 CT45A9P0DMV2 189 aa6.91□□□□□ -1.3
NEK3-201ENST00000550331 PCSK2P16519 638 aa6.91□□□□□ -1.3
NEK3-201ENST00000550331 ZNF708P17019 499 aa6.91□□□□□ -1.3
NEK3-201ENST00000550331 SRD5A2P31213 254 aa6.91□□□□□ -1.3
NEK3-201ENST00000550331 HOXC12P31275 282 aa6.91□□□□□ -1.3
NEK3-201ENST00000550331 CPA2P48052 419 aa6.91□□□□□ -1.3
NEK3-201ENST00000550331 KRT6CP48668 564 aa6.91□□□□□ -1.3
NEK3-201ENST00000550331 ALDH9A1P49189 494 aa6.91□□□□□ -1.3
NEK3-201ENST00000550331 LHX2P50458 406 aa6.91□□□□□ -1.3
NEK3-201ENST00000550331 AGFG1P52594 562 aaKnown RBP6.91□□□□□ -1.3
NEK3-201ENST00000550331 DIO3P55073 304 aa6.91□□□□□ -1.3
NEK3-201ENST00000550331 SLC7A5Q01650 507 aa6.91□□□□□ -1.3
NEK3-201ENST00000550331 DUSP2Q05923 314 aa6.91□□□□□ -1.3
NEK3-201ENST00000550331 CKAP4Q07065 602 aaKnown RBP6.91□□□□□ -1.3
NEK3-201ENST00000550331 FOXF2Q12947 444 aa6.91□□□□□ -1.3
NEK3-201ENST00000550331 CSTF3Q12996 717 aaKnown RBP6.91□□□□□ -1.3
NEK3-201ENST00000550331 EFR3AQ14156 821 aa6.91□□□□□ -1.3
NEK3-201ENST00000550331 BCL2A1Q16548 175 aa6.91□□□□□ -1.3
NEK3-201ENST00000550331 TRMT12Q53H54 448 aaKnown RBP6.91□□□□□ -1.3
NEK3-201ENST00000550331 CT45A2Q5DJT8 189 aa6.91□□□□□ -1.3
NEK3-201ENST00000550331 ZNF628Q5EBL2 1059 aa6.91□□□□□ -1.3
NEK3-201ENST00000550331 SYT10Q6XYQ8 523 aa6.91□□□□□ -1.3
NEK3-201ENST00000550331 TRIM42Q8IWZ5 723 aa6.91□□□□□ -1.3
NEK3-201ENST00000550331 C1orf52Q8N6N3 182 aaKnown RBP6.91□□□□□ -1.3
NEK3-201ENST00000550331 SIMC1Q8NDZ2 872 aa6.91□□□□□ -1.3
NEK3-201ENST00000550331 ADCY4Q8NFM4 1077 aa6.91□□□□□ -1.3
NEK3-201ENST00000550331 RNF138Q8WVD3 245 aa6.91□□□□□ -1.3
NEK3-201ENST00000550331 PAFAH2Q99487 392 aa6.91□□□□□ -1.3
NEK3-201ENST00000550331 G6PC3Q9BUM1 346 aa6.91□□□□□ -1.3
NEK3-201ENST00000550331 CDC42EP4Q9H3Q1 356 aaKnown RBP6.91□□□□□ -1.3
NEK3-201ENST00000550331 EHD3Q9NZN3 535 aa6.91□□□□□ -1.3
NEK3-201ENST00000550331 VPS29Q9UBQ0 182 aa6.91□□□□□ -1.3
NEK3-201ENST00000550331 MCM8Q9UJA3 840 aa6.91□□□□□ -1.3
NEK3-201ENST00000550331 ZNF180Q9UJW8 692 aa6.91□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 8.9 ms